Rh4CG155200

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
34253346 .. 34269633
16288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG155200.1

Sequence Viewer

Length: 3555 bp
ATGGAAGAGGTATGCGAGGGCAAGGACTTCTCCTTCCCGAAGCAAGAGGAGAAGATTCTCCACTACTGGTCCCAAATCAAAGCCTTCGAGACTCAATTGTCTCTCACCGAACACATGCCCGAGTACGTCTTCTACGACGGCCCCCCCTTCGCCACCGGCCTCCCTCACTACGGCCACATACTGGCCGGCACCATCAAGGACATCATCACGCGCTACCAGTCCATGACCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTTCCCGTCGAGAACGAGATTGATAAGAAGCTCGACATCAGGCGCCGGGAACAGGTTCTCGAAATGGGGATCGATAAGTACAACGAGGAGTGCCGGAGCATTGTTACTCGGTTTGTGGAGGAGTGGGAGAAGGTTATTGCGCGCACTGGGAGGTGGATCGATTTTCGGAACGATTATAAGACCATGGACTTGAAGTTTATGGAGAGTGTGTGGTGGGTTTTTGCTCAGATATATGATAAGGGCCTTGTCTATAAGGGCTTCAAGGTCATGCCGTACAGCACCGGTTGCAAGACACCGCTTTCGAATTTCGAGGCTAATCAAGATTACAAGGATGTTCCCGATCCAGAAGTTATGGTGGCTTTTCCAATTATTGGTGATTCTGACGAGGCAAGTTTTGTGGCGTGGACAACTACTCCGTGGACCCTTCCTAGCCATTTAGCGCTTTGTGTCAATGCAAATTTTACCTATTTGAAGGTTTGCAACAAGTACTCAAAAAAAGTTTACGTCGTTGCTGAATCTCGATTGTCAGCTCTTCCTAGTGACAAACCAAAAGAAAACGTACCAAATGGATCTGTTGATTCAAAAAAATTAAATTCAAAGAGCAAGGGATCCTCGGGTGGGAAAAAGGAAGCAGTTGACACATCATATGAAGTGTTGGAGAAAATGTCCGGGGCTTCATTAGTGGGGAAGAAGTATGAACCACCATTTGATTACTTTAAGGAGTTCTCTGATGTTGCATTTAGAGTTGTTGCGGACAACTATGTTACTGATGACAGTGGTACTGGAATTGTCCACTGTGCTCCTGCATTTGGTGAAGACGATTATCGTGTTTGCCTTGAAAATAAAGTTATCAGTAAGGGAGAGACCTTGATTGTAGCAGTTGATGAGGATGGATGCTTTACTGAAAAAATTACCGACTTCAGCAAGTGCTATGTCAAAAATGCAGATAAAGATATTATTGAAGCATTGAAGCGGAAAGGAAGGCTTGTTAAGTCTGGGACCATTATGCATTCTTATCCCCATTGCCCAAGATCTAAAACTCCACTTATTCAAAGAGCTGTTCCAAGTTGGTTTATCCGGGTGGAGCAGTTGAAAGAAAAATTGTTAGAAAACAACAAGCAGACATATTGGGTTCCTGATTTTGTGAAGGAAAAACGATTCCACAATTGGCTGGAAAATGCAAGAGATTGGGCAGTTAGTCGAAGTAGATTCTGGGGCACTCCTCTTCCTGTGTGGATTAGTGAGGATGGGGAGGAAATAGTAGTTATGGATTCCATTGAGAAGCTCGAAAAGCTTTCTGGTGTTAAGGTTTTTGATCTTCACCGGCACAATATCGATCATATCACTATTCCATCTAGCCGTGGTCCTCAATTTGGCGTTCTTCGACGTATTGATGATGTGTTTGATTGTTGGTTTGAGAGTGGTTCCATGCCTTATGCTTATATCCACTATCCTTTTGAGAATGTTGAACTTTTTGAGAAAAACTTTCCTGGAAATTTTGTGGCTGAAGGGCTGGATCAGACTCGTGGATGGTTCTACACTCTTATGGTGTTATCTACCGCATTATTTGGGAAACCTGCTTTTAAGAATCTCATTTGCAATGGACTCGTACTTGCTGAGGATGGAAAAAAAATGAGTAAAAGTCTGAAAAATTATCCTCCACCAGTTGAAGTTATCGATCAGTATGGAGCTGATGCAGTACGATTATACCTAATTAACTCTCCTGTTGTGCGCGCGGAACCATTACGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTCAAGGATGTATTTCTTCCATGGTACAATGCATATAGGTTCCTTGTCCAGAATGCAAAGAGACTTGAGATTGAAGGGTTTGCCCCTTTTGTTCCTATTGATCAAGCCACTCTACAAAAGTCATCTAATGTGCTTGACCAGTGGATCTACTCAGCCACACAGAGTCTTGTGTATTTTGTCCGTCAGGAGATGAACGGTTATCGACTTTATACGGTGGTTCCATATCTTTTGAAGTTTCTAGACAACTTGACTAACATCTATGTGAGGTGCAATCGCAAGAGGTTGAAGGGTCGTACAGGTGAAGAAGATTGTAGGGTGGCGCTCTCAACACTTTACAATGTCCTTTTGGTATCATGTAAAGCGATGGCTCCATTAACACCATTTTTCACTGAGGTCCTTTTTCAAAATATGCGAAAAGTTTCCAACACGGCAGAGGAAAGCATTCATCATTGCAGCTTTCCTGAAGCAGAAGGCAAGAGGGATGAACGTATTGAGCAAAGTGTTGCAAGGATGATGACAATAATTGATCTTGCCCGTAATATTCGTGAGAGACGTAACAAACCTCTTAAAACACCACTGAGGGAGATGGTTATCGTTCATCCTGATGTGGACTTTCTTGATGATATCGCTGGAAGGCTAAAAGAGTATGTGCTGGAGGAACTTAATGTGAGATCTCTTGTTCCATGTAATGATACACTGAAGTATGCTTCATTACGTGCTGAGCCTGATTTCAGCGTTTTGGGTAAGCGGCTAGGAAAACATATGGGAATTGTTGCCAAAGAAGTCAAGGCAATGTCACAGGAAAGCATTCTAGCATTTGAGAAATCCGGAGAAGTTACTCTTTCTGGTCATTGCTTAAAGCTGACTGATATTAAGGTTGTTAGGGATTTCAAGTGTCCTGATGGCACTGCAGTAGACGACGTGGATGCTACAGGAGATGGTGATGTTTTGGTGATTTTGGATTTACGTTCCGATGAGTCGTTGGCTGATGCGGGTGTTGCTCGAGAGATTGTCAACAGAATCCAGAAGTTAAGAAAGAAATCTGCTCTTGAACCTACTGACTCGGTGGAGGTCTACTTTGACTCTTTGGATGAAGATAAAGCAGATTCCCAAAGGATCTTGCAATCACAGGAACAATACATTAGGGATGCCATTGGTTCGCCATTGCTTCCTTCAAGTGTAATGCCATCACATGCTGTCCCTGTTGGGGAAGAGAGTTTCCTTGGGATTTCTGGCATTTCATTTGCTATCAAACTGGCCAGACCTGCCTTGGTTTTCGACTTGGATGCAATTGTTGCTTTATATTCAGCAGGAAACTCAGAATTCGCAAGGTGTCTGCAAACGTACTTGTTGTCAAGGGATCATGCAAATCTGAAGACCGAGTTTCAACATGGAAACGGGAAGATAACTGTTGATTGCATTGAAAATGTGCCCGCTGTGAGTTTGGTGTTGAGGAAACATGTGTATTTGACTGTTGGGGAGTTCTTTTGTAGAACAAACTCTGAGTAG

Protein Analysis

1184

Amino Acids

134.87

Weight (kDa)

6.11

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 19 - 670 4.1e-157 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 728 - 877 3.8e-26 Anticodon-binding domain of tRNA ligase
DUF5915 PF19302 897 - 1064 1.5e-25 Domain of unknown function (DUF5915)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AasI GACNNNNNNGTC 1 cut(s) 97
Acc36I ACCTGC 2 cut(s) 1855, 3319
AccB1I GGYRCC 2 cut(s) 188, 312
AccB7I CCANNNNNTGG 2 cut(s) 181, 641
AccI GTMKAC 2 cut(s) 2961, 3120
AccII CGCG 5 cut(s) 211, 244, 412, 2004, 2006
AccIII TCCGGA 1 cut(s) 2873
AciI CCGC 9 cut(s) 247, 566, 1022, 1243, 1830, 2006, 2794, 3038, 3480
AcoI YGGCCR 4 cut(s) 172, 183, 229, 3303
AcsI RAATTY 5 cut(s) 574, 727, 862, 1765, 3368
AcuI CTGAAG 5 cut(s) 1174, 1797, 2529, 2765, 3440
AcyI GRCGYC 1 cut(s) 313
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 8 cut(s) 170, 181, 322, 641, 888, 1079, 1643, 3253
AflIII ACRYGT 1 cut(s) 3505
AgeI ACCGGT 1 cut(s) 551
AjiI CACGTC 2 cut(s) 238, 2968
AjnI CCWGG 1 cut(s) 1759
AluBI AGCT 8 cut(s) 301, 800, 1328, 1555, 1564, 1961, 2502, 2908
AluI AGCT 8 cut(s) 301, 800, 1328, 1555, 1564, 1961, 2502, 2908
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
Ama87I CYCGRG 3 cut(s) 119, 883, 3048
Aor13HI TCCGGA 1 cut(s) 2873
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 8 cut(s) 139, 157, 172, 183, 229, 268, 511, 3303
ApeKI GCWGC 1 cut(s) 2499
ApoI RAATTY 5 cut(s) 574, 727, 862, 1765, 3368
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AsiGI ACCGGT 1 cut(s) 551
Asp700I GAANNNNTTC 4 cut(s) 324, 2464, 2487, 2853
AspLEI GCGC 9 cut(s) 213, 246, 315, 412, 414, 712, 2004, 2006, 2368
AspS9I GGNCC 7 cut(s) 69, 140, 511, 690, 1269, 1634, 2440
AsuC2I CCSGG 3 cut(s) 317, 940, 1349
AsuHPI GGTGA 7 cut(s) 97, 656, 1094, 1583, 2357, 2999, 3010
AsuII TTCGAA 1 cut(s) 572
AvaI CYCGRG 3 cut(s) 119, 883, 3048
AvaII GGWCC 5 cut(s) 69, 690, 1269, 1634, 2440
BaeGI GKGCMC 2 cut(s) 1490, 3480
BalI TGGCCA 1 cut(s) 3305
BamHI GGATCC 1 cut(s) 878
BanI GGYRCC 2 cut(s) 188, 312
BauI CACGAG 1 cut(s) 1794
BbsI GAAGAC 3 cut(s) 121, 1092, 3428
Bbv12I GWGCWC 1 cut(s) 1072
BbvCI CCTCAGC 1 cut(s) 1887
BbvI GCAGC 1 cut(s) 2511
BceAI ACGGC 6 cut(s) 154, 187, 283, 526, 1614, 2490
BcgI CGANNNNNNTGC 6 cut(s) 1858, 1892, 2954, 2988, 3314, 3348
BciT130I CCWGG 1 cut(s) 1761
BclI TGATCA 1 cut(s) 2146
BcnI CCSGG 3 cut(s) 317, 940, 1349
BcoDI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BfaI CTAG 6 cut(s) 699, 807, 1626, 2285, 2798, 2858
BfmI CTRYAG 2 cut(s) 2955, 2976
BfoI RGCGCY 3 cut(s) 316, 713, 2369
BfuAI ACCTGC 2 cut(s) 1855, 3319
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 2 cut(s) 1301, 2717
BisI GCNGC 3 cut(s) 247, 2500, 2795
BlpI GCTNAGC 1 cut(s) 2766
BlsI GCNGC 3 cut(s) 248, 2501, 2796
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 4 cut(s) 317, 940, 1349, 1761
Bme18I GGWCC 5 cut(s) 69, 690, 1269, 1634, 2440
BmeT110I CYCGRG 3 cut(s) 119, 883, 3048
BmgBI CACGTC 2 cut(s) 238, 2968
BmgT120I GGNCC 7 cut(s) 69, 140, 511, 690, 1269, 1634, 2440
BmrFI CCNGG 4 cut(s) 317, 940, 1349, 1761
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 6 cut(s) 1154, 1954, 2962, 3025, 3184, 3322
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 3 cut(s) 121, 1092, 3428
BpmI CTGGAG 1 cut(s) 2720
Bpu10I CCTNAGC 1 cut(s) 1887
Bpu1102I GCTNAGC 1 cut(s) 2766
Bpu14I TTCGAA 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 2132
BpuMI CCSGG 3 cut(s) 317, 940, 1349
Bsa29I ATCGAT 4 cut(s) 342, 429, 1605, 1947
BsaAI YACGTR 1 cut(s) 2762
BsaBI GATNNNNATC 1 cut(s) 2636
BsaHI GRCGYC 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 9 cut(s) 265, 453, 686, 882, 939, 1630, 2066, 3268, 3315
BsaWI WCCGGW 2 cut(s) 551, 2873
BsaXI ACNNNNNCTCC 6 cut(s) 464, 494, 667, 697, 920, 950
Bsc4I CCNNNNNNNGG 8 cut(s) 170, 181, 322, 641, 888, 1079, 1643, 3253
Bse118I RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
Bse1I ACTGG 8 cut(s) 71, 186, 217, 421, 1057, 1934, 2185, 3306
Bse3DI GCAATG 6 cut(s) 1291, 1876, 2494, 2844, 2896, 3209
Bse8I GATNNNNATC 1 cut(s) 2636
BseAI TCCGGA 1 cut(s) 2873
BseBI CCWGG 1 cut(s) 1761
BseCI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BseDI CCNNGG 9 cut(s) 265, 453, 686, 882, 939, 1630, 2066, 3268, 3315
BseJI GATNNNNATC 1 cut(s) 2636
BseLI CCNNNNNNNGG 8 cut(s) 170, 181, 322, 641, 888, 1079, 1643, 3253
BseMI GCAATG 6 cut(s) 1291, 1876, 2494, 2844, 2896, 3209
BseMII CTCAG 8 cut(s) 509, 1878, 2211, 2427, 2615, 2757, 3378, 3540
BseNI ACTGG 8 cut(s) 71, 186, 217, 421, 1057, 1934, 2185, 3306
BsePI GCGCGC 2 cut(s) 410, 2002
BseRI GAGGAG 4 cut(s) 62, 371, 404, 1482
BseSI GKGCMC 2 cut(s) 1490, 3480
BseXI GCAGC 1 cut(s) 2511
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BshFI GGCC 8 cut(s) 141, 159, 174, 185, 231, 270, 513, 3305
BshNI GGYRCC 2 cut(s) 188, 312
BshTI ACCGGT 1 cut(s) 551
BshVI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BsiHKAI GWGCWC 1 cut(s) 1072
BsiHKCI CYCGRG 3 cut(s) 119, 883, 3048
BslFI GGGAC 4 cut(s) 55, 272, 1282, 3230
BslI CCNNNNNNNGG 8 cut(s) 170, 181, 322, 641, 888, 1079, 1643, 3253
BsmAI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BsmBI CGTCTC 1 cut(s) 2590
BsmFI GGGAC 4 cut(s) 55, 272, 1282, 3230
BsmI GAATGC 4 cut(s) 1279, 2104, 2487, 2853
BsnI GGCC 8 cut(s) 141, 159, 174, 185, 231, 270, 513, 3305
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 3 cut(s) 119, 883, 3048
Bsp119I TTCGAA 1 cut(s) 572
Bsp1286I GDGCHC 3 cut(s) 1072, 1490, 3480
Bsp13I TCCGGA 1 cut(s) 2873
Bsp1720I GCTNAGC 1 cut(s) 2766
Bsp19I CCATGG 2 cut(s) 453, 2066
BspACI CCGC 9 cut(s) 247, 566, 1022, 1243, 1830, 2006, 2794, 3038, 3480
BspANI GGCC 8 cut(s) 141, 159, 174, 185, 231, 270, 513, 3305
BspCNI CTCAG 8 cut(s) 508, 1879, 2210, 2428, 2616, 2758, 3377, 3541
BspDI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BspEI TCCGGA 1 cut(s) 2873
BspFNI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BspMAI CTGCAG 1 cut(s) 2959
BspMI ACCTGC 2 cut(s) 1855, 3319
BspQI GCTCTTC 1 cut(s) 807
BspT104I TTCGAA 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 188, 312
BspTNI GGTCTC 1 cut(s) 1127
BsrDI GCAATG 6 cut(s) 1291, 1876, 2494, 2844, 2896, 3209
BsrFI RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
BsrI ACTGG 8 cut(s) 71, 186, 217, 421, 1057, 1934, 2185, 3306
BssAI RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
BssECI CCNNGG 9 cut(s) 265, 453, 686, 882, 939, 1630, 2066, 3268, 3315
BssHII GCGCGC 2 cut(s) 410, 2002
BssNI GRCGYC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 1794
BssT1I CCWWGG 4 cut(s) 453, 2066, 3268, 3315
Bst2BI CACGAG 1 cut(s) 1794
Bst2UI CCWGG 1 cut(s) 1761
Bst4CI ACNGT 6 cut(s) 1046, 1067, 2243, 2260, 3457, 3520
Bst6I CTCTTC 3 cut(s) 807, 1500, 3252
BstACI GRCGYC 1 cut(s) 313
BstAPI GCANNNNNTGC 2 cut(s) 555, 3341
BstBAI YACGTR 1 cut(s) 2762
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 4 cut(s) 187, 412, 2004, 3480
BstDEI CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 2766, 3364, 3549
BstDSI CCRYGG 5 cut(s) 265, 453, 686, 1630, 2066
BstFNI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BstH2I RGCGCY 3 cut(s) 316, 713, 2369
BstHHI GCGC 9 cut(s) 213, 246, 315, 412, 414, 712, 2004, 2006, 2368
BstMAI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BstMWI GCNNNNNNNGC 7 cut(s) 252, 261, 555, 1561, 3044, 3311, 3341
BstNI CCWGG 1 cut(s) 1761
BstNSI RCATGY 3 cut(s) 118, 3242, 3509
BstSCI CCNGG 4 cut(s) 315, 938, 1347, 1759
BstSFI CTRYAG 2 cut(s) 2955, 2976
BstSLI GKGCMC 2 cut(s) 1490, 3480
BstUI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BstV1I GCAGC 1 cut(s) 2511
BstV2I GAAGAC 3 cut(s) 121, 1092, 3428
BstX2I RGATCY 6 cut(s) 839, 878, 1301, 2190, 2717, 3162
BstYI RGATCY 6 cut(s) 839, 878, 1301, 2190, 2717, 3162
Bsu15I ATCGAT 4 cut(s) 342, 429, 1605, 1947
BsuRI GGCC 8 cut(s) 141, 159, 174, 185, 231, 270, 513, 3305
BsuTUI ATCGAT 4 cut(s) 342, 429, 1605, 1947
BtgI CCRYGG 5 cut(s) 265, 453, 686, 1630, 2066
BtgZI GCGATG 1 cut(s) 2423
BtrI CACGTC 2 cut(s) 238, 2968
BtsI GCAGTG 1 cut(s) 2952
BtsIMutI CAGTG 8 cut(s) 414, 1051, 1063, 2192, 2433, 2621, 2741, 2952
BveI ACCTGC 2 cut(s) 1855, 3319
Cac8I GCNNGC 4 cut(s) 187, 412, 2004, 3480
CfoI GCGC 9 cut(s) 213, 246, 315, 412, 414, 712, 2004, 2006, 2368
Cfr10I RCCGGY 5 cut(s) 155, 185, 227, 551, 1593
Cfr13I GGNCC 7 cut(s) 69, 140, 511, 690, 1269, 1634, 2440
ClaI ATCGAT 4 cut(s) 342, 429, 1605, 1947
CspAI ACCGGT 1 cut(s) 551
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
DdeI CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 2766, 3364, 3549
DinI GGCGCC 1 cut(s) 314
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 4 cut(s) 172, 183, 229, 3303
Eam1104I CTCTTC 3 cut(s) 807, 1500, 3252
EarI CTCTTC 3 cut(s) 807, 1500, 3252
Eco130I CCWWGG 4 cut(s) 453, 2066, 3268, 3315
Eco31I GGTCTC 1 cut(s) 1127
Eco32I GATATC 1 cut(s) 2671
Eco47I GGWCC 5 cut(s) 69, 690, 1269, 1634, 2440
Eco47III AGCGCT 1 cut(s) 711
Eco57I CTGAAG 5 cut(s) 1174, 1797, 2529, 2765, 3440
Eco88I CYCGRG 3 cut(s) 119, 883, 3048
EcoO109I RGGNCCY 2 cut(s) 511, 2440
EcoRI GAATTC 1 cut(s) 3368
EcoRII CCWGG 1 cut(s) 1759
EcoRV GATATC 1 cut(s) 2671
EcoT14I CCWWGG 4 cut(s) 453, 2066, 3268, 3315
EcoT22I ATGCAT 2 cut(s) 1281, 2080
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
ErhI CCWWGG 4 cut(s) 453, 2066, 3268, 3315
Esp3I CGTCTC 1 cut(s) 2590
FalI AAGNNNNNCTT 4 cut(s) 1239, 1271, 2871, 2903
FaqI GGGAC 4 cut(s) 55, 272, 1282, 3230
FauI CCCGC 2 cut(s) 3031, 3487
FauNDI CATATG 2 cut(s) 916, 2808
FbaI TGATCA 1 cut(s) 2146
FblI GTMKAC 2 cut(s) 2961, 3120
Fnu4HI GCNGC 3 cut(s) 247, 2500, 2795
Fsp4HI GCNGC 3 cut(s) 247, 2500, 2795
FspBI CTAG 6 cut(s) 699, 807, 1626, 2285, 2798, 2858
GlaI GCGC 9 cut(s) 212, 245, 314, 411, 413, 711, 2003, 2005, 2367
GluI GCNGC 3 cut(s) 247, 2500, 2795
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 2720
HaeII RGCGCY 3 cut(s) 316, 713, 2369
HaeIII GGCC 8 cut(s) 141, 159, 174, 185, 231, 270, 513, 3305
HhaI GCGC 9 cut(s) 213, 246, 315, 412, 414, 712, 2004, 2006, 2368
Hin1I GRCGYC 1 cut(s) 313
Hin6I GCGC 9 cut(s) 211, 244, 313, 410, 412, 710, 2002, 2004, 2366
HinP1I GCGC 9 cut(s) 211, 244, 313, 410, 412, 710, 2002, 2004, 2366
HincII GTYRAC 2 cut(s) 907, 3061
HindII GTYRAC 2 cut(s) 907, 3061
HindIII AAGCTT 1 cut(s) 1562
HphI GGTGA 7 cut(s) 97, 656, 1094, 1583, 2357, 2999, 3010
Hpy166II GTNNAC 9 cut(s) 675, 690, 772, 907, 1063, 2656, 2962, 3061, 3121
Hpy8I GTNNAC 9 cut(s) 675, 690, 772, 907, 1063, 2656, 2962, 3061, 3121
Hpy99I CGWCG 5 cut(s) 140, 281, 779, 1659, 2969
HpyCH4III ACNGT 6 cut(s) 1046, 1067, 2243, 2260, 3457, 3520
HpyF10VI GCNNNNNNNGC 7 cut(s) 252, 261, 555, 1561, 3044, 3311, 3341
HpyF3I CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 2766, 3364, 3549
Hsp92I GRCGYC 1 cut(s) 313
HspAI GCGC 9 cut(s) 211, 244, 313, 410, 412, 710, 2002, 2004, 2366
KasI GGCGCC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 2873
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 2146
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 5 cut(s) 366, 1075, 1354, 1958, 2419
Lsp1109I GCAGC 1 cut(s) 2511
LweI GCATC 6 cut(s) 1154, 1954, 2962, 3025, 3184, 3322
MaeI CTAG 6 cut(s) 699, 807, 1626, 2285, 2798, 2858
MaeIII GTNAC 7 cut(s) 238, 373, 809, 1033, 2600, 2841, 2881
MfeI CAATTG 3 cut(s) 95, 1435, 3336
MflI RGATCY 6 cut(s) 839, 878, 1301, 2190, 2717, 3162
MhlI GDGCHC 3 cut(s) 1072, 1490, 3480
MlsI TGGCCA 1 cut(s) 3305
MluNI TGGCCA 1 cut(s) 3305
Mly113I GGCGCC 1 cut(s) 313
MlyI GAGTC 7 cut(s) 85, 1786, 1869, 2218, 3032, 3101, 3122
MmeI TCCRAC 2 cut(s) 906, 2493
Mox20I TGGCCA 1 cut(s) 3305
Mph1103I ATGCAT 2 cut(s) 1281, 2080
MroI TCCGGA 1 cut(s) 2873
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 4 cut(s) 324, 2464, 2487, 2853
MscI TGGCCA 1 cut(s) 3305
MslI CAYNNNNRTG 3 cut(s) 1814, 2306, 2649
Msp20I TGGCCA 1 cut(s) 3305
MspA1I CMGCKG 1 cut(s) 3482
MspR9I CCNGG 4 cut(s) 317, 940, 1349, 1761
MunI CAATTG 3 cut(s) 95, 1435, 3336
Mva1269I GAATGC 4 cut(s) 1279, 2104, 2487, 2853
MvaI CCWGG 1 cut(s) 1761
MvnI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
MwoI GCNNNNNNNGC 7 cut(s) 252, 261, 555, 1561, 3044, 3311, 3341
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 313
NciI CCSGG 3 cut(s) 317, 940, 1349
NcoI CCATGG 2 cut(s) 453, 2066
NdeI CATATG 2 cut(s) 916, 2808
NgoMIV GCCGGC 1 cut(s) 185
NmuCI GTSAC 3 cut(s) 238, 809, 2841
NsiI ATGCAT 2 cut(s) 1281, 2080
NspI RCATGY 3 cut(s) 118, 3242, 3509
NspV TTCGAA 1 cut(s) 572
PaeR7I CTCGAG 1 cut(s) 3048
PauI GCGCGC 2 cut(s) 410, 2002
PciI ACATGT 1 cut(s) 3505
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 273, 2596
PctI GAATGC 4 cut(s) 1279, 2104, 2487, 2853
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 4 cut(s) 324, 2464, 2487, 2853
PflMI CCANNNNNTGG 2 cut(s) 181, 641
PfoI TCCNGGA 1 cut(s) 1759
PinAI ACCGGT 1 cut(s) 551
PkrI GCNGC 3 cut(s) 248, 2501, 2796
PleI GAGTC 7 cut(s) 85, 1786, 1869, 2217, 3031, 3101, 3122
PluTI GGCGCC 1 cut(s) 316
PpsI GAGTC 7 cut(s) 85, 1786, 1869, 2217, 3031, 3101, 3122
Ppu21I YACGTR 1 cut(s) 2762
PpuMI RGGWCCY 1 cut(s) 2440
PscI ACATGT 1 cut(s) 3505
PsiI TTATAA 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 2440
Psp6I CCWGG 1 cut(s) 1759
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 1 cut(s) 1759
PspPI GGNCC 7 cut(s) 69, 140, 511, 690, 1269, 1634, 2440
PspPPI RGGWCCY 1 cut(s) 2440
PstI CTGCAG 1 cut(s) 2959
PsuI RGATCY 6 cut(s) 839, 878, 1301, 2190, 2717, 3162
PteI GCGCGC 2 cut(s) 410, 2002
RseI CAYNNNNRTG 3 cut(s) 1814, 2306, 2649
SapI GCTCTTC 1 cut(s) 807
SatI GCNGC 3 cut(s) 247, 2500, 2795
Sau96I GGNCC 7 cut(s) 69, 140, 511, 690, 1269, 1634, 2440
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 7 cut(s) 85, 1786, 1869, 2218, 3032, 3101, 3122
ScrFI CCNGG 4 cut(s) 317, 940, 1349, 1761
SduI GDGCHC 3 cut(s) 1072, 1490, 3480
SfaNI GCATC 6 cut(s) 1154, 1954, 2962, 3025, 3184, 3322
SfcI CTRYAG 2 cut(s) 2955, 2976
SfoI GGCGCC 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 3048
SfuI TTCGAA 1 cut(s) 572
SinI GGWCC 5 cut(s) 69, 690, 1269, 1634, 2440
SlaI CTCGAG 1 cut(s) 3048
SmiMI CAYNNNNRTG 3 cut(s) 1814, 2306, 2649
SmlI CTYRAG 2 cut(s) 2111, 3048
SmoI CTYRAG 2 cut(s) 2111, 3048
SsiI CCGC 9 cut(s) 247, 566, 1022, 1243, 1830, 2006, 2794, 3038, 3480
SspDI GGCGCC 1 cut(s) 312
SspI AATATT 1 cut(s) 2587
SspMI CTAG 6 cut(s) 699, 807, 1626, 2285, 2798, 2858
StyD4I CCNGG 4 cut(s) 315, 938, 1347, 1759
StyI CCWWGG 4 cut(s) 453, 2066, 3268, 3315
TaaI ACNGT 6 cut(s) 1046, 1067, 2243, 2260, 3457, 3520
TaqII GACCGA 1 cut(s) 3440
TatI WGTACW 2 cut(s) 348, 756
TauI GCSGC 2 cut(s) 249, 2797
TscAI CASTG 8 cut(s) 421, 1051, 1070, 2192, 2440, 2628, 2748, 2959
TseFI GTSAC 3 cut(s) 238, 809, 2841
TseI GCWGC 1 cut(s) 2499
Tsp45I GTSAC 3 cut(s) 238, 809, 2841
TspGWI ACGGA 2 cut(s) 675, 2216
TspRI CASTG 8 cut(s) 421, 1051, 1070, 2192, 2440, 2628, 2748, 2959
Van91I CCANNNNNTGG 2 cut(s) 181, 641
VpaK11BI GGWCC 5 cut(s) 69, 690, 1269, 1634, 2440
XapI RAATTY 5 cut(s) 574, 727, 862, 1765, 3368
XbaI TCTAGA 1 cut(s) 2284
XceI RCATGY 3 cut(s) 118, 3242, 3509
XcmI CCANNNNNNNNNTGG 1 cut(s) 3313
XhoI CTCGAG 1 cut(s) 3048
XmiI GTMKAC 2 cut(s) 2961, 3120
XmnI GAANNNNTTC 4 cut(s) 324, 2464, 2487, 2853
XspI CTAG 6 cut(s) 699, 807, 1626, 2285, 2798, 2858
ZrmI AGTACT 1 cut(s) 758
Zsp2I ATGCAT 2 cut(s) 1281, 2080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.