Rroxscaffold_5G00352680

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
29820212 .. 29844138
23927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352680.1

Sequence Viewer

Length: 4134 bp
ATGAGCAGAAATGCAGAATGTTACACTAATCTATTTCACACCGAGAATGATAGATCTACGGATGGCGAAGCACTTGGTAGTGGCGAGAAGACAGAGAGTATGAGACTTTTGAAAGAACTTATCGAGGAAGGGCAACATGATTCGATGTTGTTAACGTGGGGCATATCATCCATGTGGTTGGAAGGAGGGCTTCACCTTCATGTTTGTGGAGTGGATGCGTTAGCCAAAACGGCGGTCATAAACGAATATATAACGAACTCGACAAGAGGAGAAGATTCTCGACTACTGGTCCCAAATCAAAGCCTTCGAGACTCAATTGTCTCTCACCGACCACATGCCCGAGTACGTCTTCTACGACGGCCCCCCTTCGCCACCGGCCTCCCTCACTACGGCCACATACTGGCCGGCACCATCAAGGACATCATCACGCGCTACCAGTCCATGACCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTTCCCGTCGAGAACGAGATTGATAAGAAGCTCAACATCAGGCGCCGGGAACAGGTTCTCGAAATGGGGATCGATAAGTACAACGAGGAGTGCCGGAGCATTGTTACTCGGTTTGTGGAGGAATGGGAGAAGGTGATTACGCGAACTGGGAGGTGGATCGATTTTCGGAACGATTATAAGACCATGGACTTGAAGTTTATGGAGAGTGTGTGGTGGGTTTTTGCTCAGATATATGATAAGGGCCTTGTCTATAAGGGCTTCAAGGTCATGCCGTACAGCACCGGTTGCAAGACACCGCTTTCGAATTTCGAGGCTAATCAAGATTACAAGGATATTCCTGATCCAGAAGTTATGGTGGCTTTTCCAATTATTGGTGATTCTGACGAGGCAAGTTTTGTGGCTTGGACAACTACTCCATGGACCCTTCCTAGCCATTTAGCGCTTTGTGTCAATGCAAATTTTACCTATTTGAAGGTTCGCAACAAGTACTCAAAAAAAGTTTACGTCGTTGCTGAATCTCGATTGTCAGCTCTTCCTAATGACAAACCAAAAGAAAACGTACCAAATGGATCTGTTGATTCAAAAAAATTAAATTCAAAGAGCAAGGGATCCTCGGGTGGGAAAAAGGAAGCAGTTGACACATCATATGAAGTGTTGGAGAAAATGTCCGGGGCTTCATTAGTGGGGAAGAAGTATGAACCACCATTTGACTACTTTAAGGAGTTCTCTGATGTTGCATTTAGAGTTGTTGCGGACAACTATGTTACTGATGACAGTGGTACTGGAATTGTCCACTGTGCTCCTGCATTTGGTGAAGACGATTATCGCGTTTGCCTTGAAAATAAAGTTATCAGTAAGGGACTCTTCTTACCACTGTCTATAGATTGTGGGATTTATGATCTTGCACGAACTGGAGAGACCTTGATTGTAGCAGTTGATGAGGATGGATGCTTTACTGAAAAAATTACCGACTTCAGCAAGTGCTATGTAAAAAATGCAGATAAAGATATTATTGAAGCACTGAAGCGGAAAGGAAGGCTTGTTAAGTCTGGGACCATTATGCATTCTTATCCCCATTGCCCAAGATCTAAAACTCCACTTATTCAAAGAGCTGTTCCAAGTTGGTTTATCCGGGTGGAGCAGTTGAAAGAAAAATTGTTAGAAAACAACAAGCAGACATATTGGGTTCCTGATTTTGTGAAGGAAAAACGATTCCACAATTGGCTGGAAAATGCAAGAGATTGGGCAGTTAGTCGAAGTAGATTCTGGGGCACTCCTCTTCCTGTGTGGATTAGTGAGGATGGGGAGGAAATAGTAGTTATGGATTCCATTGAGAAGCTCGAAAAGCTTTCTGGTGTTAAGGTTTTTGATCTTCACCGGCACAATATCGATCATATCACTATTCCATCTAGCCGTGGTCCTCAATTTGGCGTTCTTCGACGTATTGATGATGTGTTTGATTGCTGGTTTGAGAGTGGTTCCATGCCTTATGCTTATATCCACTATCCTTTTGAGAATGTTGAACTTTTTGAGAAAAACTTTCCTGGAAATTTTGTGGCTGAAGGGCTGGATCAGACTCGTGGATGGTTCTACACTCTTATGGTGTTATCTACCGCATTATTTGGGAAACCTGCTTTTAAGAATCTCATTTGCAATGGACTCGTACTTGCTGAGGATGGAAAAAAAATGAGTAAAAGTCTGAAAAATTATCCTCCACCAATTGAAGTTATCGATCAGTATGGAGCTGATGCAGTACGATTATACCTAATTAACTCTCCTGTTGTGCGCGCGGAACCATTACGTTTCAAGAAGGAAGGAGTTTATGGTGTCGTCAAGGATGTATTTCTTCCATGGTACAATGCATATAGGTTCCTTGTCCAGAATGCAAAGAGACTTGAGATTGAAGGGTTTGCCCCTTTTGTTCCTATTGATCAAGCCACTCTACAAAAGTCATCTAATGTGCTTGACCAGTGGATCTACTCAGCCACACAGAGTCTTGTGTATTTTGTCCGTCAGGAGATGAACGGTTATCGACTTTATACGGTGGTTCCATATCTTTTGAAGTTTCTAGACAATTTGACAAATATCTATGTGAGGTGCAATCGCAAGAGGTTGAAGGGTCGTACAGGTGAAGAAGATTGTAGGGTGGCGCTCTCAACACTTTACAATGTCCTTTTGGTATCATGTAAAGCGATGGCTCCATTAACACCATTTTTCACTGAGGTCCTTTTTCAAAATATGCGAAAAGTTTCCAACACGGCAGAGGAAAGCATTCATCATTGCAGCTTTCCTGAAGCAGAAGGCAAGAGGGATGAACGTATTGAGCAAAGTGTTGCAAGGATGATGACAATAATTGATCTTGCCCGTAATATTCGTGAGAGACGTAACAAACCTCTTAAAACACCACTCAGGGAGATGGTTATCGTTCATCCTGATGTGGACTTTCTTGATGATATCGCTGGAAGGCTAAAAGAGCTCAATGGTGAAACTATGTGGTTTTATAGTCAAATGGTCATTAGATGGGGTGGAATGGGGAAAGATCTTTTTGGGAAGAGTGATTCCCAGTTTCCTCATTTATACTGTTGTATCCTTTATCATTGGACTATTGGTTTAGAAGAAACCTTATTCTCAAAGTTTATCCATTCATTAAATTACTCTGTTCTGAATAGATCATCAAGGTATGTGCTGGAGGAACTTAATGTGAGATCTCTTGTTCCATGTAATGATACACTGAAGTATGCTTCATTACGTGCTGAGCCTGATTTCAGGTATGGATATTTTTGGGGTGGGGAAGGGGTATCACCTTCATTTTATTGTGGAATTTATCCCGACTTTATGTTTGATGACATTGTTGGTTTGTTTTCTTATAGCGTTTTGGGTAAGCGGCTAGGAAAACATATGGGAATTGTTGCCAAAGAAGTCAAGGCAATGTCGCAGGAAAGCATTCTAGCATTTGAGAAATCCGGAGAAGTTACTCTTTCTGGTCATTGCTTAAAGCTGACTGATATTAAGGTTGTTAGGGATTTCAAGTGTCCTGATGGCACTGCAGTAGATGACGTGGATGCTACAGGAGATGGTGATGTTTTGGTGATTTTGGATTTACGTTCCGATGAGTCGTTGGCTGATGCAGGTGTTGCTCGAGAGATTGTCAACAGAATCCAGAAGTTAAGAAAGAAATCTGCTCTAGAACCTACTGACTCGGTGGAGGTCTACTTTGACTCTTTGGATGAAGATAAAGCAGATTCCCAAAGGATCTTGCAATCACAGGAACAATACATTAGGGATGCCATTGGTTCGCCATTGCTTCCTTCAAGTGTAATGCCATCACATGCTGTCCCGGTTGGGGAAGAGAGTTTCCATGGGATTTCTGGCATTTCATTTGCTATCAAACTGGCCAGACCTGCCTTGGTTTTCAACTTGGATGCAATTGTTGCTTTATATTCAGCAGGAAACTCAGAATTCGCAAGGTTTCTGCAAACGTACTTGTTGTCAAGGGATCATGCAAATCTGAAGACCGAGTTTCAACATGGAAACGGGAAGATAACTGTTGATTGCATTGAAAATGTGCCCGCTGTGAGTTTGGTGTTGAGGAAACATGTGTATTTGACTATTGGGGAGTTCTTTTGTAGTACAAACTCTGAGTAG

Protein Analysis

1377

Amino Acids

156.77

Weight (kDa)

6.36

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 117 - 761 1.7e-148 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 819 - 968 4.7e-26 Anticodon-binding domain of tRNA ligase
DUF5915 PF19302 1119 - 1257 2.6e-18 Domain of unknown function (DUF5915)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AarI CACCTGC 1 cut(s) 3608
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 3 cut(s) 2128, 3608, 3898
AccB1I GGYRCC 2 cut(s) 407, 531
AccB7I CCANNNNNTGG 2 cut(s) 400, 860
AccI GTMKAC 1 cut(s) 3699
AccII CGCG 6 cut(s) 430, 463, 631, 1317, 2277, 2279
AccIII TCCGGA 1 cut(s) 3452
AciI CCGC 9 cut(s) 233, 466, 785, 1241, 1516, 2103, 2279, 3373, 4059
AcoI YGGCCR 4 cut(s) 391, 402, 448, 3882
AcsI RAATTY 6 cut(s) 793, 946, 1081, 2038, 3309, 3947
AcuI CTGAAG 6 cut(s) 1447, 1532, 2070, 2802, 3242, 4019
AcyI GRCGYC 1 cut(s) 532
AfeI AGCGCT 1 cut(s) 930
AfiI CCNNNNNNNGG 8 cut(s) 389, 400, 541, 860, 1107, 1298, 1916, 3832
AflIII ACRYGT 1 cut(s) 4084
AgeI ACCGGT 1 cut(s) 770
AhdI GACNNNNNGTC 1 cut(s) 287
AjiI CACGTC 2 cut(s) 457, 3547
AjnI CCWGG 1 cut(s) 2032
AluBI AGCT 9 cut(s) 520, 1019, 1601, 1828, 1837, 2234, 2775, 2965, 3487
AluI AGCT 9 cut(s) 520, 1019, 1601, 1828, 1837, 2234, 2775, 2965, 3487
Alw21I GWGCWC 2 cut(s) 1291, 2967
Alw26I GTCTC 6 cut(s) 97, 303, 325, 1400, 2374, 2863
Ama87I CYCGRG 3 cut(s) 339, 1102, 3627
Aor13HI TCCGGA 1 cut(s) 3452
Aor51HI AGCGCT 1 cut(s) 930
AoxI GGCC 8 cut(s) 359, 376, 391, 402, 448, 487, 730, 3882
ApeKI GCWGC 1 cut(s) 2772
ApoI RAATTY 6 cut(s) 793, 946, 1081, 2038, 3309, 3947
ArsI GACNNNNNNTTYG 6 cut(s) 219, 251, 772, 804, 3311, 3343
AsiGI ACCGGT 1 cut(s) 770
Asp700I GAANNNNTTC 4 cut(s) 543, 2737, 2760, 3432
AspLEI GCGC 7 cut(s) 432, 465, 534, 931, 2277, 2279, 2641
AspS9I GGNCC 7 cut(s) 289, 360, 730, 909, 1542, 1907, 2713
AsuC2I CCSGG 4 cut(s) 536, 1159, 1622, 3827
AsuII TTCGAA 1 cut(s) 791
AvaI CYCGRG 3 cut(s) 339, 1102, 3627
AvaII GGWCC 5 cut(s) 289, 909, 1542, 1907, 2713
BaeGI GKGCMC 2 cut(s) 1763, 4059
BaeI ACNNNNGTAYC 2 cut(s) 3058, 3091
BalI TGGCCA 1 cut(s) 3884
BamHI GGATCC 1 cut(s) 1097
BanI GGYRCC 2 cut(s) 407, 531
BanII GRGCYC 1 cut(s) 2967
BauI CACGAG 1 cut(s) 2067
BbsI GAAGAC 4 cut(s) 95, 341, 1311, 4007
Bbv12I GWGCWC 2 cut(s) 1291, 2967
BbvCI CCTCAGC 1 cut(s) 2160
BbvI GCAGC 1 cut(s) 2784
BceAI ACGGC 7 cut(s) 246, 374, 406, 502, 745, 1887, 2763
BcgI CGANNNNNNTGC 2 cut(s) 2131, 2165
BciT130I CCWGG 1 cut(s) 2034
BciVI GTATCC 1 cut(s) 3086
BclI TGATCA 1 cut(s) 2419
BcnI CCSGG 4 cut(s) 536, 1159, 1622, 3827
BcoDI GTCTC 6 cut(s) 97, 303, 325, 1400, 2374, 2863
BfaI CTAG 6 cut(s) 918, 1899, 2558, 3377, 3437, 3674
BfmI CTRYAG 3 cut(s) 1368, 3534, 3555
BfoI RGCGCY 3 cut(s) 535, 932, 2642
BfuAI ACCTGC 3 cut(s) 2128, 3608, 3898
BfuI GTATCC 1 cut(s) 3086
BglI GCCNNNNNGGC 2 cut(s) 230, 471
BglII AGATCT 4 cut(s) 53, 1574, 3028, 3194
BisI GCNGC 3 cut(s) 466, 2773, 3374
BlpI GCTNAGC 1 cut(s) 3243
BlsI GCNGC 3 cut(s) 467, 2774, 3375
BmcAI AGTACT 1 cut(s) 977
Bme1390I CCNGG 5 cut(s) 536, 1159, 1622, 2034, 3827
Bme18I GGWCC 5 cut(s) 289, 909, 1542, 1907, 2713
BmeRI GACNNNNNGTC 1 cut(s) 287
BmeT110I CYCGRG 3 cut(s) 339, 1102, 3627
BmgBI CACGTC 2 cut(s) 457, 3547
BmgT120I GGNCC 7 cut(s) 289, 360, 730, 909, 1542, 1907, 2713
BmrFI CCNGG 5 cut(s) 536, 1159, 1622, 2034, 3827
BmrI ACTGGG 2 cut(s) 645, 3046
BmsI GCATC 7 cut(s) 205, 1427, 2227, 3541, 3604, 3763, 3901
BmuI ACTGGG 2 cut(s) 645, 3046
BpiI GAAGAC 4 cut(s) 95, 341, 1311, 4007
BpmI CTGGAG 2 cut(s) 1422, 3197
Bpu10I CCTNAGC 1 cut(s) 2160
Bpu1102I GCTNAGC 1 cut(s) 3243
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 2405
BpuMI CCSGG 4 cut(s) 536, 1159, 1622, 3827
Bsa29I ATCGAT 4 cut(s) 561, 648, 1878, 2220
BsaAI YACGTR 1 cut(s) 3239
BsaBI GATNNNNATC 1 cut(s) 2909
BsaHI GRCGYC 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 1400
BsaJI CCNNGG 9 cut(s) 484, 672, 905, 1101, 1158, 1903, 2339, 3847, 3894
BsaWI WCCGGW 2 cut(s) 770, 3452
BsaXI ACNNNNNCTCC 6 cut(s) 683, 713, 886, 916, 1139, 1169
Bsc4I CCNNNNNNNGG 8 cut(s) 389, 400, 541, 860, 1107, 1298, 1916, 3832
Bse118I RCCGGY 5 cut(s) 374, 404, 446, 770, 1866
Bse1I ACTGG 9 cut(s) 291, 405, 436, 640, 1276, 1405, 2458, 3052, 3885
Bse3DI GCAATG 6 cut(s) 1564, 2149, 2767, 3423, 3475, 3788
Bse8I GATNNNNATC 1 cut(s) 2909
BseAI TCCGGA 1 cut(s) 3452
BseBI CCWGG 1 cut(s) 2034
BseCI ATCGAT 4 cut(s) 561, 648, 1878, 2220
BseDI CCNNGG 9 cut(s) 484, 672, 905, 1101, 1158, 1903, 2339, 3847, 3894
BseJI GATNNNNATC 1 cut(s) 2909
BseLI CCNNNNNNNGG 8 cut(s) 389, 400, 541, 860, 1107, 1298, 1916, 3832
BseMI GCAATG 6 cut(s) 1564, 2149, 2767, 3423, 3475, 3788
BseMII CTCAG 8 cut(s) 728, 2151, 2484, 2700, 2911, 3234, 3957, 4119
BseNI ACTGG 9 cut(s) 291, 405, 436, 640, 1276, 1405, 2458, 3052, 3885
BsePI GCGCGC 1 cut(s) 2275
BseRI GAGGAG 3 cut(s) 282, 590, 1755
BseSI GKGCMC 2 cut(s) 1763, 4059
BseXI GCAGC 1 cut(s) 2784
BseYI CCCAGC 1 cut(s) 474
Bsh1236I CGCG 6 cut(s) 430, 463, 631, 1317, 2277, 2279
BshFI GGCC 8 cut(s) 361, 378, 393, 404, 450, 489, 732, 3884
BshNI GGYRCC 2 cut(s) 407, 531
BshTI ACCGGT 1 cut(s) 770
BshVI ATCGAT 4 cut(s) 561, 648, 1878, 2220
BsiHKAI GWGCWC 2 cut(s) 1291, 2967
BsiHKCI CYCGRG 3 cut(s) 339, 1102, 3627
BslFI GGGAC 5 cut(s) 275, 491, 1362, 1555, 3809
BslI CCNNNNNNNGG 8 cut(s) 389, 400, 541, 860, 1107, 1298, 1916, 3832
BsmAI GTCTC 6 cut(s) 97, 303, 325, 1400, 2374, 2863
BsmBI CGTCTC 1 cut(s) 2863
BsmFI GGGAC 5 cut(s) 275, 491, 1362, 1555, 3809
BsmI GAATGC 4 cut(s) 1552, 2377, 2760, 3432
BsnI GGCC 8 cut(s) 361, 378, 393, 404, 450, 489, 732, 3884
Bso31I GGTCTC 1 cut(s) 1400
BsoBI CYCGRG 3 cut(s) 339, 1102, 3627
Bsp119I TTCGAA 1 cut(s) 791
Bsp1286I GDGCHC 4 cut(s) 1291, 1763, 2967, 4059
Bsp13I TCCGGA 1 cut(s) 3452
Bsp1720I GCTNAGC 1 cut(s) 3243
Bsp19I CCATGG 4 cut(s) 672, 905, 2339, 3847
BspACI CCGC 9 cut(s) 233, 466, 785, 1241, 1516, 2103, 2279, 3373, 4059
BspANI GGCC 8 cut(s) 361, 378, 393, 404, 450, 489, 732, 3884
BspCNI CTCAG 8 cut(s) 727, 2152, 2483, 2701, 2910, 3235, 3956, 4120
BspDI ATCGAT 4 cut(s) 561, 648, 1878, 2220
BspEI TCCGGA 1 cut(s) 3452
BspFNI CGCG 6 cut(s) 430, 463, 631, 1317, 2277, 2279
BspMAI CTGCAG 1 cut(s) 3538
BspMI ACCTGC 3 cut(s) 2128, 3608, 3898
BspQI GCTCTTC 1 cut(s) 1026
BspT104I TTCGAA 1 cut(s) 791
BspT107I GGYRCC 2 cut(s) 407, 531
BspTNI GGTCTC 1 cut(s) 1400
BsrDI GCAATG 6 cut(s) 1564, 2149, 2767, 3423, 3475, 3788
BsrFI RCCGGY 5 cut(s) 374, 404, 446, 770, 1866
BsrI ACTGG 9 cut(s) 291, 405, 436, 640, 1276, 1405, 2458, 3052, 3885
BssAI RCCGGY 5 cut(s) 374, 404, 446, 770, 1866
BssECI CCNNGG 9 cut(s) 484, 672, 905, 1101, 1158, 1903, 2339, 3847, 3894
BssHII GCGCGC 1 cut(s) 2275
BssNI GRCGYC 1 cut(s) 532
BssSI CACGAG 1 cut(s) 2067
BssT1I CCWWGG 5 cut(s) 672, 905, 2339, 3847, 3894
Bst2BI CACGAG 1 cut(s) 2067
Bst2UI CCWGG 1 cut(s) 2034
Bst4CI ACNGT 7 cut(s) 1265, 1286, 1365, 2516, 2533, 3071, 4036
Bst6I CTCTTC 5 cut(s) 1026, 1358, 1773, 3035, 3831
BstACI GRCGYC 1 cut(s) 532
BstAPI GCANNNNNTGC 3 cut(s) 774, 3623, 3920
BstBAI YACGTR 1 cut(s) 3239
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 3 cut(s) 406, 2277, 4059
BstDEI CTNAG 8 cut(s) 714, 2160, 2470, 2709, 2897, 3243, 3943, 4128
BstDSI CCRYGG 6 cut(s) 484, 672, 905, 1903, 2339, 3847
BstFNI CGCG 6 cut(s) 430, 463, 631, 1317, 2277, 2279
BstH2I RGCGCY 3 cut(s) 535, 932, 2642
BstHHI GCGC 7 cut(s) 432, 465, 534, 931, 2277, 2279, 2641
BstMAI GTCTC 6 cut(s) 97, 303, 325, 1400, 2374, 2863
BstMWI GCNNNNNNNGC 9 cut(s) 230, 471, 480, 774, 1834, 2962, 3623, 3890, 3920
BstNI CCWGG 1 cut(s) 2034
BstNSI RCATGY 3 cut(s) 338, 3821, 4088
BstSCI CCNGG 5 cut(s) 534, 1157, 1620, 2032, 3825
BstSFI CTRYAG 3 cut(s) 1368, 3534, 3555
BstSLI GKGCMC 2 cut(s) 1763, 4059
BstUI CGCG 6 cut(s) 430, 463, 631, 1317, 2277, 2279
BstV1I GCAGC 1 cut(s) 2784
BstV2I GAAGAC 4 cut(s) 95, 341, 1311, 4007
BstX2I RGATCY 8 cut(s) 53, 1058, 1097, 1574, 2463, 3028, 3194, 3741
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 8 cut(s) 53, 1058, 1097, 1574, 2463, 3028, 3194, 3741
Bsu15I ATCGAT 4 cut(s) 561, 648, 1878, 2220
BsuI GTATCC 1 cut(s) 3086
BsuRI GGCC 8 cut(s) 361, 378, 393, 404, 450, 489, 732, 3884
BsuTUI ATCGAT 4 cut(s) 561, 648, 1878, 2220
BtgI CCRYGG 6 cut(s) 484, 672, 905, 1903, 2339, 3847
BtgZI GCGATG 1 cut(s) 2696
BtrI CACGTC 2 cut(s) 457, 3547
BtsI GCAGTG 1 cut(s) 3531
BtsIMutI CAGTG 8 cut(s) 1270, 1282, 1361, 1508, 2465, 2706, 3218, 3531
BveI ACCTGC 3 cut(s) 2128, 3608, 3898
Cac8I GCNNGC 3 cut(s) 406, 2277, 4059
CfoI GCGC 7 cut(s) 432, 465, 534, 931, 2277, 2279, 2641
Cfr10I RCCGGY 5 cut(s) 374, 404, 446, 770, 1866
Cfr13I GGNCC 7 cut(s) 289, 360, 730, 909, 1542, 1907, 2713
ClaI ATCGAT 4 cut(s) 561, 648, 1878, 2220
CspAI ACCGGT 1 cut(s) 770
CspCI CAANNNNNGTGG 2 cut(s) 867, 902
DdeI CTNAG 8 cut(s) 714, 2160, 2470, 2709, 2897, 3243, 3943, 4128
DinI GGCGCC 1 cut(s) 533
DrdI GACNNNNNNGTC 1 cut(s) 317
DriI GACNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 4 cut(s) 391, 402, 448, 3882
Eam1104I CTCTTC 5 cut(s) 1026, 1358, 1773, 3035, 3831
Eam1105I GACNNNNNGTC 1 cut(s) 287
EarI CTCTTC 5 cut(s) 1026, 1358, 1773, 3035, 3831
Ecl136II GAGCTC 1 cut(s) 2965
Eco130I CCWWGG 5 cut(s) 672, 905, 2339, 3847, 3894
Eco24I GRGCYC 1 cut(s) 2967
Eco31I GGTCTC 1 cut(s) 1400
Eco32I GATATC 1 cut(s) 2944
Eco47I GGWCC 5 cut(s) 289, 909, 1542, 1907, 2713
Eco47III AGCGCT 1 cut(s) 930
Eco53kI GAGCTC 1 cut(s) 2965
Eco57I CTGAAG 6 cut(s) 1447, 1532, 2070, 2802, 3242, 4019
Eco88I CYCGRG 3 cut(s) 339, 1102, 3627
EcoICRI GAGCTC 1 cut(s) 2965
EcoO109I RGGNCCY 2 cut(s) 730, 2713
EcoRI GAATTC 1 cut(s) 3947
EcoRII CCWGG 1 cut(s) 2032
EcoRV GATATC 1 cut(s) 2944
EcoT14I CCWWGG 5 cut(s) 672, 905, 2339, 3847, 3894
EcoT22I ATGCAT 2 cut(s) 1554, 2353
EcoT38I GRGCYC 1 cut(s) 2967
EgeI GGCGCC 1 cut(s) 533
EheI GGCGCC 1 cut(s) 533
ErhI CCWWGG 5 cut(s) 672, 905, 2339, 3847, 3894
Esp3I CGTCTC 1 cut(s) 2863
FalI AAGNNNNNCTT 8 cut(s) 174, 206, 1337, 1369, 1512, 1544, 3450, 3482
FaqI GGGAC 5 cut(s) 275, 491, 1362, 1555, 3809
FauI CCCGC 1 cut(s) 4066
FauNDI CATATG 2 cut(s) 1135, 3387
FbaI TGATCA 1 cut(s) 2419
FblI GTMKAC 1 cut(s) 3699
Fnu4HI GCNGC 3 cut(s) 466, 2773, 3374
FriOI GRGCYC 1 cut(s) 2967
Fsp4HI GCNGC 3 cut(s) 466, 2773, 3374
FspBI CTAG 6 cut(s) 918, 1899, 2558, 3377, 3437, 3674
GlaI GCGC 7 cut(s) 431, 464, 533, 930, 2276, 2278, 2640
GluI GCNGC 3 cut(s) 466, 2773, 3374
GsaI CCCAGC 1 cut(s) 478
GsuI CTGGAG 2 cut(s) 1422, 3197
HaeII RGCGCY 3 cut(s) 535, 932, 2642
HaeIII GGCC 8 cut(s) 361, 378, 393, 404, 450, 489, 732, 3884
HhaI GCGC 7 cut(s) 432, 465, 534, 931, 2277, 2279, 2641
Hin1I GRCGYC 1 cut(s) 532
Hin6I GCGC 7 cut(s) 430, 463, 532, 929, 2275, 2277, 2639
HinP1I GCGC 7 cut(s) 430, 463, 532, 929, 2275, 2277, 2639
HincII GTYRAC 3 cut(s) 153, 1126, 3640
HindII GTYRAC 3 cut(s) 153, 1126, 3640
HindIII AAGCTT 1 cut(s) 1835
HpaI GTTAAC 1 cut(s) 153
Hpy166II GTNNAC 7 cut(s) 153, 991, 1126, 1282, 2929, 3640, 3700
Hpy8I GTNNAC 7 cut(s) 153, 991, 1126, 1282, 2929, 3640, 3700
Hpy99I CGWCG 4 cut(s) 360, 500, 998, 1932
HpyCH4III ACNGT 7 cut(s) 1265, 1286, 1365, 2516, 2533, 3071, 4036
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 471, 480, 774, 1834, 2962, 3623, 3890, 3920
HpyF3I CTNAG 8 cut(s) 714, 2160, 2470, 2709, 2897, 3243, 3943, 4128
Hsp92I GRCGYC 1 cut(s) 532
HspAI GCGC 7 cut(s) 430, 463, 532, 929, 2275, 2277, 2639
KasI GGCGCC 1 cut(s) 531
Kpn2I TCCGGA 1 cut(s) 3452
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 2419
KspAI GTTAAC 1 cut(s) 153
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 5 cut(s) 585, 1294, 1627, 2231, 2692
Lsp1109I GCAGC 1 cut(s) 2784
LweI GCATC 7 cut(s) 205, 1427, 2227, 3541, 3604, 3763, 3901
MaeI CTAG 6 cut(s) 918, 1899, 2558, 3377, 3437, 3674
MaeIII GTNAC 6 cut(s) 20, 457, 592, 1252, 2873, 3460
MfeI CAATTG 4 cut(s) 315, 1708, 2208, 3915
MflI RGATCY 8 cut(s) 53, 1058, 1097, 1574, 2463, 3028, 3194, 3741
MhlI GDGCHC 4 cut(s) 1291, 1763, 2967, 4059
MlsI TGGCCA 1 cut(s) 3884
MluNI TGGCCA 1 cut(s) 3884
Mly113I GGCGCC 1 cut(s) 532
MlyI GAGTC 8 cut(s) 305, 1344, 2059, 2142, 2491, 3611, 3680, 3701
MmeI TCCRAC 3 cut(s) 159, 1125, 2766
Mox20I TGGCCA 1 cut(s) 3884
Mph1103I ATGCAT 2 cut(s) 1554, 2353
MroI TCCGGA 1 cut(s) 3452
MroNI GCCGGC 1 cut(s) 404
MroXI GAANNNNTTC 4 cut(s) 543, 2737, 2760, 3432
MscI TGGCCA 1 cut(s) 3884
MslI CAYNNNNRTG 5 cut(s) 172, 198, 204, 2087, 2922
Msp20I TGGCCA 1 cut(s) 3884
MspA1I CMGCKG 1 cut(s) 4061
MspR9I CCNGG 5 cut(s) 536, 1159, 1622, 2034, 3827
MunI CAATTG 4 cut(s) 315, 1708, 2208, 3915
Mva1269I GAATGC 4 cut(s) 1552, 2377, 2760, 3432
MvaI CCWGG 1 cut(s) 2034
MvnI CGCG 6 cut(s) 430, 463, 631, 1317, 2277, 2279
MwoI GCNNNNNNNGC 9 cut(s) 230, 471, 480, 774, 1834, 2962, 3623, 3890, 3920
NaeI GCCGGC 1 cut(s) 406
NarI GGCGCC 1 cut(s) 532
NciI CCSGG 4 cut(s) 536, 1159, 1622, 3827
NcoI CCATGG 4 cut(s) 672, 905, 2339, 3847
NdeI CATATG 2 cut(s) 1135, 3387
NgoMIV GCCGGC 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 457
NsiI ATGCAT 2 cut(s) 1554, 2353
NspI RCATGY 3 cut(s) 338, 3821, 4088
NspV TTCGAA 1 cut(s) 791
PaeR7I CTCGAG 1 cut(s) 3627
PaqCI CACCTGC 1 cut(s) 3608
PauI GCGCGC 1 cut(s) 2275
PciI ACATGT 1 cut(s) 4084
PciSI GCTCTTC 1 cut(s) 1026
PcsI WCGNNNNNNNCGW 4 cut(s) 352, 492, 1314, 2869
PctI GAATGC 4 cut(s) 1552, 2377, 2760, 3432
PdiI GCCGGC 1 cut(s) 406
PdmI GAANNNNTTC 4 cut(s) 543, 2737, 2760, 3432
PflMI CCANNNNNTGG 2 cut(s) 400, 860
PfoI TCCNGGA 1 cut(s) 2032
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 3 cut(s) 467, 2774, 3375
PleI GAGTC 8 cut(s) 305, 1344, 2059, 2142, 2490, 3610, 3680, 3701
PluTI GGCGCC 1 cut(s) 535
PpsI GAGTC 8 cut(s) 305, 1344, 2059, 2142, 2490, 3610, 3680, 3701
Ppu21I YACGTR 1 cut(s) 3239
PpuMI RGGWCCY 1 cut(s) 2713
PscI ACATGT 1 cut(s) 4084
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 2967
Psp5II RGGWCCY 1 cut(s) 2713
Psp6I CCWGG 1 cut(s) 2032
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 1 cut(s) 2032
PspPI GGNCC 7 cut(s) 289, 360, 730, 909, 1542, 1907, 2713
PspPPI RGGWCCY 1 cut(s) 2713
PstI CTGCAG 1 cut(s) 3538
PsuI RGATCY 8 cut(s) 53, 1058, 1097, 1574, 2463, 3028, 3194, 3741
PteI GCGCGC 1 cut(s) 2275
RseI CAYNNNNRTG 5 cut(s) 172, 198, 204, 2087, 2922
SacI GAGCTC 1 cut(s) 2967
SapI GCTCTTC 1 cut(s) 1026
SatI GCNGC 3 cut(s) 466, 2773, 3374
Sau96I GGNCC 7 cut(s) 289, 360, 730, 909, 1542, 1907, 2713
ScaI AGTACT 1 cut(s) 977
SchI GAGTC 8 cut(s) 305, 1344, 2059, 2142, 2491, 3611, 3680, 3701
ScrFI CCNGG 5 cut(s) 536, 1159, 1622, 2034, 3827
SduI GDGCHC 4 cut(s) 1291, 1763, 2967, 4059
SfaNI GCATC 7 cut(s) 205, 1427, 2227, 3541, 3604, 3763, 3901
SfcI CTRYAG 3 cut(s) 1368, 3534, 3555
SfoI GGCGCC 1 cut(s) 533
Sfr274I CTCGAG 1 cut(s) 3627
SfuI TTCGAA 1 cut(s) 791
SinI GGWCC 5 cut(s) 289, 909, 1542, 1907, 2713
SlaI CTCGAG 1 cut(s) 3627
SmiMI CAYNNNNRTG 5 cut(s) 172, 198, 204, 2087, 2922
SmlI CTYRAG 2 cut(s) 2384, 3627
SmoI CTYRAG 2 cut(s) 2384, 3627
SsiI CCGC 9 cut(s) 233, 466, 785, 1241, 1516, 2103, 2279, 3373, 4059
SspDI GGCGCC 1 cut(s) 531
SspI AATATT 1 cut(s) 2860
SspMI CTAG 6 cut(s) 918, 1899, 2558, 3377, 3437, 3674
SstI GAGCTC 1 cut(s) 2967
StyD4I CCNGG 5 cut(s) 534, 1157, 1620, 2032, 3825
StyI CCWWGG 5 cut(s) 672, 905, 2339, 3847, 3894
TaaI ACNGT 7 cut(s) 1265, 1286, 1365, 2516, 2533, 3071, 4036
TaqII GACCGA 1 cut(s) 4019
TatI WGTACW 3 cut(s) 567, 975, 4118
TauI GCSGC 2 cut(s) 468, 3376
TscAI CASTG 8 cut(s) 1270, 1289, 1368, 1515, 2465, 2713, 3225, 3538
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 1 cut(s) 2772
Tsp45I GTSAC 1 cut(s) 457
TspGWI ACGGA 2 cut(s) 74, 2489
TspRI CASTG 8 cut(s) 1270, 1289, 1368, 1515, 2465, 2713, 3225, 3538
Van91I CCANNNNNTGG 2 cut(s) 400, 860
VpaK11BI GGWCC 5 cut(s) 289, 909, 1542, 1907, 2713
XapI RAATTY 6 cut(s) 793, 946, 1081, 2038, 3309, 3947
XbaI TCTAGA 2 cut(s) 2557, 3673
XceI RCATGY 3 cut(s) 338, 3821, 4088
XcmI CCANNNNNNNNNTGG 2 cut(s) 3854, 3892
XhoI CTCGAG 1 cut(s) 3627
XmiI GTMKAC 1 cut(s) 3699
XmnI GAANNNNTTC 4 cut(s) 543, 2737, 2760, 3432
XspI CTAG 6 cut(s) 918, 1899, 2558, 3377, 3437, 3674
ZrmI AGTACT 1 cut(s) 977
Zsp2I ATGCAT 2 cut(s) 1554, 2353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.