Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009542

Physical Location & Seq

Genomic Coordinates Reverse (-)

12860134 .. 12860481

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0084000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGAGCACACCCTCGGCCCCCCCCGTGTCCACCCAGACTCTCGAATTGAAGCTCCGGTGCGCCGAAGCCACGAAGCGACGGCTGCGCGACCAGTACACCGTTCTGGGGCCGAGCCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAGTCAGAGACTAGCGGCGGAGTGTGCACATCTGGTGAGTCAGTGCAACAAGTTGGAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

5.94

Isoelectric Point (pI)

76.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10320
fragaria_vesca	FvH4_4g11470
malus_domestica	MD04G1037200.v1.1 MD09G1065200.v1.1
prunus_persica	Prupe.1G186600_v2.0.a1 Prupe.1G186600_v2.0.a1
pyrus_communis	pycom04g03030 pycom111g05510
rosa_chinensis	RchiOBHm_Chr4g0408181
rosa_laevigata	RLG00000008666 RLG00000035346
rosa_multiflora	Rmu_ssc0000039.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020510 Rroxscaffold_5G00352680
rosa_rugosa	Rorug04G0083900 Rorug04G0084000 Rorug05G0328300
rosa_samantha	Rh4AG148700 Rh4BG145500 Rh4CG155200 Rh4DG142000
rosa_wichuraiana	Rw4G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	133
AciI	CCGC	3 cut(s)	14, 215, 218
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	2 cut(s)	54, 229
Alw26I	GTCTC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	61, 153
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	108, 133
AspS9I	GGNCC	2 cut(s)	62, 153
AsuHPI	GGTGA	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	54, 229
BbvI	GCAGC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	129, 216
BlsI	GCNGC	2 cut(s)	130, 217
BmgT120I	GGNCC	2 cut(s)	62, 153
BmiI	GGNNCC	3 cut(s)	6, 64, 154
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	63, 155
BsiHKAI	GWGCWC	2 cut(s)	54, 229
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	63, 155
Bsp1286I	GDGCHC	2 cut(s)	54, 229
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	14, 215, 218
BspANI	GGCC	2 cut(s)	63, 155
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	6, 64, 154
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	108, 133
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 224
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	63, 155
BtsIMutI	CAGTG	1 cut(s)	248
CfoI	GCGC	2 cut(s)	108, 133
Cfr13I	GGNCC	2 cut(s)	62, 153
Csp6I	GTAC	1 cut(s)	140
CviJI	RGCY	7 cut(s)	63, 98, 114, 128, 155, 160, 179
CviKI_1	RGCY	7 cut(s)	63, 98, 114, 128, 155, 160, 179
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	233
FaiI	YATR	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	129, 216
Fsp4HI	GCNGC	2 cut(s)	129, 216
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	107, 132
GluI	GCNGC	2 cut(s)	129, 216
HaeIII	GGCC	2 cut(s)	63, 155
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	2 cut(s)	108, 133
Hin6I	GCGC	2 cut(s)	106, 131
HinP1I	GCGC	2 cut(s)	106, 131
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	41, 83, 202, 238
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	4 cut(s)	25, 76, 142, 227
Hpy188I	TCNGA	2 cut(s)	38, 207
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	4 cut(s)	25, 76, 142, 227
Hpy99I	CGWCG	2 cut(s)	29, 127
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	227, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 224
HpyF3I	CTNAG	1 cut(s)	174
HspAI	GCGC	2 cut(s)	106, 131
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	93, 114, 135, 150, 161, 218
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	212
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	54, 229
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	4 cut(s)	50, 77, 211, 247
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	18, 68, 177, 190
MspI	CCGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	128, 224
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	3 cut(s)	6, 64, 154
NmeAIII	GCCGAG	2 cut(s)	39, 181
PkrI	GCNGC	2 cut(s)	130, 217
PleI	GAGTC	4 cut(s)	49, 77, 210, 246
PpsI	GAGTC	4 cut(s)	49, 77, 210, 246
PspN4I	GGNNCC	3 cut(s)	6, 64, 154
PspPI	GGNCC	2 cut(s)	62, 153
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	129, 216
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	62, 153
SchI	GAGTC	4 cut(s)	50, 77, 211, 247
SduI	GDGCHC	2 cut(s)	54, 229
SetI	ASST	1 cut(s)	100
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	3 cut(s)	14, 215, 218
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	24, 44, 88
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.