Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014879

Physical Location & Seq

Genomic Coordinates Forward (+)

58777301 .. 58778641

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAATAATTCTCAAATATCATCATCATCTCTGTCTTCAAACGGAACCGATGATTATTATTATTTGGTCATGACTTTATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTATGCGAATAATAATCACCTTTTGGCGGAGTTGGATGACAATGAGGACGACCAGGCCGAATCAAGGCGTAGAGGAGCAGTTCATGGCCATATAGTTATTAATCATCCTCGACAAGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGTTCCGCGATTCGGAGAAGCCAAATTTCGTAGACGATTTCGAATGAGCAAAAGTTTATTTCATCAAATTGCGGAAGCCGTCAAAGATCACAACAATTTCTTTGTGCAACAACGCGATGGTATTGATGTTTTTCGAATGCTTGCATATGGTGTACCAGCTGATGCTCTTGATGAATATTTAAAAATTGGTGAGTCTACTACAATTCGATGTATGAAAAGCTTTTGTCGAGCTGTTATAGAGGTCTTTGGAAACCGCTATCTAAGAACACCTAACGCGGAGGATGTTGCGAGACTTTTGTATATAGGTGAAGAACGTGGGTTCCCAGGAATATTAGGAAGCTTAGATTGCATGCATTGGCAAGGTAAATCTCCTCCCGTTAATTATAAGATTTTAGAAAAATATTATGACATCGGTTATTATTTAGCCGATGGTATATATCCTAAGTGGTCTACACTAGTACAAACTATTCATGATCCTCAAGGTCCAAAAAAAGACGTTGAACGAGCATTTGGATTTCTTCAATCACGTTGGGCAATTGTCAAGGGACCAGCACGTTTTTGGAATAAATGTGTTTTACATGATATGATGACTACATGCATCATAAAGCATAACATGATAATCGAAGATGAGCGTGATCTAAGTGCTCCAATAAATGATTTCAATCCAGCCCCTGCATTATCTGTTGAGTTGGTAACTAATGAAACTACACAATTCGAGGAGTTCCTTGCTCGACATAGGAAAATTAAAGATAAGTCGGCTCATATTACACTTCGTAATGCATTGATTGATCATATATGGAACCGACATGGTATACATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

361

Amino Acids

41.83

Weight (kDa)

6.21

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	173 - 210	7e-12	Plant transposon protein
Plant_tran	PF04827	208 - 301	3.4e-35	Plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35490
rosa_chinensis	RchiOBHm_Chr4g0404131
rosa_multiflora	Rmu_sc0000149.1_g000031 Rmu_sc0001240.1_g000015 Rmu_sc0001744.1_g000005 Rmu_sc0002308.1_g000015 Rmu_sc0002475.1_g000023 Rmu_sc0002666.1_g000023 Rmu_sc0010547.1_g000011 Rmu_sc0014826.1_g000003 Rmu_ssc0000134.1_g000004
rosa_wichuraiana	Rw2G035720 Rw4G006380 Rw5G041660 Rw7G024320 Rw7G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AccI	GTMKAC	4 cut(s)	295, 458, 713, 1075
AccII	CGCG	3 cut(s)	271, 378, 539
AciI	CCGC	5 cut(s)	137, 269, 335, 517, 539
AclWI	GGATC	1 cut(s)	731
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	2 cut(s)	417, 723
AfiI	CCNNNNNNNGG	3 cut(s)	136, 174, 275
AgsI	TTSAA	4 cut(s)	39, 764, 785, 925
AhlI	ACTAGT	1 cut(s)	718
AjnI	CCWGG	2 cut(s)	162, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	5 cut(s)	230, 422, 483, 494, 603
AluI	AGCT	5 cut(s)	230, 422, 483, 494, 603
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	2 cut(s)	165, 196
ApoI	RAATTY	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	746, 809
AsuHPI	GGTGA	3 cut(s)	119, 464, 581
AsuII	TTCGAA	2 cut(s)	304, 397
AvaII	GGWCC	2 cut(s)	746, 809
BalI	TGGCCA	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	910
BbvCI	CCTCAGC	1 cut(s)	261
BccI	CCATC	2 cut(s)	374, 686
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	164, 588
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	1 cut(s)	547
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	164, 588
Bme18I	GGWCC	2 cut(s)	746, 809
BmgT120I	GGNCC	2 cut(s)	746, 809
BmiI	GGNNCC	5 cut(s)	46, 267, 584, 810, 1064
BmrFI	CCNGG	2 cut(s)	164, 588
BmsI	GCATC	2 cut(s)	415, 870
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	304, 397
BpuEI	CTTGAG	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	924
BsaJI	CCNNGG	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 174, 275
Bse8I	GATNNNNATC	1 cut(s)	924
BseBI	CCWGG	2 cut(s)	164, 588
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	3 cut(s)	151, 214, 550
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	3 cut(s)	136, 174, 275
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	4 cut(s)	101, 198, 624, 995
Bsh1236I	CGCG	3 cut(s)	271, 378, 539
BshFI	GGCC	2 cut(s)	167, 198
BsiHKAI	GWGCWC	1 cut(s)	910
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	3 cut(s)	136, 174, 275
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	822
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	167, 198
Bsp119I	TTCGAA	2 cut(s)	304, 397
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp143I	GATC	4 cut(s)	349, 736, 898, 1051
BspACI	CCGC	5 cut(s)	137, 269, 335, 517, 539
BspANI	GGCC	2 cut(s)	167, 198
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	3 cut(s)	271, 378, 539
BspHI	TCATGA	2 cut(s)	69, 733
BspLI	GGNNCC	5 cut(s)	46, 267, 584, 810, 1064
BspPI	GGATC	1 cut(s)	731
BspT104I	TTCGAA	2 cut(s)	304, 397
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	4 cut(s)	349, 736, 898, 1051
BssNAI	GTATAC	1 cut(s)	1076
Bst1107I	GTATAC	1 cut(s)	1076
Bst2UI	CCWGG	2 cut(s)	164, 588
BstBI	TTCGAA	2 cut(s)	304, 397
BstC8I	GCNNGC	2 cut(s)	405, 614
BstDEI	CTNAG	5 cut(s)	261, 524, 604, 705, 902
BstF5I	GGATG	3 cut(s)	151, 214, 550
BstFNI	CGCG	3 cut(s)	271, 378, 539
BstKTI	GATC	4 cut(s)	352, 739, 901, 1054
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	4 cut(s)	349, 736, 898, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	2 cut(s)	164, 588
BstNSI	RCATGY	3 cut(s)	112, 616, 861
BstSCI	CCNGG	2 cut(s)	162, 586
BstUI	CGCG	3 cut(s)	271, 378, 539
BstV2I	GAAGAC	1 cut(s)	27
BstZ17I	GTATAC	1 cut(s)	1076
BsuRI	GGCC	2 cut(s)	167, 198
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	3 cut(s)	151, 214, 550
Cac8I	GCNNGC	2 cut(s)	405, 614
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	2 cut(s)	69, 733
Cfr13I	GGNCC	2 cut(s)	746, 809
Csp6I	GTAC	2 cut(s)	416, 722
CviQI	GTAC	2 cut(s)	416, 722
DdeI	CTNAG	5 cut(s)	261, 524, 604, 705, 902
DpnI	GATC	4 cut(s)	351, 738, 900, 1053
DpnII	GATC	4 cut(s)	349, 736, 898, 1051
DraI	TTTAAA	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	746, 809
EcoRII	CCWGG	2 cut(s)	162, 586
EcoT22I	ATGCAT	3 cut(s)	618, 863, 1045
FaqI	GGGAC	1 cut(s)	822
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	1051
FblI	GTMKAC	4 cut(s)	295, 458, 713, 1075
FokI	GGATG	3 cut(s)	158, 201, 557
FspBI	CTAG	1 cut(s)	719
HaeIII	GGCC	2 cut(s)	167, 198
HindIII	AAGCTT	2 cut(s)	481, 601
HinfI	GANTC	3 cut(s)	170, 273, 455
HphI	GGTGA	3 cut(s)	119, 464, 581
Hpy166II	GTNNAC	5 cut(s)	296, 416, 459, 714, 1076
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	3 cut(s)	70, 431, 734
Hpy8I	GTNNAC	5 cut(s)	296, 416, 459, 714, 1076
HpyCH4IV	ACGT	4 cut(s)	577, 759, 790, 817
HpyCH4V	TGCA	7 cut(s)	370, 407, 612, 616, 861, 938, 1043
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	5 cut(s)	261, 524, 604, 705, 902
HpySE526I	ACGT	4 cut(s)	577, 759, 790, 817
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	4 cut(s)	349, 736, 898, 1051
LmnI	GCTCC	3 cut(s)	88, 185, 913
LpnPI	CCDG	9 cut(s)	149, 176, 216, 432, 573, 600, 825, 942, 948
LweI	GCATC	2 cut(s)	415, 870
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	4 cut(s)	577, 759, 790, 817
MaeIII	GTNAC	1 cut(s)	955
MalI	GATC	4 cut(s)	351, 738, 900, 1053
MboI	GATC	4 cut(s)	349, 736, 898, 1051
MboII	GAAGA	4 cut(s)	27, 584, 773, 899
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	910
MlsI	TGGCCA	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	198
Mph1103I	ATGCAT	3 cut(s)	618, 863, 1045
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	4 cut(s)	210, 443, 642, 1008
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	164, 588
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	2 cut(s)	164, 588
MvnI	CGCG	3 cut(s)	271, 378, 539
MwoI	GCNNNNNNNGC	1 cut(s)	609
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	4 cut(s)	349, 736, 898, 1051
NlaIV	GGNNCC	5 cut(s)	46, 267, 584, 810, 1064
NsiI	ATGCAT	3 cut(s)	618, 863, 1045
NspI	RCATGY	3 cut(s)	112, 616, 861
NspV	TTCGAA	2 cut(s)	304, 397
PaeI	GCATGC	1 cut(s)	616
PagI	TCATGA	2 cut(s)	69, 733
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	170, 273
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PshBI	ATTAAT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	648
Psp6I	CCWGG	2 cut(s)	162, 586
PspGI	CCWGG	2 cut(s)	162, 586
PspN4I	GGNNCC	5 cut(s)	46, 267, 584, 810, 1064
PspPI	GGNCC	2 cut(s)	746, 809
PstNI	CAGNNNCTG	1 cut(s)	935
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	417, 723
RsaNI	GTAC	2 cut(s)	416, 722
SaqAI	TTAA	4 cut(s)	210, 443, 642, 1008
Sau3AI	GATC	4 cut(s)	349, 736, 898, 1051
Sau96I	GGNCC	2 cut(s)	746, 809
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	164, 588
SduI	GDGCHC	1 cut(s)	910
SfaNI	GCATC	2 cut(s)	415, 870
SfuI	TTCGAA	2 cut(s)	304, 397
SinI	GGWCC	2 cut(s)	746, 809
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
SpeI	ACTAGT	1 cut(s)	718
SphI	GCATGC	1 cut(s)	616
SsiI	CCGC	5 cut(s)	137, 269, 335, 517, 539
SspI	AATATT	3 cut(s)	440, 594, 665
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	2 cut(s)	162, 586
TaiI	ACGT	4 cut(s)	580, 762, 793, 820
TaqI	TCGA	8 cut(s)	220, 304, 397, 469, 490, 885, 978, 994
TatI	WGTACW	1 cut(s)	721
TfiI	GAWTC	2 cut(s)	170, 273
Tru1I	TTAA	4 cut(s)	210, 443, 642, 1008
Tru9I	TTAA	4 cut(s)	210, 443, 642, 1008
TspDTI	ATGAA	7 cut(s)	17, 182, 314, 450, 491, 722, 978
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	746, 809
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	3 cut(s)	112, 616, 861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	819
XmiI	GTMKAC	4 cut(s)	295, 458, 713, 1075
XspI	CTAG	1 cut(s)	719
Zsp2I	ATGCAT	3 cut(s)	618, 863, 1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.