Rmu_sc0002666.1_g000023

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002666.1
OG0014879
Physical Location & Seq
Forward (+)
95107 .. 96640
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002666.1_g000023.1.cds

Sequence Viewer

Length: 1008 bp
atgcccactacaatggatccatcccaaatatcatcatcctctctgtcttcaaatggaaccattgagtattataattctgtcttggccgcatttgatcgggagcaagatttgttacttcgtacgtatgctaacaacaatctcctcttggcggaacatctcaacgacgaagaggacgatgctcaatcacaaaggagaggtgccgttcctggtcacatagttatttatcgtgatcgagaagctgctgcacacaatttgtttccagactattttgcagagccgaaaccgaaaaccgaaccgaacataatcggttcggctcggtttttttgtttcggttcggtttttttcggctacgcttgggcaggtgcttatgcagggcgtagtggatcgccgacaattattcttgaagcagttgctgattatgatctttggataaggcatgcatattttggcttaccaagctccaacaatgacatcaatgttttggaagcatcctacttatttgtggagcttgatgcaggtaaatcacctccatgtacgtattttattaaggataagcaatatgatgccggttattacttagctgatggcatctaccccaagtggtccacccttgttcaaactattcatgatcctcaaggtcgaaaaaaacaattttttgccacgaaacaagaatcatgtaggaaagacgttgaacatgtttttggcgttcttcagtcacgttgggcaatggttaagggtctaatacgattttggaaaaaacgtgttttacatgatataatgactacatgtatcattatgcacaatatgatcattgaggatgagcgtgatttgacagcttcaattagagaatttaatcatgcacctgcccctattgttgagatggttgttgatgaagatgcacgatttaatcagtttcttgctcgaatcaaggacagaaaggctcattttgagctttgggatgcattgattgatcatctatgggatcatcatgctaaagatgaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

335

Amino Acids

38.38

Weight (kDa)

5.53

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AarI CACCTGC 2 cut(s) 350, 871
Acc36I ACCTGC 3 cut(s) 350, 506, 871
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 2 cut(s) 87, 149
AclWI GGATC 5 cut(s) 11, 24, 391, 623, 990
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 1 cut(s) 695
AfaI GTAC 2 cut(s) 121, 535
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 3 cut(s) 694, 760, 785
AgsI TTSAA 5 cut(s) 51, 404, 617, 692, 840
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
AluBI AGCT 7 cut(s) 239, 459, 508, 581, 836, 952, 1004
AluI AGCT 7 cut(s) 239, 459, 508, 581, 836, 952, 1004
AlwI GGATC 5 cut(s) 11, 24, 391, 623, 990
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 239, 242
ApoI RAATTY 1 cut(s) 848
AspS9I GGNCC 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 516
AvaII GGWCC 1 cut(s) 603
BamHI GGATCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 226, 229
BccI CCATC 3 cut(s) 28, 578, 874
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 2 cut(s) 807, 970
BfuAI ACCTGC 3 cut(s) 350, 506, 871
BisI GCNGC 3 cut(s) 87, 240, 243
BlsI GCNGC 3 cut(s) 88, 241, 244
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 603
BmiI GGNNCC 3 cut(s) 18, 58, 199
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 7 cut(s) 166, 497, 502, 553, 597, 886, 949
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 618
BsaAI YACGTR 2 cut(s) 123, 537
BsaBI GATNNNNATC 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 5 cut(s) 20, 35, 488, 823, 964
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 732
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 226, 229
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 567
BsiWI CGTACG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
BspACI CCGC 2 cut(s) 87, 149
BspANI GGCC 1 cut(s) 86
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 18, 58, 199
BspMI ACCTGC 3 cut(s) 350, 506, 871
BspPI GGATC 5 cut(s) 11, 24, 391, 623, 990
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 566
BssMI GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 162
BstBAI YACGTR 2 cut(s) 123, 537
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 577
BstF5I GGATG 5 cut(s) 20, 35, 488, 823, 964
BstKTI GATC 9 cut(s) 19, 97, 232, 386, 424, 631, 810, 973, 985
BstMBI GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 3 cut(s) 440, 698, 789
BstSCI CCNGG 1 cut(s) 205
BstSNI TACGTA 2 cut(s) 123, 537
BstV1I GCAGC 2 cut(s) 226, 229
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 5 cut(s) 20, 35, 488, 823, 964
BveI ACCTGC 3 cut(s) 350, 506, 871
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 603
Csp6I GTAC 2 cut(s) 120, 534
CviAII CATG 9 cut(s) 437, 531, 626, 675, 695, 770, 786, 857, 989
CviQI GTAC 2 cut(s) 120, 534
DdeI CTNAG 1 cut(s) 577
DpnI GATC 9 cut(s) 18, 96, 231, 385, 423, 630, 809, 972, 984
DpnII GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 164
Eco105I TACGTA 2 cut(s) 123, 537
Eco47I GGWCC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 2 cut(s) 442, 964
FaeI CATG 9 cut(s) 440, 534, 629, 678, 698, 773, 789, 860, 992
FatI CATG 9 cut(s) 436, 530, 625, 674, 694, 769, 785, 856, 988
FbaI TGATCA 2 cut(s) 807, 970
Fnu4HI GCNGC 3 cut(s) 87, 240, 243
FokI GGATG 5 cut(s) 7, 22, 475, 830, 971
Fsp4HI GCNGC 3 cut(s) 87, 240, 243
GluI GCNGC 3 cut(s) 87, 240, 243
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 567
Hin1II CATG 9 cut(s) 440, 534, 629, 678, 698, 773, 789, 860, 992
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 2 cut(s) 671, 924
HpaII CCGG 1 cut(s) 567
HphI GGTGA 1 cut(s) 516
Hpy166II GTNNAC 1 cut(s) 606
Hpy188III TCNNGA 6 cut(s) 98, 227, 233, 260, 401, 626
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 1 cut(s) 167
HpyCH4IV ACGT 5 cut(s) 122, 536, 687, 718, 760
HpyCH4V TGCA 9 cut(s) 245, 272, 371, 440, 515, 799, 860, 899, 962
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 1 cut(s) 577
HpySE526I ACGT 5 cut(s) 122, 536, 687, 718, 760
Hsp92II CATG 9 cut(s) 440, 534, 629, 678, 698, 773, 789, 860, 992
Ksp22I TGATCA 2 cut(s) 807, 970
Kzo9I GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
LmnI GCTCC 3 cut(s) 100, 464, 505
LpnPI CCDG 8 cut(s) 192, 219, 273, 345, 357, 501, 580, 876
Lsp1109I GCAGC 2 cut(s) 226, 229
LweI GCATC 7 cut(s) 166, 497, 502, 553, 597, 886, 949
MaeII ACGT 5 cut(s) 122, 536, 687, 718, 760
MaeIII GTNAC 3 cut(s) 111, 209, 714
MalI GATC 9 cut(s) 18, 96, 231, 385, 423, 630, 809, 972, 984
MboI GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
MboII GAAGA 4 cut(s) 39, 179, 701, 905
MflI RGATCY 1 cut(s) 16
MluCI AATT 6 cut(s) 73, 250, 393, 650, 840, 848
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 7 cut(s) 49, 152, 163, 188, 537, 642, 808
Mph1103I ATGCAT 2 cut(s) 442, 964
MseI TTAA 4 cut(s) 546, 732, 852, 906
MslI CAYNNNNRTG 2 cut(s) 11, 529
MspI CCGG 1 cut(s) 567
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 456
NdeII GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
NlaIII CATG 9 cut(s) 440, 534, 629, 678, 698, 773, 789, 860, 992
NlaIV GGNNCC 3 cut(s) 18, 58, 199
NmuCI GTSAC 2 cut(s) 209, 714
NsiI ATGCAT 2 cut(s) 442, 964
NspI RCATGY 3 cut(s) 440, 698, 789
PaeI GCATGC 1 cut(s) 440
PagI TCATGA 1 cut(s) 625
PaqCI CACCTGC 2 cut(s) 350, 871
PciI ACATGT 2 cut(s) 694, 785
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 671, 924
Pfl23II CGTACG 1 cut(s) 119
PkrI GCNGC 3 cut(s) 88, 241, 244
Ppu21I YACGTR 2 cut(s) 123, 537
PscI ACATGT 2 cut(s) 694, 785
PsiI TTATAA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspLI CGTACG 1 cut(s) 119
PspN4I GGNNCC 3 cut(s) 18, 58, 199
PspPI GGNCC 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 121, 535
RsaNI GTAC 2 cut(s) 120, 534
RseI CAYNNNNRTG 2 cut(s) 11, 529
SaqAI TTAA 4 cut(s) 546, 732, 852, 906
SatI GCNGC 3 cut(s) 87, 240, 243
Sau3AI GATC 9 cut(s) 16, 94, 229, 383, 421, 628, 807, 970, 982
Sau96I GGNCC 1 cut(s) 603
ScrFI CCNGG 1 cut(s) 207
SfaNI GCATC 7 cut(s) 166, 497, 502, 553, 597, 886, 949
SinI GGWCC 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 11, 529
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
SnaBI TACGTA 2 cut(s) 123, 537
SphI GCATGC 1 cut(s) 440
Sse9I AATT 6 cut(s) 73, 250, 393, 650, 840, 848
SsiI CCGC 2 cut(s) 87, 149
StyD4I CCNGG 1 cut(s) 205
TaiI ACGT 5 cut(s) 125, 539, 690, 721, 763
TaqI TCGA 3 cut(s) 232, 640, 922
TasI AATT 6 cut(s) 73, 250, 393, 650, 840, 848
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 671, 924
Tru1I TTAA 4 cut(s) 546, 732, 852, 906
Tru9I TTAA 4 cut(s) 546, 732, 852, 906
TseFI GTSAC 2 cut(s) 209, 714
TseI GCWGC 2 cut(s) 239, 242
Tsp45I GTSAC 2 cut(s) 209, 714
TspDTI ATGAA 2 cut(s) 614, 906
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 1 cut(s) 848
XceI RCATGY 3 cut(s) 440, 698, 789
Zsp2I ATGCAT 2 cut(s) 442, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.