RchiOBHm_Chr4g0408181

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
30753462 .. 30770414
16953 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37935

Sequence Viewer

Length: 3567 bp
ATGGAAGAGGTATGCGAGGGCAAGGACTTCTCCTTCCCGAAGCAAGAGGAGAAGATTCTCCACTACTGGTCCCAAATCAAAGCCTTCGAGACTCAATTGTCTCTCACCGAACACATGCCCGAGTACGTCTTCTACGACGGTCCCCCCTTCGCCACCGGCCTCCCTCACTACGGCCACATATTGGCCGGCACCATCAAGGACATCATCACGCGTTACCAGTCCATGACCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTTCCCGTCGAGAACGAGATTGATAAGAAGCTCGACATCAGGCGCCGGGAACAGGTTCTCGAAATGGGGATCGATAAGTACAACGAGGAGTGCCGGAGCATTGTTACTCGGTTTGTGGAGGAATGGGAGAAGGTTATTACGCGAACTGGGCGGTGGATCGATTTTCGGAACGATTATAAGACCATGGACTTGAAGTTTATGGAGAGTGTGTGGTGGGTTTTTGCTCAGATATATGATAAGGGCCTTGTCTATAAGGGCTTCAAGGTCATGCCGTACAGCACCGGTTGCAAGACACCGCTTTCGAATTTCGAGGCTAATCAAGATTACAAGGATGTTCCTGATCCTGAAGTTATGGTGGCTTTTCCAATTATTGATGATCCACAAGAGGCAAGTTTTGTGGCTTGGACAACTACTCCGTGGACCCTTCCTAGCCATTTAGCGCTATGTGTCAATGCAAATTTTACTTATTTGAAGGTTCGCAACAAGTACTCAAAAAAAGTTTACGTCGTTGCTGAATCTCGATTGTCAGCTCTTCCTAATGACAAACCAAAAGAAAATGTACCAAATGGATCTGTTGATTCAAAAAAATTAAATTCAAAGACCAAGGGATCCTCGGGTGGGAAAAAGGAAGCAGTTGACACATCATATGAAGTGTTGGAGAAAATGACCGGGGCTTCATTGGTGGGGAAGAAGTATGAACCACCATTTGATTACTTTAAGGAGTTCTCTGATGTTGCATTTAGAGTTGTTGCGGACAACTATGTTACTGATGACAGTGGTACTGGAATTGTCCACTGTGCTCCTGCATTTGGTGAAGACGACTATCGTGTTTGCCTTGAAAATAAAGTTATCAGTAAGGGAGAGACCTTGATTGTAGCAGTTGATGAGGATGGATGCTTTACTGAAAAAATTACCGACTTCAGCAAGTGCTATGTCAAAAATGCAGATAAAGAAATTATTGAAGCACTGAAGCGGAAAGGAAGGCTTGTTAAGTCTGGAACCATTATGCATTCTTATCCCCACTGCCCAAGATCTAAAACTCCACTTATTCAAAGAGCTGTTCCAAGTTGGTTTATCCGGGTGGAGCAGTTGAAAGAAAAATTGTTAGAAAACAACAAGCAGACATACTGGGTTCCTGATTTTGTGAAGGAAAAACGATTCCACAATTGGCTGGAAAATGCAAGAGATTGGGCAGTTAGTCGAAGTAGATTCTGGGGCACTCCTCTTCCTGTGTGGATTAGTGAGGATGGTGGGGAAATAGTAGTTATGGATTCCATTGAGAAGCTCGAAAAGCTTTCCGGTGTTAAGGTTTTTGATCTTCACCGGCACAATATCGATCATATCACTATTCCATCTAGCCGTGGTCCTCAATTTGGTGTTCTTCGACGTATTGATGATGTGTTTGATTGTTGGTTTGAGAGTGGTTCCATGCCTTATGCTTATATCCACTATCCTTTTGAGAATGTTGAACTTTTTGAGAAAAACTTTCCTGGAAATTTTGTGGCTGAAGGGCTGGATCAGACTCGTGGATGGTTCTACACTCTTATGGTGTTATCTACCGCATTATTTGGGAAACCTGCTTTTAAGAATCTCATTTGCAATGGGCTCGTACTTGCTGAGGATGGAAAAAAAATGAGTAAAAGTCTGAAAAATTATCCTCCACCAATTGAAGTTATCGATCAGTATGGAGCTGATGCAGTACGATTATACCTAATTAACTCTCCTGTTGTGCGCGCGGAACCATTACGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTCAAGGATGTATTTCTTCCATGGTACAATGCATATAGGTTCCTTGTCCAGAACGCAAAGAGACTTGAGATTGAAGGGTTTGCCCCTTTTGTTCCTATTGATCAAGCCACTCTACAAAAGTCATCTAATGTGCTTGACCAGTGGATCTACTCAGCCACACAGAGTCTTGTGTATTTTGTCCGTCAGGAGATGAATGGTTATCGACTTTATACGGTGGTTCCATATCTTTTGAAGTTTCTAGACAACTTGACAAATATCTATGTGAGGTGCAATCGCAAGAGGTTGAAGGGTCGTACAGGTGAAGAAGATTGTAGGGTGGCGCTCTCAACACTTTACAATGTCCTTTTGGTATCATGTAAAGCAATGGCTCCATTAACACCATTTTTCACTGAGGTCCTTTTTCAAAATATGCGGAAAGTTTCCAACACGGCAGAGGAAAGCATTCATCATTGCAGCTTTCCTGAAGCAGAAGGCAAGAGGGATGAACGTATTGAGCAAAGTGTTGCAAGGATGATGACAATAATTGATCTTGCCCGTAATATTCGTGAGAGACATAACAAACCTCTTAAAACACCACTCAGGGAGATGGTTATTGTTCATCCTGATGTGGACTTTCTTGATGATATCGCTGGAAAGCTAAAAGAGTATGTGCTGGAGGAACTTAATGTGCGATCTCTTGTTCCATGTAGTGATACACTGAAGTATGCTTCATTACGTGCAGAGCCTGATTTCAGTGTTTTGGGTAAGCGGCTAGGAAAATATATGGGAATTGTTGCCAAAGAAGTCAAGGCAATGTCACAGGAAAGCATTCTAGCATTTGAGAAATCTGGAGAAGTTACTCTTTCTGGTCATTGCTTAAAGCTGACTGATATTAAGGTTGTTAGGGATTTCAAGTGTCCTGATGGCACTGCAGTAGACGACATGGATGCTACAGGAGATGGTGATGTTTTGGTGATTTTGGATTTACATTCCGATGAGTCGTTGGCTGATGCAGGTGTTGCTCGAGAGATTGTCAACAGAATCCAGAAGTTCAGAAAGAAATCTGCTCTAGAACCTACTGACTCGGTGGAGGTCTACTTTGACTCTTTGGATAAAGATAAAGCAGTTTCCCAAAGGATCTTGCAATCACAGGAACAATACATTAGGGATGCCATTGGTTCGCCGTTGCTTCCTTCAAGTTTGATGCCATCACATGCTGTCCCTGTTGGGGAAGAGAGTTTCCATGGGATTTCTGTTTCATTTGATACCGAACTTTCATTTGCTATCAAACTGGCCAGACCTGCCTTAGTTTTCAACTCGGATGCAATTGTTGCTTTATATTCAGGAAACTCAGAATTCGCAAGGTGTCTGCAAACGTACTTGTTGTCAAGGGATCATGCAAATCTGAAGACCGAGTTTCAACATGGAAACGGGAAGATAACTGTTGATTGCATTGAAAATGTGCCCGCTGTGAGTTTGGTGTTGAGGAAACATGTGTATTTGACTGTTGGGGAGTTCTTTTGTAGAACAAACTCTGAGTAG

Protein Analysis

1188

Amino Acids

135.59

Weight (kDa)

6.26

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 19 - 670 9.6e-157 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 728 - 877 3.1e-26 Anticodon-binding domain of tRNA ligase
DUF5915 PF19302 897 - 1063 2.6e-25 Domain of unknown function (DUF5915)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AarI CACCTGC 1 cut(s) 3029
AasI GACNNNNNNGTC 1 cut(s) 97
Acc36I ACCTGC 3 cut(s) 1855, 3029, 3334
AccB1I GGYRCC 2 cut(s) 188, 312
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 2 cut(s) 2961, 3120
AccII CGCG 5 cut(s) 211, 244, 412, 2004, 2006
AcoI YGGCCR 4 cut(s) 172, 183, 229, 3318
AcsI RAATTY 5 cut(s) 574, 727, 862, 1765, 3380
AcuI CTGAAG 7 cut(s) 636, 1174, 1259, 1797, 2529, 2765, 3452
AcyI GRCGYC 1 cut(s) 313
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 7 cut(s) 170, 181, 322, 888, 1079, 1643, 3253
AflIII ACRYGT 2 cut(s) 209, 3517
AgeI ACCGGT 1 cut(s) 551
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 1759
AluBI AGCT 9 cut(s) 301, 800, 1328, 1555, 1564, 1961, 2502, 2683, 2908
AluI AGCT 9 cut(s) 301, 800, 1328, 1555, 1564, 1961, 2502, 2683, 2908
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
AlwNI CAGNNNCTG 1 cut(s) 2771
Ama87I CYCGRG 3 cut(s) 119, 883, 3048
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 7 cut(s) 157, 172, 183, 229, 268, 511, 3318
ApeKI GCWGC 1 cut(s) 2499
ApoI RAATTY 5 cut(s) 574, 727, 862, 1765, 3380
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AsiGI ACCGGT 1 cut(s) 551
Asp700I GAANNNNTTC 3 cut(s) 324, 2487, 2853
AspLEI GCGC 6 cut(s) 246, 315, 712, 2004, 2006, 2368
AspS9I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
AsuC2I CCSGG 3 cut(s) 317, 940, 1349
AsuHPI GGTGA 6 cut(s) 97, 1094, 1583, 2357, 2999, 3010
AsuII TTCGAA 1 cut(s) 572
AvaI CYCGRG 3 cut(s) 119, 883, 3048
AvaII GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
BaeGI GKGCMC 2 cut(s) 1490, 3492
BalI TGGCCA 1 cut(s) 3320
BamHI GGATCC 1 cut(s) 878
BanI GGYRCC 2 cut(s) 188, 312
BanII GRGCYC 1 cut(s) 1878
BauI CACGAG 1 cut(s) 1794
BbsI GAAGAC 3 cut(s) 121, 1092, 3440
Bbv12I GWGCWC 1 cut(s) 1072
BbvCI CCTCAGC 1 cut(s) 1887
BbvI GCAGC 1 cut(s) 2511
BceAI ACGGC 6 cut(s) 187, 283, 526, 1614, 2490, 3193
BcgI CGANNNNNNTGC 4 cut(s) 1858, 1892, 2954, 2988
BciT130I CCWGG 1 cut(s) 1761
BclI TGATCA 1 cut(s) 2146
BcnI CCSGG 3 cut(s) 317, 940, 1349
BcoDI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BfaI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
BfmI CTRYAG 2 cut(s) 2955, 2976
BfoI RGCGCY 3 cut(s) 316, 713, 2369
BfuAI ACCTGC 3 cut(s) 1855, 3029, 3334
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 1301
BisI GCNGC 3 cut(s) 247, 2500, 2795
BlsI GCNGC 3 cut(s) 248, 2501, 2796
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 4 cut(s) 317, 940, 1349, 1761
Bme18I GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
BmeT110I CYCGRG 3 cut(s) 119, 883, 3048
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
BmrFI CCNGG 4 cut(s) 317, 940, 1349, 1761
BmrI ACTGGG 2 cut(s) 426, 1408
BmsI GCATC 7 cut(s) 1154, 1954, 2962, 3025, 3184, 3219, 3337
BmuI ACTGGG 2 cut(s) 426, 1408
BpiI GAAGAC 3 cut(s) 121, 1092, 3440
BpmI CTGGAG 2 cut(s) 2720, 2895
Bpu10I CCTNAGC 1 cut(s) 1887
Bpu14I TTCGAA 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 2132
BpuMI CCSGG 3 cut(s) 317, 940, 1349
Bsa29I ATCGAT 4 cut(s) 342, 429, 1605, 1947
BsaAI YACGTR 1 cut(s) 2762
BsaHI GRCGYC 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 9 cut(s) 265, 453, 686, 873, 882, 939, 1630, 2066, 3268
BsaWI WCCGGW 2 cut(s) 551, 1568
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 667, 697
Bsc4I CCNNNNNNNGG 7 cut(s) 170, 181, 322, 888, 1079, 1643, 3253
Bse118I RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
Bse1I ACTGG 7 cut(s) 71, 217, 421, 1057, 1403, 2185, 3321
Bse3DI GCAATG 5 cut(s) 1876, 2415, 2494, 2844, 2896
BseBI CCWGG 1 cut(s) 1761
BseCI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BseDI CCNNGG 9 cut(s) 265, 453, 686, 873, 882, 939, 1630, 2066, 3268
BseLI CCNNNNNNNGG 7 cut(s) 170, 181, 322, 888, 1079, 1643, 3253
BseMI GCAATG 5 cut(s) 1876, 2415, 2494, 2844, 2896
BseMII CTCAG 7 cut(s) 509, 1878, 2211, 2427, 2638, 3390, 3552
BseNI ACTGG 7 cut(s) 71, 217, 421, 1057, 1403, 2185, 3321
BsePI GCGCGC 1 cut(s) 2002
BseRI GAGGAG 3 cut(s) 62, 371, 1482
BseSI GKGCMC 2 cut(s) 1490, 3492
BseXI GCAGC 1 cut(s) 2511
BseYI CCCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 2784
Bsh1236I CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BshFI GGCC 7 cut(s) 159, 174, 185, 231, 270, 513, 3320
BshNI GGYRCC 2 cut(s) 188, 312
BshTI ACCGGT 1 cut(s) 551
BshVI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BsiHKAI GWGCWC 1 cut(s) 1072
BsiHKCI CYCGRG 3 cut(s) 119, 883, 3048
BslFI GGGAC 4 cut(s) 55, 126, 272, 3230
BslI CCNNNNNNNGG 7 cut(s) 170, 181, 322, 888, 1079, 1643, 3253
BsmAI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BsmFI GGGAC 4 cut(s) 55, 126, 272, 3230
BsmI GAATGC 3 cut(s) 1279, 2487, 2853
BsnI GGCC 7 cut(s) 159, 174, 185, 231, 270, 513, 3320
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 3 cut(s) 119, 883, 3048
Bsp119I TTCGAA 1 cut(s) 572
Bsp1286I GDGCHC 4 cut(s) 1072, 1490, 1878, 3492
Bsp19I CCATGG 3 cut(s) 453, 2066, 3268
BspANI GGCC 7 cut(s) 159, 174, 185, 231, 270, 513, 3320
BspCNI CTCAG 7 cut(s) 508, 1879, 2210, 2428, 2637, 3389, 3553
BspDI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BspFNI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BspMAI CTGCAG 1 cut(s) 2959
BspMI ACCTGC 3 cut(s) 1855, 3029, 3334
BspQI GCTCTTC 1 cut(s) 807
BspT104I TTCGAA 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 188, 312
BspTNI GGTCTC 1 cut(s) 1127
BsrDI GCAATG 5 cut(s) 1876, 2415, 2494, 2844, 2896
BsrFI RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
BsrI ACTGG 7 cut(s) 71, 217, 421, 1057, 1403, 2185, 3321
BssAI RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
BssECI CCNNGG 9 cut(s) 265, 453, 686, 873, 882, 939, 1630, 2066, 3268
BssHII GCGCGC 1 cut(s) 2002
BssNI GRCGYC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 1794
BssT1I CCWWGG 4 cut(s) 453, 873, 2066, 3268
Bst2BI CACGAG 1 cut(s) 1794
Bst2UI CCWGG 1 cut(s) 1761
Bst4CI ACNGT 6 cut(s) 140, 1046, 1067, 2260, 3469, 3532
Bst6I CTCTTC 3 cut(s) 807, 1500, 3252
BstACI GRCGYC 1 cut(s) 313
BstAPI GCANNNNNTGC 3 cut(s) 555, 3044, 3356
BstBAI YACGTR 1 cut(s) 2762
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 187, 2004, 3492
BstDEI CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 3331, 3376, 3561
BstDSI CCRYGG 6 cut(s) 265, 453, 686, 1630, 2066, 3268
BstFNI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BstH2I RGCGCY 3 cut(s) 316, 713, 2369
BstHHI GCGC 6 cut(s) 246, 315, 712, 2004, 2006, 2368
BstMAI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BstMWI GCNNNNNNNGC 8 cut(s) 252, 261, 418, 555, 1561, 3044, 3326, 3356
BstNI CCWGG 1 cut(s) 1761
BstNSI RCATGY 3 cut(s) 118, 3242, 3521
BstSCI CCNGG 4 cut(s) 315, 938, 1347, 1759
BstSFI CTRYAG 2 cut(s) 2955, 2976
BstSLI GKGCMC 2 cut(s) 1490, 3492
BstUI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BstV1I GCAGC 1 cut(s) 2511
BstV2I GAAGAC 3 cut(s) 121, 1092, 3440
BstX2I RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
BstYI RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
Bsu15I ATCGAT 4 cut(s) 342, 429, 1605, 1947
BsuRI GGCC 7 cut(s) 159, 174, 185, 231, 270, 513, 3320
BsuTUI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BtgI CCRYGG 6 cut(s) 265, 453, 686, 1630, 2066, 3268
BtrI CACGTC 1 cut(s) 238
BtsI GCAGTG 2 cut(s) 1291, 2952
BtsIMutI CAGTG 9 cut(s) 1051, 1063, 1235, 1291, 2192, 2433, 2741, 2785, 2952
BveI ACCTGC 3 cut(s) 1855, 3029, 3334
Cac8I GCNNGC 3 cut(s) 187, 2004, 3492
CaiI CAGNNNCTG 1 cut(s) 2771
CfoI GCGC 6 cut(s) 246, 315, 712, 2004, 2006, 2368
Cfr10I RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
Cfr13I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
ClaI ATCGAT 4 cut(s) 342, 429, 1605, 1947
CspAI ACCGGT 1 cut(s) 551
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
DdeI CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 3331, 3376, 3561
DinI GGCGCC 1 cut(s) 314
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 4 cut(s) 172, 183, 229, 3318
Eam1104I CTCTTC 3 cut(s) 807, 1500, 3252
EarI CTCTTC 3 cut(s) 807, 1500, 3252
Eco130I CCWWGG 4 cut(s) 453, 873, 2066, 3268
Eco24I GRGCYC 1 cut(s) 1878
Eco31I GGTCTC 1 cut(s) 1127
Eco32I GATATC 1 cut(s) 2671
Eco47I GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
Eco47III AGCGCT 1 cut(s) 711
Eco57I CTGAAG 7 cut(s) 636, 1174, 1259, 1797, 2529, 2765, 3452
Eco88I CYCGRG 3 cut(s) 119, 883, 3048
EcoO109I RGGNCCY 2 cut(s) 511, 2440
EcoRI GAATTC 1 cut(s) 3380
EcoRII CCWGG 1 cut(s) 1759
EcoRV GATATC 1 cut(s) 2671
EcoT14I CCWWGG 4 cut(s) 453, 873, 2066, 3268
EcoT22I ATGCAT 2 cut(s) 1281, 2080
EcoT38I GRGCYC 1 cut(s) 1878
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
ErhI CCWWGG 4 cut(s) 453, 873, 2066, 3268
FalI AAGNNNNNCTT 4 cut(s) 1239, 1271, 2871, 2903
FaqI GGGAC 4 cut(s) 55, 126, 272, 3230
FauI CCCGC 1 cut(s) 3499
FauNDI CATATG 1 cut(s) 916
FbaI TGATCA 1 cut(s) 2146
FblI GTMKAC 2 cut(s) 2961, 3120
Fnu4HI GCNGC 3 cut(s) 247, 2500, 2795
FriOI GRGCYC 1 cut(s) 1878
Fsp4HI GCNGC 3 cut(s) 247, 2500, 2795
FspBI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
GlaI GCGC 6 cut(s) 245, 314, 711, 2003, 2005, 2367
GluI GCNGC 3 cut(s) 247, 2500, 2795
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 2 cut(s) 2720, 2895
HaeII RGCGCY 3 cut(s) 316, 713, 2369
HaeIII GGCC 7 cut(s) 159, 174, 185, 231, 270, 513, 3320
HhaI GCGC 6 cut(s) 246, 315, 712, 2004, 2006, 2368
Hin1I GRCGYC 1 cut(s) 313
Hin6I GCGC 6 cut(s) 244, 313, 710, 2002, 2004, 2366
HinP1I GCGC 6 cut(s) 244, 313, 710, 2002, 2004, 2366
HincII GTYRAC 2 cut(s) 907, 3061
HindII GTYRAC 2 cut(s) 907, 3061
HindIII AAGCTT 1 cut(s) 1562
HphI GGTGA 6 cut(s) 97, 1094, 1583, 2357, 2999, 3010
Hpy166II GTNNAC 8 cut(s) 690, 772, 907, 1063, 2656, 2962, 3061, 3121
Hpy8I GTNNAC 8 cut(s) 690, 772, 907, 1063, 2656, 2962, 3061, 3121
Hpy99I CGWCG 4 cut(s) 140, 281, 779, 1659
HpyCH4III ACNGT 6 cut(s) 140, 1046, 1067, 2260, 3469, 3532
HpyCH4IV ACGT 8 cut(s) 126, 237, 774, 1657, 2017, 2533, 2761, 3401
HpyF10VI GCNNNNNNNGC 8 cut(s) 252, 261, 418, 555, 1561, 3044, 3326, 3356
HpyF3I CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 3331, 3376, 3561
HpySE526I ACGT 8 cut(s) 126, 237, 774, 1657, 2017, 2533, 2761, 3401
Hsp92I GRCGYC 1 cut(s) 313
HspAI GCGC 6 cut(s) 244, 313, 710, 2002, 2004, 2366
KasI GGCGCC 1 cut(s) 312
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 2146
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 5 cut(s) 366, 1075, 1354, 1958, 2419
Lsp1109I GCAGC 1 cut(s) 2511
LweI GCATC 7 cut(s) 1154, 1954, 2962, 3025, 3184, 3219, 3337
MaeI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
MaeII ACGT 8 cut(s) 126, 237, 774, 1657, 2017, 2533, 2761, 3401
MaeIII GTNAC 6 cut(s) 212, 238, 373, 1033, 2841, 2881
MfeI CAATTG 4 cut(s) 95, 1435, 1935, 3351
MflI RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
MhlI GDGCHC 4 cut(s) 1072, 1490, 1878, 3492
MlsI TGGCCA 1 cut(s) 3320
MluI ACGCGT 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 3320
Mly113I GGCGCC 1 cut(s) 313
MlyI GAGTC 6 cut(s) 85, 1786, 2218, 3032, 3101, 3122
MmeI TCCRAC 2 cut(s) 906, 2493
Mox20I TGGCCA 1 cut(s) 3320
Mph1103I ATGCAT 2 cut(s) 1281, 2080
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 3 cut(s) 324, 2487, 2853
MscI TGGCCA 1 cut(s) 3320
MslI CAYNNNNRTG 3 cut(s) 1814, 2649, 3018
Msp20I TGGCCA 1 cut(s) 3320
MspA1I CMGCKG 1 cut(s) 3494
MspR9I CCNGG 4 cut(s) 317, 940, 1349, 1761
MunI CAATTG 4 cut(s) 95, 1435, 1935, 3351
Mva1269I GAATGC 3 cut(s) 1279, 2487, 2853
MvaI CCWGG 1 cut(s) 1761
MvnI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
MwoI GCNNNNNNNGC 8 cut(s) 252, 261, 418, 555, 1561, 3044, 3326, 3356
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 313
NciI CCSGG 3 cut(s) 317, 940, 1349
NcoI CCATGG 3 cut(s) 453, 2066, 3268
NdeI CATATG 1 cut(s) 916
NgoMIV GCCGGC 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 238, 2841
NsiI ATGCAT 2 cut(s) 1281, 2080
NspI RCATGY 3 cut(s) 118, 3242, 3521
NspV TTCGAA 1 cut(s) 572
PaeR7I CTCGAG 1 cut(s) 3048
PaqCI CACCTGC 1 cut(s) 3029
PauI GCGCGC 1 cut(s) 2002
PciI ACATGT 1 cut(s) 3517
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 273
PctI GAATGC 3 cut(s) 1279, 2487, 2853
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 3 cut(s) 324, 2487, 2853
PfeI GAWTC 8 cut(s) 55, 785, 848, 1428, 1479, 1541, 1858, 3066
PflMI CCANNNNNTGG 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 1759
PinAI ACCGGT 1 cut(s) 551
PkrI GCNGC 3 cut(s) 248, 2501, 2796
PleI GAGTC 6 cut(s) 85, 1786, 2217, 3031, 3101, 3122
PluTI GGCGCC 1 cut(s) 316
PpsI GAGTC 6 cut(s) 85, 1786, 2217, 3031, 3101, 3122
Ppu21I YACGTR 1 cut(s) 2762
PpuMI RGGWCCY 1 cut(s) 2440
PscI ACATGT 1 cut(s) 3517
PsiI TTATAA 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 2440
Psp6I CCWGG 1 cut(s) 1759
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 1 cut(s) 1759
PspPI GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
PspPPI RGGWCCY 1 cut(s) 2440
PstI CTGCAG 1 cut(s) 2959
PstNI CAGNNNCTG 1 cut(s) 2771
PsuI RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
PteI GCGCGC 1 cut(s) 2002
RseI CAYNNNNRTG 3 cut(s) 1814, 2649, 3018
SapI GCTCTTC 1 cut(s) 807
SatI GCNGC 3 cut(s) 247, 2500, 2795
Sau96I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 6 cut(s) 85, 1786, 2218, 3032, 3101, 3122
ScrFI CCNGG 4 cut(s) 317, 940, 1349, 1761
SduI GDGCHC 4 cut(s) 1072, 1490, 1878, 3492
SfaNI GCATC 7 cut(s) 1154, 1954, 2962, 3025, 3184, 3219, 3337
SfcI CTRYAG 2 cut(s) 2955, 2976
SfoI GGCGCC 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 3048
SfuI TTCGAA 1 cut(s) 572
SinI GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
SlaI CTCGAG 1 cut(s) 3048
SmiMI CAYNNNNRTG 3 cut(s) 1814, 2649, 3018
SmlI CTYRAG 2 cut(s) 2111, 3048
SmoI CTYRAG 2 cut(s) 2111, 3048
SspDI GGCGCC 1 cut(s) 312
SspI AATATT 1 cut(s) 2587
SspMI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
StyD4I CCNGG 4 cut(s) 315, 938, 1347, 1759
StyI CCWWGG 4 cut(s) 453, 873, 2066, 3268
TaaI ACNGT 6 cut(s) 140, 1046, 1067, 2260, 3469, 3532
TaiI ACGT 8 cut(s) 129, 240, 777, 1660, 2020, 2536, 2764, 3404
TaqII GACCGA 1 cut(s) 3452
TatI WGTACW 2 cut(s) 348, 756
TauI GCSGC 2 cut(s) 249, 2797
TfiI GAWTC 8 cut(s) 55, 785, 848, 1428, 1479, 1541, 1858, 3066
TscAI CASTG 9 cut(s) 1051, 1070, 1242, 1298, 2192, 2440, 2748, 2785, 2959
TseFI GTSAC 2 cut(s) 238, 2841
TseI GCWGC 1 cut(s) 2499
Tsp45I GTSAC 2 cut(s) 238, 2841
TspGWI ACGGA 2 cut(s) 675, 2216
TspRI CASTG 9 cut(s) 1051, 1070, 1242, 1298, 2192, 2440, 2748, 2785, 2959
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
XapI RAATTY 5 cut(s) 574, 727, 862, 1765, 3380
XbaI TCTAGA 2 cut(s) 2284, 3094
XceI RCATGY 3 cut(s) 118, 3242, 3521
XhoI CTCGAG 1 cut(s) 3048
XmiI GTMKAC 2 cut(s) 2961, 3120
XmnI GAANNNNTTC 3 cut(s) 324, 2487, 2853
XspI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
ZrmI AGTACT 1 cut(s) 758
Zsp2I ATGCAT 2 cut(s) 1281, 2080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.