Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000134.1

Orthogroup ID

OG0014879

Physical Location & Seq

Genomic Coordinates Reverse (-)

28902 .. 31277

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000134.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atgtatgagaataataatcacctcttggcagagttggatgacaatgaggacgatgaggctgaatcgaggcgtagaggagcagttcctggccatatagttattaattgtcttcgacaagaagctggatataatctatacatggactactttgctgaggttccgatattcggagaagcaaaatttcgcagacgatttcgaataagaaaaagtttatttcatcaaattgcggaagccgtcaaagatcaccacaatttctttgtggaacaacgcgatggtattggtaagctcggattatcatctttgcaaaaatttacagctatttttcgaatgcttgcatatggtgtaccatctgatgctcttgatgaatatttaaaaattggctccaacaaagacatcaatgtgcttgaagcatctcacctatttgcaaatcttgcggaaggtaaatctcctcccgttaattgtaagattctagaaaaagattatgacaccggttattatttagccgatggtatatatcctaagtggtctacactagtgcaaactattcatgatcctcaaggtccaaaaaaagtattgtttgccaaaaaacaagagtcgtgtcgaaaggatgttgaacgagcatttggagttcttcaatcacgttgggcagttgtcaagggaccagcacgtttttggaataaatgtgttttacatgatataatgactacatgcaacataatgcataacatgataatcgaagatgagcgtgatctaagtgctccaataaatgatttcaatccagcccctgcattatctgttgagttggattctatcaaaggtgttaatcaaaagaaagataaagtatgggaaagaataactgatttgtggaataaggataaggatgaacaccagatgcgaagcgccaagtctcttcaaagtcgattttctgatcttaactattgcgtaagcaaatttcgtggttcacttcgccaggtggaaaatcggaatcaaagtggtgcttcagagaaagatatttatacccaggcaaaacaacatctattggatgatcctaactatacaaagaagaaacttcaatttgatcatgtgtggcctattctcaaggatgctggaaaatggaccgataatgacgaacaagagctgtttagtgatgaacttgcctcacctcatcggcctattggtgtaaagaaagcaaagctgaaaagaaaagagttgaatgagaagactaagattgttcaacaagtgaaagaatccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

418

Amino Acids

48.27

Weight (kDa)

8.31

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35490
rosa_chinensis	RchiOBHm_Chr4g0404131
rosa_multiflora	Rmu_sc0000149.1_g000031 Rmu_sc0001240.1_g000015 Rmu_sc0001744.1_g000005 Rmu_sc0002308.1_g000015 Rmu_sc0002475.1_g000023 Rmu_sc0002666.1_g000023 Rmu_sc0010547.1_g000011 Rmu_sc0014826.1_g000003 Rmu_ssc0000134.1_g000004
rosa_wichuraiana	Rw2G035720 Rw4G006380 Rw5G041660 Rw7G024320 Rw7G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	227, 434
AclWI	GGATC	2 cut(s)	545, 1040
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	3 cut(s)	179, 308, 950
AcuI	CTGAAG	1 cut(s)	984
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgeI	ACCGGT	1 cut(s)	488
AgsI	TTSAA	8 cut(s)	407, 614, 635, 775, 914, 1073, 1213, 1235
AhlI	ACTAGT	1 cut(s)	532
AjnI	CCWGG	3 cut(s)	85, 969, 1020
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	5 cut(s)	122, 286, 317, 1138, 1195
AluI	AGCT	5 cut(s)	122, 286, 317, 1138, 1195
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	2 cut(s)	545, 1040
AlwNI	CAGNNNCTG	2 cut(s)	86, 785
AoxI	GGCC	3 cut(s)	88, 1088, 1169
ApoI	RAATTY	3 cut(s)	179, 308, 950
AseI	ATTAAT	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	902
AspS9I	GGNCC	3 cut(s)	560, 659, 1116
AsuHPI	GGTGA	4 cut(s)	11, 236, 407, 1152
AsuII	TTCGAA	2 cut(s)	196, 325
AvaII	GGWCC	3 cut(s)	560, 659, 1116
BalI	TGGCCA	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	101, 1226
Bbv12I	GWGCWC	1 cut(s)	760
BbvCI	CCTCAGC	1 cut(s)	153
BccI	CCATC	3 cut(s)	266, 355, 500
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	3 cut(s)	87, 971, 1022
BclI	TGATCA	1 cut(s)	1078
BcoDI	GTCTC	1 cut(s)	912
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	2 cut(s)	470, 533
BfoI	RGCGCY	1 cut(s)	903
Bme1390I	CCNGG	3 cut(s)	87, 971, 1022
Bme18I	GGWCC	3 cut(s)	560, 659, 1116
BmgT120I	GGNCC	3 cut(s)	560, 659, 1116
BmiI	GGNNCC	3 cut(s)	159, 382, 660
BmrFI	CCNGG	3 cut(s)	87, 971, 1022
BmsI	GCATC	4 cut(s)	343, 419, 882, 1093
BpiI	GAAGAC	2 cut(s)	101, 1226
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	2 cut(s)	196, 325
BpuEI	CTTGAG	2 cut(s)	540, 1082
BsaBI	GATNNNNATC	2 cut(s)	295, 774
BsaJI	CCNNGG	1 cut(s)	1020
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	488
Bse8I	GATNNNNATC	2 cut(s)	295, 774
BseBI	CCWGG	3 cut(s)	87, 971, 1022
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	5 cut(s)	43, 613, 886, 1048, 1108
BseJI	GATNNNNATC	2 cut(s)	295, 774
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	90, 438
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	90, 1090, 1171
BshTI	ACCGGT	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	672
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	912
BsmFI	GGGAC	1 cut(s)	672
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	90, 1090, 1171
Bsp119I	TTCGAA	2 cut(s)	196, 325
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
BspACI	CCGC	2 cut(s)	227, 434
BspANI	GGCC	3 cut(s)	90, 1090, 1171
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	159, 382, 660
BspPI	GGATC	2 cut(s)	545, 1040
BspT104I	TTCGAA	2 cut(s)	196, 325
BsrFI	RCCGGY	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
Bst2UI	CCWGG	3 cut(s)	87, 971, 1022
Bst6I	CTCTTC	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBI	TTCGAA	2 cut(s)	196, 325
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	153, 519, 752, 1224
BstF5I	GGATG	5 cut(s)	43, 613, 886, 1048, 1108
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	6 cut(s)	244, 553, 751, 931, 1048, 1081
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	3 cut(s)	87, 971, 1022
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	3 cut(s)	85, 969, 1020
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	2 cut(s)	101, 1226
BsuRI	GGCC	3 cut(s)	90, 1090, 1171
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	5 cut(s)	43, 613, 886, 1048, 1108
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	2 cut(s)	86, 785
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	902
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	560, 659, 1116
Csp6I	GTAC	1 cut(s)	344
CspAI	ACCGGT	1 cut(s)	488
CspCI	CAANNNNNGTGG	2 cut(s)	937, 972
CviAII	CATG	6 cut(s)	139, 548, 692, 708, 727, 1082
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	4 cut(s)	153, 519, 752, 1224
DpnI	GATC	6 cut(s)	243, 552, 750, 930, 1047, 1080
DpnII	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
DraI	TTTAAA	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Eco47I	GGWCC	3 cut(s)	560, 659, 1116
Eco57I	CTGAAG	1 cut(s)	984
EcoRII	CCWGG	3 cut(s)	85, 969, 1020
EcoT22I	ATGCAT	1 cut(s)	723
FaeI	CATG	6 cut(s)	142, 551, 695, 711, 730, 1085
FalI	AAGNNNNNCTT	2 cut(s)	982, 1014
FaqI	GGGAC	1 cut(s)	672
FatI	CATG	6 cut(s)	138, 547, 691, 707, 726, 1081
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	1078
FblI	GTMKAC	1 cut(s)	527
FokI	GGATG	5 cut(s)	50, 620, 893, 1055, 1115
FspBI	CTAG	2 cut(s)	470, 533
GlaI	GCGC	1 cut(s)	901
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	3 cut(s)	90, 1090, 1171
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	902
Hin1II	CATG	6 cut(s)	142, 551, 695, 711, 730, 1085
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HinfI	GANTC	6 cut(s)	62, 466, 593, 806, 985, 1247
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	4 cut(s)	11, 236, 407, 1152
Hpy166II	GTNNAC	3 cut(s)	344, 528, 962
Hpy188I	TCNGA	7 cut(s)	162, 170, 290, 352, 928, 984, 1003
Hpy188III	TCNNGA	3 cut(s)	359, 470, 548
Hpy8I	GTNNAC	3 cut(s)	344, 528, 962
HpyAV	CCTTC	1 cut(s)	431
HpyCH4IV	ACGT	2 cut(s)	640, 667
HpyCH4V	TGCA	7 cut(s)	304, 335, 425, 538, 711, 721, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	4 cut(s)	153, 519, 752, 1224
HpySE526I	ACGT	2 cut(s)	640, 667
Hsp92II	CATG	6 cut(s)	142, 551, 695, 711, 730, 1085
HspAI	GCGC	1 cut(s)	900
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
LmnI	GCTCC	3 cut(s)	77, 386, 763
LweI	GCATC	4 cut(s)	343, 419, 882, 1093
MaeI	CTAG	2 cut(s)	470, 533
MaeII	ACGT	2 cut(s)	640, 667
MalI	GATC	6 cut(s)	243, 552, 750, 930, 1047, 1080
MboI	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
MboII	GAAGA	6 cut(s)	101, 623, 749, 902, 1075, 1231
MhlI	GDGCHC	1 cut(s)	760
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	9 cut(s)	103, 179, 222, 250, 308, 375, 457, 950, 1073
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	3 cut(s)	15, 408, 783
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	723
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	5 cut(s)	102, 371, 456, 822, 933
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	90
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	3 cut(s)	87, 971, 1022
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	3 cut(s)	87, 971, 1022
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
NlaIII	CATG	6 cut(s)	142, 551, 695, 711, 730, 1085
NlaIV	GGNNCC	3 cut(s)	159, 382, 660
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	1 cut(s)	711
NspV	TTCGAA	2 cut(s)	196, 325
PagI	TCATGA	1 cut(s)	547
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	5 cut(s)	62, 466, 806, 985, 1247
PinAI	ACCGGT	1 cut(s)	488
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	3 cut(s)	85, 969, 1020
PspGI	CCWGG	3 cut(s)	85, 969, 1020
PspN4I	GGNNCC	3 cut(s)	159, 382, 660
PspPI	GGNCC	3 cut(s)	560, 659, 1116
PstNI	CAGNNNCTG	2 cut(s)	86, 785
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	5 cut(s)	102, 371, 456, 822, 933
Sau3AI	GATC	6 cut(s)	241, 550, 748, 928, 1045, 1078
Sau96I	GGNCC	3 cut(s)	560, 659, 1116
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	87, 971, 1022
SduI	GDGCHC	1 cut(s)	760
SfaNI	GCATC	4 cut(s)	343, 419, 882, 1093
SfuI	TTCGAA	2 cut(s)	196, 325
SinI	GGWCC	3 cut(s)	560, 659, 1116
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	555, 1097
SmoI	CTYRAG	2 cut(s)	555, 1097
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	9 cut(s)	103, 179, 222, 250, 308, 375, 457, 950, 1073
SsiI	CCGC	2 cut(s)	227, 434
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	2 cut(s)	470, 533
StyD4I	CCNGG	3 cut(s)	85, 969, 1020
TaiI	ACGT	2 cut(s)	643, 670
TaqI	TCGA	7 cut(s)	65, 112, 196, 325, 601, 735, 919
TaqII	GACCGA	1 cut(s)	1133
TasI	AATT	9 cut(s)	103, 179, 222, 250, 308, 375, 457, 950, 1073
TfiI	GAWTC	5 cut(s)	62, 466, 806, 985, 1247
Tru1I	TTAA	5 cut(s)	102, 371, 456, 822, 933
Tru9I	TTAA	5 cut(s)	102, 371, 456, 822, 933
TspDTI	ATGAA	5 cut(s)	206, 378, 536, 897, 1164
VpaK11BI	GGWCC	3 cut(s)	560, 659, 1116
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	3 cut(s)	179, 308, 950
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	2 cut(s)	470, 533
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.