Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014879

Physical Location & Seq

Genomic Coordinates Forward (+)

13210505 .. 13211845

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAGTAATTCTCAAATATCATCATCCTCTTTGTCTTCAAACGGAACAGATGATTATTATTATCGGGTCATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTATGCGAATAATAATCACCTCTTGGCAGAGTTTGATGACAATGAGGACGACGAGGCTAAATCGAGGCTTAGAGGAGCAGTTCCTAGCCATATTGTTATTAATCGTCCTCGACAAGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGTTCCGCGATTCGGAGAAGCAAAATTTCGTAGACGATTTCGAATGAGCAAAAGTTTATTTCATCAAATTGCGAAAGCCGTCAAAGATCACGACAATTTCTTTGTGCAACAACGCAATGGTATTGGTAAGCTCGGATTATCATCTTTGCAAAAATTTACAGCTGTTTTTCGAATGCTTGCATATGGTGTACCAGCTGATGCTCTTGATGAATATTTAAAAATTGCTGTTATAGAGGTCTTTGGAAACCGCTATCTAAGAACACCTAACGCCGAGGATGTTGCGAGACTTTTGTATATAGGTGAAGAACGTGGGTTCCCAAGAATGTTAGGGATCTTAGATTGCATGCATTGTCAAGGTAAACCTCCTCCCGTTAATTATAAGATTCTAGAAAAAGATTATGACACCGGTTATTATTTAGCCGATGGTATATATCCTAAGTGGTCTACACTAGTGCAAACTATTCATGATCCTCAAGGTCCAAAAAAAGTATTGTTTGCCAAAAAACAAGAGTCGTGTCGGAAGGATGTTGAACGAGCATTTGGAGTTCTTCAATCACGTTGGGCAATTGTCAAGGGACCAGCACGTTTTTGGAATAAATGTGTTTTACATGATATAATGACTACATGCATCATAATGCATAACATGATAATCGAAGATGAGCGTGATCTAAGTGCTCCAATAAATTATTTTAATCAAGCCCCTGCATTATCTGTTGAGTTGGTAACTAATGAAACTACACAGTTCGAGGAGTTCCTTGCTCGACATAGGAAAATTAAAGATAAGTCGGCTCATGTTGCACTTCGTAATGCATTGATTGATCATATATGGAACCGACATGGTATACATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

371

Amino Acids

42.81

Weight (kDa)

8.15

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	171 - 208	2.9e-10	Plant transposon protein
Plant_tran	PF04827	206 - 311	6.9e-51	Plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35490
rosa_chinensis	RchiOBHm_Chr4g0404131
rosa_multiflora	Rmu_sc0000149.1_g000031 Rmu_sc0001240.1_g000015 Rmu_sc0001744.1_g000005 Rmu_sc0002308.1_g000015 Rmu_sc0002475.1_g000023 Rmu_sc0002666.1_g000023 Rmu_sc0010547.1_g000011 Rmu_sc0014826.1_g000003 Rmu_ssc0000134.1_g000004
rosa_wichuraiana	Rw2G035720 Rw4G006380 Rw5G041660 Rw7G024320 Rw7G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccI	GTMKAC	3 cut(s)	295, 707, 1105
AccII	CGCG	1 cut(s)	271
AciI	CCGC	2 cut(s)	269, 511
AclWI	GGATC	2 cut(s)	602, 725
AcsI	RAATTY	2 cut(s)	287, 416
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	3 cut(s)	39, 794, 815
AhlI	ACTAGT	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
AluBI	AGCT	4 cut(s)	230, 394, 425, 458
AluI	AGCT	4 cut(s)	230, 394, 425, 458
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	602, 725
ApoI	RAATTY	2 cut(s)	287, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AseI	ATTAAT	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	668
AspS9I	GGNCC	2 cut(s)	740, 839
AsuHPI	GGTGA	2 cut(s)	119, 575
AsuII	TTCGAA	2 cut(s)	304, 433
AvaII	GGWCC	2 cut(s)	740, 839
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	940
BbvCI	CCTCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	680
BceAI	ACGGC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BclI	TGATCA	1 cut(s)	1081
BcoDI	GTCTC	1 cut(s)	541
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	3 cut(s)	195, 650, 713
Bme18I	GGWCC	2 cut(s)	740, 839
BmgT120I	GGNCC	2 cut(s)	740, 839
BmiI	GGNNCC	4 cut(s)	267, 578, 840, 1094
BmsI	GCATC	2 cut(s)	451, 900
BpiI	GAAGAC	1 cut(s)	27
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	304, 433
BpuEI	CTTGAG	1 cut(s)	720
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	3 cut(s)	23, 544, 793
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	4 cut(s)	101, 198, 618, 1025
Bsh1236I	CGCG	1 cut(s)	271
BshTI	ACCGGT	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	940
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	852
BsmI	GAATGC	1 cut(s)	441
Bsp119I	TTCGAA	2 cut(s)	304, 433
Bsp1286I	GDGCHC	1 cut(s)	940
Bsp143I	GATC	5 cut(s)	349, 594, 730, 928, 1081
BspACI	CCGC	2 cut(s)	269, 511
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	4 cut(s)	267, 578, 840, 1094
BspPI	GGATC	2 cut(s)	602, 725
BspT104I	TTCGAA	2 cut(s)	304, 433
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	5 cut(s)	349, 594, 730, 928, 1081
BssNAI	GTATAC	1 cut(s)	1106
Bst1107I	GTATAC	1 cut(s)	1106
Bst4CI	ACNGT	1 cut(s)	1005
BstBI	TTCGAA	2 cut(s)	304, 433
BstC8I	GCNNGC	2 cut(s)	441, 608
BstDEI	CTNAG	6 cut(s)	179, 261, 518, 598, 699, 932
BstF5I	GGATG	3 cut(s)	23, 544, 793
BstFNI	CGCG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	352, 597, 733, 931, 1084
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	5 cut(s)	349, 594, 730, 928, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	1058
BstNSI	RCATGY	3 cut(s)	112, 610, 891
BstUI	CGCG	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	594
BstZ17I	GTATAC	1 cut(s)	1106
BtsCI	GGATG	3 cut(s)	23, 544, 793
Cac8I	GCNNGC	2 cut(s)	441, 608
CciI	TCATGA	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	740, 839
Csp6I	GTAC	1 cut(s)	452
CspAI	ACCGGT	1 cut(s)	668
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	6 cut(s)	179, 261, 518, 598, 699, 932
DpnI	GATC	5 cut(s)	351, 596, 732, 930, 1083
DpnII	GATC	5 cut(s)	349, 594, 730, 928, 1081
DraI	TTTAAA	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	740, 839
EcoT22I	ATGCAT	4 cut(s)	612, 893, 903, 1075
FaqI	GGGAC	1 cut(s)	852
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	1081
FblI	GTMKAC	3 cut(s)	295, 707, 1105
FokI	GGATG	3 cut(s)	10, 551, 800
FspBI	CTAG	3 cut(s)	195, 650, 713
HapII	CCGG	1 cut(s)	669
HinfI	GANTC	3 cut(s)	273, 646, 773
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	2 cut(s)	119, 575
Hpy166II	GTNNAC	5 cut(s)	296, 452, 623, 708, 1106
Hpy188I	TCNGA	3 cut(s)	278, 398, 783
Hpy188III	TCNNGA	4 cut(s)	353, 467, 650, 728
Hpy8I	GTNNAC	5 cut(s)	296, 452, 623, 708, 1106
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	778
HpyCH4III	ACNGT	1 cut(s)	1005
HpyCH4IV	ACGT	3 cut(s)	571, 820, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1058
HpyF3I	CTNAG	6 cut(s)	179, 261, 518, 598, 699, 932
HpySE526I	ACGT	3 cut(s)	571, 820, 847
Ksp22I	TGATCA	1 cut(s)	1081
Kzo9I	GATC	5 cut(s)	349, 594, 730, 928, 1081
LmnI	GCTCC	3 cut(s)	88, 185, 943
LpnPI	CCDG	5 cut(s)	216, 468, 682, 855, 978
LweI	GCATC	2 cut(s)	451, 900
MaeI	CTAG	3 cut(s)	195, 650, 713
MaeII	ACGT	3 cut(s)	571, 820, 847
MaeIII	GTNAC	1 cut(s)	985
MalI	GATC	5 cut(s)	351, 596, 732, 930, 1083
MboI	GATC	5 cut(s)	349, 594, 730, 928, 1081
MboII	GAAGA	4 cut(s)	27, 578, 803, 929
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	940
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	1 cut(s)	761
Mph1103I	ATGCAT	4 cut(s)	612, 893, 903, 1075
MseI	TTAA	5 cut(s)	210, 479, 636, 954, 1038
MslI	CAYNNNNRTG	1 cut(s)	896
MspA1I	CMGCKG	2 cut(s)	425, 458
MspI	CCGG	1 cut(s)	669
MunI	CAATTG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	441
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	1058
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	5 cut(s)	349, 594, 730, 928, 1081
NlaIV	GGNNCC	4 cut(s)	267, 578, 840, 1094
NmeAIII	GCCGAG	1 cut(s)	559
NsiI	ATGCAT	4 cut(s)	612, 893, 903, 1075
NspI	RCATGY	3 cut(s)	112, 610, 891
NspV	TTCGAA	2 cut(s)	304, 433
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	727
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	273, 646
PinAI	ACCGGT	1 cut(s)	668
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PshBI	ATTAAT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	642
PspN4I	GGNNCC	4 cut(s)	267, 578, 840, 1094
PspPI	GGNCC	2 cut(s)	740, 839
PsuI	RGATCY	1 cut(s)	594
PvuII	CAGCTG	2 cut(s)	425, 458
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	896
SaqAI	TTAA	5 cut(s)	210, 479, 636, 954, 1038
Sau3AI	GATC	5 cut(s)	349, 594, 730, 928, 1081
Sau96I	GGNCC	2 cut(s)	740, 839
SchI	GAGTC	1 cut(s)	782
SduI	GDGCHC	1 cut(s)	940
SfaNI	GCATC	2 cut(s)	451, 900
SfuI	TTCGAA	2 cut(s)	304, 433
SinI	GGWCC	2 cut(s)	740, 839
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
SpeI	ACTAGT	1 cut(s)	712
SphI	GCATGC	1 cut(s)	610
SsiI	CCGC	2 cut(s)	269, 511
SspI	AATATT	1 cut(s)	476
SspMI	CTAG	3 cut(s)	195, 650, 713
TaaI	ACNGT	1 cut(s)	1005
TaiI	ACGT	3 cut(s)	574, 823, 850
TaqI	TCGA	7 cut(s)	173, 220, 304, 433, 915, 1008, 1024
TfiI	GAWTC	2 cut(s)	273, 646
Tru1I	TTAA	5 cut(s)	210, 479, 636, 954, 1038
Tru9I	TTAA	5 cut(s)	210, 479, 636, 954, 1038
TspDTI	ATGAA	5 cut(s)	66, 314, 486, 716, 1008
TspGWI	ACGGA	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	740, 839
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	2 cut(s)	287, 416
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	3 cut(s)	112, 610, 891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XmiI	GTMKAC	3 cut(s)	295, 707, 1105
XspI	CTAG	3 cut(s)	195, 650, 713
Zsp2I	ATGCAT	4 cut(s)	612, 893, 903, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.