Rw5G041660

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014879
Physical Location & Seq
Forward (+)
73254643 .. 73255983
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041660.1

Sequence Viewer

Length: 1185 bp
ATGAGTAATTCCCAAATATCATCATCCTCTTTGTCTTCAAACGGAACAGATGATTATTATTATCGGGTTATGGCTTCATTTGATGAGGAGCAAGATTTATTGCTTCGCATGTATGCGAATAATAATCACCTCTTGGTAGAGTTGGATGACAATGAGGACGATGAGGCTGAATCGAGACGTAGAGGAGCAGCTCCTGGAGATATAGTTATTAATCGTCCTCGACAAGAAGCTGGATATAATCTATACATGGACTACTTTGCTGAGGTTCCGCGATTTGGAGAAGCAAAATTTTGTAGACGATTTCGAATGAGCAAAAGTTTATTTCATCAAATTGCGGAAGCCGTCAAAGATCACGACAATTTCTTTGTGCAACAACGCGATGGTATTGGTAAGCTCGGATTATCATCTTTGCAAAAATTTACAGCTGTTTTTCGAATGCTTGCATATGGTGTACCAGCTGATGCTCTTGATGAATATTTAAAAATTGGTGAGTCTATTGCAATTCGATGTATGAAAAGGTTTTGTCGAGCTGTTATAGAGGTCTTTGGAAACCGCTATCTAAGAACACCTAACGCCGAGGATGTTGCGAGACTTTTGTATATAGGTGAAGAACGTGGGTTCCCAGGAATGTTAGGGAGCTTAGATTGCATGCATTGGCCATCTCACCTATTTGCAAATCTTGCGGAAGGTAAATCTCCTCCCGTTAATTATAAGATTCTAGAAAAAGATTATGACACCGGTTATTATTTAGCCGATGGTATATATCCTAAGTGGTCTACACTAGTGCAAACTATTCATGATCCTCAAGGTCCAAAAAAAGTATTGTTTGCCAAAAAACAAGAGTCGTGTCAGAAGGATGTTGAACGAGCATTTGGAGTTCTTCAATCACGTTGGGCAATTGTCAAGGGACCAGCACGTTTTTGGAATAAATGTGTTTTACATGATATAATGACTACATGCATCATAATGCATAACATGATAATCGAAGATGAGCGTGATCTAAGTGCTCCAATAAATGATTTCAATCAAGCCCCTGCATTATCTGTTGAGTTGGTAACTAATGAAACTACACAGTTCGAGGAGTTCCTTGCTCGACATAGGAAAATTAAAGATAAGTCGGCTCATATTGCACTTCGTAATGCATTGATTGATCATATATGGAACCGACATGGTATACATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

394

Amino Acids

45.21

Weight (kDa)

6.24

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 185 - 219 8.1e-12 Plant transposon protein
Plant_tran PF04827 221 - 334 1.1e-53 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
AccI GTMKAC 3 cut(s) 295, 776, 1174
AccII CGCG 2 cut(s) 271, 378
AciI CCGC 4 cut(s) 269, 335, 553, 683
AclWI GGATC 1 cut(s) 794
AcoI YGGCCR 1 cut(s) 656
AcsI RAATTY 2 cut(s) 287, 416
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 275
AgeI ACCGGT 1 cut(s) 737
AgsI TTSAA 4 cut(s) 39, 863, 884, 1024
AhlI ACTAGT 1 cut(s) 781
AjnI CCWGG 2 cut(s) 193, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 855, 887
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
AluBI AGCT 7 cut(s) 191, 230, 394, 425, 458, 530, 639
AluI AGCT 7 cut(s) 191, 230, 394, 425, 458, 530, 639
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 2 cut(s) 169, 583
AlwI GGATC 1 cut(s) 794
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 287, 416
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AseI ATTAAT 1 cut(s) 210
AsiGI ACCGGT 1 cut(s) 737
AspS9I GGNCC 2 cut(s) 809, 908
AsuHPI GGTGA 4 cut(s) 119, 500, 617, 656
AsuII TTCGAA 2 cut(s) 304, 433
AvaII GGWCC 2 cut(s) 809, 908
BalI TGGCCA 1 cut(s) 658
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 1009
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 200
BccI CCATC 3 cut(s) 374, 667, 749
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 2 cut(s) 195, 624
BclI TGATCA 1 cut(s) 1150
BcoDI GTCTC 2 cut(s) 169, 583
BcuI ACTAGT 1 cut(s) 781
BfaI CTAG 2 cut(s) 719, 782
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 195, 624
Bme18I GGWCC 2 cut(s) 809, 908
BmgT120I GGNCC 2 cut(s) 809, 908
BmiI GGNNCC 4 cut(s) 267, 620, 909, 1163
BmrFI CCNGG 2 cut(s) 195, 624
BmsI GCATC 2 cut(s) 451, 969
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 261
Bpu14I TTCGAA 2 cut(s) 304, 433
BpuEI CTTGAG 1 cut(s) 789
BsaBI GATNNNNATC 2 cut(s) 403, 1023
BsaJI CCNNGG 2 cut(s) 576, 622
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 737
Bse8I GATNNNNATC 2 cut(s) 403, 1023
BseBI CCWGG 2 cut(s) 195, 624
BseDI CCNNGG 2 cut(s) 576, 622
BseGI GGATG 4 cut(s) 23, 151, 586, 862
BseJI GATNNNNATC 2 cut(s) 403, 1023
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 4 cut(s) 101, 198, 687, 1094
BseXI GCAGC 1 cut(s) 200
Bsh1236I CGCG 2 cut(s) 271, 378
BshFI GGCC 1 cut(s) 658
BshTI ACCGGT 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 1009
BsiSI CCGG 1 cut(s) 738
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 169, 583
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 1 cut(s) 658
Bsp119I TTCGAA 2 cut(s) 304, 433
Bsp1286I GDGCHC 1 cut(s) 1009
Bsp143I GATC 4 cut(s) 349, 799, 997, 1150
BspACI CCGC 4 cut(s) 269, 335, 553, 683
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 271, 378
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 4 cut(s) 267, 620, 909, 1163
BspPI GGATC 1 cut(s) 794
BspT104I TTCGAA 2 cut(s) 304, 433
BsrFI RCCGGY 1 cut(s) 737
BssAI RCCGGY 1 cut(s) 737
BssECI CCNNGG 2 cut(s) 576, 622
BssMI GATC 4 cut(s) 349, 799, 997, 1150
BssNAI GTATAC 1 cut(s) 1175
Bst1107I GTATAC 1 cut(s) 1175
Bst2UI CCWGG 2 cut(s) 195, 624
Bst4CI ACNGT 1 cut(s) 1074
BstAPI GCANNNNNTGC 1 cut(s) 680
BstBI TTCGAA 2 cut(s) 304, 433
BstC8I GCNNGC 2 cut(s) 441, 650
BstDEI CTNAG 5 cut(s) 261, 560, 640, 768, 1001
BstF5I GGATG 4 cut(s) 23, 151, 586, 862
BstFNI CGCG 2 cut(s) 271, 378
BstKTI GATC 4 cut(s) 352, 802, 1000, 1153
BstMAI GTCTC 2 cut(s) 169, 583
BstMBI GATC 4 cut(s) 349, 799, 997, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 645, 680, 1127
BstNI CCWGG 2 cut(s) 195, 624
BstNSI RCATGY 3 cut(s) 112, 652, 960
BstSCI CCNGG 2 cut(s) 193, 622
BstUI CGCG 2 cut(s) 271, 378
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 1175
BsuRI GGCC 1 cut(s) 658
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 4 cut(s) 23, 151, 586, 862
Cac8I GCNNGC 2 cut(s) 441, 650
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 796
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 2 cut(s) 809, 908
Csp6I GTAC 1 cut(s) 452
CspAI ACCGGT 1 cut(s) 737
CviAII CATG 9 cut(s) 109, 247, 649, 797, 941, 957, 976, 1169, 1178
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 5 cut(s) 261, 560, 640, 768, 1001
DpnI GATC 4 cut(s) 351, 801, 999, 1152
DpnII GATC 4 cut(s) 349, 799, 997, 1150
DraI TTTAAA 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 656
Eco47I GGWCC 2 cut(s) 809, 908
EcoRII CCWGG 2 cut(s) 193, 622
EcoT22I ATGCAT 4 cut(s) 654, 962, 972, 1144
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 9 cut(s) 112, 250, 652, 800, 944, 960, 979, 1172, 1181
FaqI GGGAC 1 cut(s) 921
FatI CATG 9 cut(s) 108, 246, 648, 796, 940, 956, 975, 1168, 1177
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 1150
FblI GTMKAC 3 cut(s) 295, 776, 1174
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 4 cut(s) 10, 158, 593, 869
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 719, 782
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 658
HapII CCGG 1 cut(s) 738
Hin1II CATG 9 cut(s) 112, 250, 652, 800, 944, 960, 979, 1172, 1181
HinfI GANTC 4 cut(s) 170, 491, 715, 842
HpaII CCGG 1 cut(s) 738
HphI GGTGA 4 cut(s) 119, 500, 617, 656
Hpy166II GTNNAC 4 cut(s) 296, 452, 777, 1175
Hpy188I TCNGA 2 cut(s) 398, 852
Hpy188III TCNNGA 5 cut(s) 174, 353, 467, 719, 797
Hpy8I GTNNAC 4 cut(s) 296, 452, 777, 1175
HpyAV CCTTC 2 cut(s) 680, 847
HpyCH4III ACNGT 1 cut(s) 1074
HpyCH4IV ACGT 4 cut(s) 178, 613, 889, 916
HpyF10VI GCNNNNNNNGC 3 cut(s) 645, 680, 1127
HpyF3I CTNAG 5 cut(s) 261, 560, 640, 768, 1001
HpySE526I ACGT 4 cut(s) 178, 613, 889, 916
Hsp92II CATG 9 cut(s) 112, 250, 652, 800, 944, 960, 979, 1172, 1181
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 4 cut(s) 349, 799, 997, 1150
LmnI GCTCC 5 cut(s) 88, 185, 196, 636, 1012
LpnPI CCDG 9 cut(s) 180, 207, 216, 468, 609, 636, 751, 924, 1047
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 2 cut(s) 451, 969
MaeI CTAG 2 cut(s) 719, 782
MaeII ACGT 4 cut(s) 178, 613, 889, 916
MaeIII GTNAC 1 cut(s) 1054
MalI GATC 4 cut(s) 351, 801, 999, 1152
MboI GATC 4 cut(s) 349, 799, 997, 1150
MboII GAAGA 4 cut(s) 27, 620, 872, 998
MfeI CAATTG 1 cut(s) 897
MhlI GDGCHC 1 cut(s) 1009
MlsI TGGCCA 1 cut(s) 658
MluNI TGGCCA 1 cut(s) 658
MlyI GAGTC 2 cut(s) 500, 851
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 658
Mph1103I ATGCAT 4 cut(s) 654, 962, 972, 1144
MscI TGGCCA 1 cut(s) 658
MseI TTAA 4 cut(s) 210, 479, 705, 1107
MslI CAYNNNNRTG 1 cut(s) 965
Msp20I TGGCCA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 425, 458
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 2 cut(s) 195, 624
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 2 cut(s) 195, 624
MvnI CGCG 2 cut(s) 271, 378
MwoI GCNNNNNNNGC 3 cut(s) 645, 680, 1127
NdeI CATATG 1 cut(s) 445
NdeII GATC 4 cut(s) 349, 799, 997, 1150
NlaIII CATG 9 cut(s) 112, 250, 652, 800, 944, 960, 979, 1172, 1181
NlaIV GGNNCC 4 cut(s) 267, 620, 909, 1163
NmeAIII GCCGAG 1 cut(s) 601
NsiI ATGCAT 4 cut(s) 654, 962, 972, 1144
NspI RCATGY 3 cut(s) 112, 652, 960
NspV TTCGAA 2 cut(s) 304, 433
PaeI GCATGC 1 cut(s) 652
PagI TCATGA 1 cut(s) 796
PctI GAATGC 1 cut(s) 441
PfeI GAWTC 2 cut(s) 170, 715
PfoI TCCNGGA 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 737
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 2 cut(s) 499, 850
PpsI GAGTC 2 cut(s) 499, 850
PshBI ATTAAT 1 cut(s) 210
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 193, 622
PspGI CCWGG 2 cut(s) 193, 622
PspN4I GGNNCC 4 cut(s) 267, 620, 909, 1163
PspPI GGNCC 2 cut(s) 809, 908
PstNI CAGNNNCTG 1 cut(s) 194
PvuII CAGCTG 2 cut(s) 425, 458
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 965
SaqAI TTAA 4 cut(s) 210, 479, 705, 1107
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 4 cut(s) 349, 799, 997, 1150
Sau96I GGNCC 2 cut(s) 809, 908
SchI GAGTC 2 cut(s) 500, 851
ScrFI CCNGG 2 cut(s) 195, 624
SduI GDGCHC 1 cut(s) 1009
SfaNI GCATC 2 cut(s) 451, 969
SfuI TTCGAA 2 cut(s) 304, 433
SinI GGWCC 2 cut(s) 809, 908
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 804
SmoI CTYRAG 1 cut(s) 804
SpeI ACTAGT 1 cut(s) 781
SphI GCATGC 1 cut(s) 652
SsiI CCGC 4 cut(s) 269, 335, 553, 683
SspI AATATT 1 cut(s) 476
SspMI CTAG 2 cut(s) 719, 782
StyD4I CCNGG 2 cut(s) 193, 622
TaaI ACNGT 1 cut(s) 1074
TaiI ACGT 4 cut(s) 181, 616, 892, 919
TaqI TCGA 9 cut(s) 173, 220, 304, 433, 505, 526, 984, 1077, 1093
TfiI GAWTC 2 cut(s) 170, 715
Tru1I TTAA 4 cut(s) 210, 479, 705, 1107
Tru9I TTAA 4 cut(s) 210, 479, 705, 1107
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 6 cut(s) 66, 314, 486, 527, 785, 1077
TspGWI ACGGA 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 809, 908
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 2 cut(s) 287, 416
XbaI TCTAGA 1 cut(s) 718
XceI RCATGY 3 cut(s) 112, 652, 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 918
XmiI GTMKAC 3 cut(s) 295, 776, 1174
XspI CTAG 2 cut(s) 719, 782
Zsp2I ATGCAT 4 cut(s) 654, 962, 972, 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.