Rw7G024320

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014879
Physical Location & Seq
Reverse (-)
29830376 .. 29831717
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024320.1

Sequence Viewer

Length: 1005 bp
ATGAGTAATTCCCAAATATCATCATACTCTTTGTCTTCAAACGGAACAGATGATTATTATTATCGGGACGACGAGGCCGAATCGAGGCGTAGAGGAGCAGTTCCTGGCCATATAGTTATTAATCGTCCTCGACAGGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGTTCCGCGATTCGGAGAAGCAAAATTTCGCAGACGATTTCGAATAAGCAAAAGTTTATTTCATCAAATTGCGGAAGCCATCAAAGATCACCACAATTTCTTTGTGGAACAACGCGGTGGTATTGGTAAGCTCAGATTATCATCTTTGCAAAAATTTACAGCTATTTTTCGAATGCTTGCATATGGTGTACCAGCTGATGCTCTTGATGAATATTTAAAAATTGGTGAGTCTACTACAATTCGATGTATGAAAAGAACACCTAACGTCGAGGATGTTGTGAGACTTTTGTATATGGGTGAAGAACCATCTCACCTATTTGCAAATCTTGCGGAAGGTAAATCTCCTCCCGTTAATTGTAAGATTCTAGAAAAAGATTATGACACCGGTTATTATTTAGCCGATGGTATATATCCTAAGTGGTCTACACTAGTGCAAACTATTCATGATCCTCAAGGTCCAAAAAAAGTATTGTTTGCCAAAAAACAAGAGTCGTGTCGGAAGGATGTTGAACGAGCATTTGGAGTTCTTCAATCACGTTGGGCAATTGTCAAGGGACCAGCACGTTTTTGGAATAAATGTGTTTTACATGATATAATGACTACATGCATCATAATGCATAACATGATAATCGAAGATGAGCGTGATCTAAGTGCTCCAATAAATGATTTCAATCAAGCCTCTGCATTATCTGTTGAGTTGGTAACTAATGAAACTACACAGTTCGAGGAGTTCCTTGCTCGACATAGGAAAATTAAAGACAAGTCGGCTCATATTGCACTTCGTAATGCATTGATTGATCATATATGGAACCGATATGGTATACATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

334

Amino Acids

38.49

Weight (kDa)

8.79

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 160 - 274 1e-53 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 404, 596, 994
AccII CGCG 2 cut(s) 181, 288
AciI CCGC 4 cut(s) 179, 245, 288, 503
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 197, 326
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 84, 185
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 39, 683, 704, 844
AhlI ACTAGT 1 cut(s) 601
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AluBI AGCT 4 cut(s) 140, 304, 335, 368
AluI AGCT 4 cut(s) 140, 304, 335, 368
Alw21I GWGCWC 1 cut(s) 829
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 2 cut(s) 75, 106
ApoI RAATTY 2 cut(s) 197, 326
AseI ATTAAT 1 cut(s) 120
AsiGI ACCGGT 1 cut(s) 557
AspS9I GGNCC 2 cut(s) 629, 728
AsuHPI GGTGA 4 cut(s) 254, 410, 476, 482
AsuII TTCGAA 2 cut(s) 214, 343
AvaII GGWCC 2 cut(s) 629, 728
BalI TGGCCA 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 829
BbvCI CCTCAGC 1 cut(s) 171
BccI CCATC 3 cut(s) 260, 487, 569
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 1 cut(s) 448
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 2 cut(s) 539, 602
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 629, 728
BmgT120I GGNCC 2 cut(s) 629, 728
BmiI GGNNCC 3 cut(s) 177, 729, 983
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 361, 789
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 2 cut(s) 214, 343
BpuEI CTTGAG 1 cut(s) 609
BsaBI GATNNNNATC 2 cut(s) 313, 843
BsaWI WCCGGW 1 cut(s) 557
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 185
Bse118I RCCGGY 1 cut(s) 557
Bse8I GATNNNNATC 2 cut(s) 313, 843
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 451, 682
BseJI GATNNNNATC 2 cut(s) 313, 843
BseLI CCNNNNNNNGG 2 cut(s) 84, 185
BseMII CTCAG 2 cut(s) 162, 319
BseRI GAGGAG 3 cut(s) 108, 507, 914
Bsh1236I CGCG 2 cut(s) 181, 288
BshFI GGCC 2 cut(s) 77, 108
BshTI ACCGGT 1 cut(s) 557
BsiHKAI GWGCWC 1 cut(s) 829
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 2 cut(s) 80, 741
BslI CCNNNNNNNGG 2 cut(s) 84, 185
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 80, 741
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 2 cut(s) 77, 108
Bsp119I TTCGAA 2 cut(s) 214, 343
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 4 cut(s) 259, 619, 817, 970
BspACI CCGC 4 cut(s) 179, 245, 288, 503
BspANI GGCC 2 cut(s) 77, 108
BspCNI CTCAG 2 cut(s) 163, 318
BspFNI CGCG 2 cut(s) 181, 288
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 177, 729, 983
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 2 cut(s) 214, 343
BsrFI RCCGGY 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 557
BssMI GATC 4 cut(s) 259, 619, 817, 970
BssNAI GTATAC 1 cut(s) 995
Bst1107I GTATAC 1 cut(s) 995
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 894
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBI TTCGAA 2 cut(s) 214, 343
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 171, 305, 588, 821
BstF5I GGATG 2 cut(s) 451, 682
BstFNI CGCG 2 cut(s) 181, 288
BstKTI GATC 4 cut(s) 262, 622, 820, 973
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 4 cut(s) 259, 619, 817, 970
BstMWI GCNNNNNNNGC 2 cut(s) 500, 947
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 780
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 2 cut(s) 181, 288
BstV2I GAAGAC 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 995
BsuRI GGCC 2 cut(s) 77, 108
BtsCI GGATG 2 cut(s) 451, 682
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 104
CciI TCATGA 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 2 cut(s) 629, 728
Csp6I GTAC 1 cut(s) 362
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 6 cut(s) 157, 617, 761, 777, 796, 998
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 4 cut(s) 171, 305, 588, 821
DpnI GATC 4 cut(s) 261, 621, 819, 972
DpnII GATC 4 cut(s) 259, 619, 817, 970
DraI TTTAAA 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 629, 728
EcoRII CCWGG 1 cut(s) 103
EcoT22I ATGCAT 3 cut(s) 782, 792, 964
FaeI CATG 6 cut(s) 160, 620, 764, 780, 799, 1001
FaqI GGGAC 2 cut(s) 80, 741
FatI CATG 6 cut(s) 156, 616, 760, 776, 795, 997
FauNDI CATATG 1 cut(s) 355
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 3 cut(s) 404, 596, 994
FokI GGATG 2 cut(s) 458, 689
FspBI CTAG 2 cut(s) 539, 602
HaeIII GGCC 2 cut(s) 77, 108
HapII CCGG 1 cut(s) 558
Hin1II CATG 6 cut(s) 160, 620, 764, 780, 799, 1001
HinfI GANTC 5 cut(s) 80, 183, 401, 535, 662
HpaII CCGG 1 cut(s) 558
HphI GGTGA 4 cut(s) 254, 410, 476, 482
Hpy166II GTNNAC 4 cut(s) 362, 405, 597, 995
Hpy188I TCNGA 3 cut(s) 188, 308, 672
Hpy188III TCNNGA 4 cut(s) 65, 377, 539, 617
Hpy8I GTNNAC 4 cut(s) 362, 405, 597, 995
Hpy99I CGWCG 2 cut(s) 74, 443
HpyAV CCTTC 2 cut(s) 500, 667
HpyCH4III ACNGT 1 cut(s) 894
HpyCH4IV ACGT 3 cut(s) 438, 709, 736
HpyCH4V TGCA 9 cut(s) 322, 353, 494, 607, 780, 790, 857, 950, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 947
HpyF3I CTNAG 4 cut(s) 171, 305, 588, 821
HpySE526I ACGT 3 cut(s) 438, 709, 736
Hsp92II CATG 6 cut(s) 160, 620, 764, 780, 799, 1001
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 4 cut(s) 259, 619, 817, 970
LmnI GCTCC 2 cut(s) 95, 832
LpnPI CCDG 7 cut(s) 90, 117, 119, 126, 378, 571, 744
LweI GCATC 2 cut(s) 361, 789
MaeI CTAG 2 cut(s) 539, 602
MaeII ACGT 3 cut(s) 438, 709, 736
MaeIII GTNAC 1 cut(s) 874
MalI GATC 4 cut(s) 261, 621, 819, 972
MboI GATC 4 cut(s) 259, 619, 817, 970
MboII GAAGA 4 cut(s) 27, 485, 692, 818
MfeI CAATTG 1 cut(s) 717
MhlI GDGCHC 1 cut(s) 829
MlsI TGGCCA 1 cut(s) 108
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 2 cut(s) 410, 671
MmeI TCCRAC 1 cut(s) 650
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 3 cut(s) 782, 792, 964
MscI TGGCCA 1 cut(s) 108
MseI TTAA 4 cut(s) 120, 389, 525, 927
MslI CAYNNNNRTG 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 2 cut(s) 181, 288
MwoI GCNNNNNNNGC 2 cut(s) 500, 947
NdeI CATATG 1 cut(s) 355
NdeII GATC 4 cut(s) 259, 619, 817, 970
NlaIII CATG 6 cut(s) 160, 620, 764, 780, 799, 1001
NlaIV GGNNCC 3 cut(s) 177, 729, 983
NsiI ATGCAT 3 cut(s) 782, 792, 964
NspI RCATGY 1 cut(s) 780
NspV TTCGAA 2 cut(s) 214, 343
PagI TCATGA 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 80, 183, 535
PinAI ACCGGT 1 cut(s) 557
PleI GAGTC 2 cut(s) 409, 670
PpsI GAGTC 2 cut(s) 409, 670
PshBI ATTAAT 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 177, 729, 983
PspPI GGNCC 2 cut(s) 629, 728
PstNI CAGNNNCTG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 4 cut(s) 120, 389, 525, 927
Sau3AI GATC 4 cut(s) 259, 619, 817, 970
Sau96I GGNCC 2 cut(s) 629, 728
SchI GAGTC 2 cut(s) 410, 671
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 829
SfaNI GCATC 2 cut(s) 361, 789
SfuI TTCGAA 2 cut(s) 214, 343
SinI GGWCC 2 cut(s) 629, 728
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SpeI ACTAGT 1 cut(s) 601
SsiI CCGC 4 cut(s) 179, 245, 288, 503
SspI AATATT 1 cut(s) 386
SspMI CTAG 2 cut(s) 539, 602
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 894
TaiI ACGT 3 cut(s) 441, 712, 739
TaqI TCGA 9 cut(s) 83, 130, 214, 343, 415, 441, 804, 897, 913
TfiI GAWTC 3 cut(s) 80, 183, 535
Tru1I TTAA 4 cut(s) 120, 389, 525, 927
Tru9I TTAA 4 cut(s) 120, 389, 525, 927
TspDTI ATGAA 5 cut(s) 224, 396, 437, 605, 897
TspGWI ACGGA 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 629, 728
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 2 cut(s) 197, 326
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmiI GTMKAC 3 cut(s) 404, 596, 994
XspI CTAG 2 cut(s) 539, 602
Zsp2I ATGCAT 3 cut(s) 782, 792, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.