RLG00000008666

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
34573354 .. 34588867
15514 bp
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UTR
Exon/CDS
Intron
RLM00000008666

Sequence Viewer

Length: 3561 bp
ATGGAAGAGGTATGCGAGGGCAAGGACTTCTCCTTCCCGAAGCAGGAGGAGAAGATTCTCCACTACTGGTCCCAAATCAAAGCCTTCGAGACTCAATTGTCTCTCACCGAACACATGCCCGAGTACGTCTTCTACGACGGTCCCCCCTTCGCCACCGGCCTCCCTCACTACGGCCACATACTGGCCGGCACCATCAAGGACATCATCACGCGCTACCAGTCCATGATCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTTCCCGTCGAGAACGAGATTGATAAGAAGCTCGATATCAGGCGCCGGGAACAGGTTCTCGAAATGGGGATCGATAAGTACAACGAGGAGTGCAGGAGCATTGTTACTCGGTTTGTGGAGGAATGGGAGAAGGTGATTACGCGAACTGGGAGGTGGATCGATTTTCGGAACGATTATAAGACCATGGACTTGAAGTTTATGGAGAGTGTGTGGTGGGTTTTTGCTCAGATATATGATAAGGGCCTTGTGTATAAGGGCTTCAAGGTCATGCCGTACAGCACCGGTTGCAAGACACCGCTTTCGAATTTCGAGGCTAATCAAGATTACAAGGATGTTCCTGATCCTGAAGTTATGGTGGCTTTTCCAATTATTGGTGATTCTGACGAGGCAAGTTTTGTGGCTTGGACAACTACTCCGTGGACCCTTCCTAGCCATTTAGCGCTTTGTGTCAATGCAAATTTTACCTATTTGAAGGTTCGCAACAAGTACTCAAAAAAAGTTTACGTCGTTGCCGAATCTCGATTGTCAGCTCTTCCTAATGACAAACCAAAAGAAAATGTACCAAATGGATCTGTTGATTCAAAAAAATTAAATTCAAAGACCAAGGGATCCTCGGGTGGGAAAAAGGAAGCAGTTGACACATCATATGAAGTGTTGGAGAAACTGTCCGGGGCTTCATTAGTGGGGAAGAAGTATGAACCACCATTTGATTACTTTAAGGAGTTCTCTGATGTTGCATTTAGAGTTGTTGCGGACAACTATGTTACTGATGACAGTGGTACTGGAATTGTCCACTGTGCTCCTGCATTTGGTGAAGACGATTATCGTGTTTGCCTTGAAAATAAAGTAATCAGTAAGGGAGAGACCTTGATTGTAGCAGTTGATGAGGATGGATGCTTTACTGAAAAAATTACCGACTTCAGCAAGTGCTATGTCAAAAATGCAGATAAAGATATTATTGAAGCACTGAAGCAAAAGGGTAGGCTTGTTAAGTCTGGAACCATTATGCATTCTTATCCCCACTGCCCAAGATCTAAAACTCCACTTATTCAAAGAGCTGTTCCAAGTTGGTTTATCCGGGTGGAGCAGTTGAAAGAAAATTTGTTAGAAAACAACAAGCAGACATACTGGGTTCCTGATTTTGTGAAGGAAAAACGATTCCACAATTGGCTGGAAAATGCAAGAGATTGGGCAGTGAGTCGAAGTAGATTCTGGGGCACTCCTCTTCCTGTGTGGATTAGTGAGGATGGTGAGGAAATAGTAGTTATGGATTCCATTGAGAAGCTCGAAAAGCTTTCTGGTGTTAAGGTTTTTGATCTTCACCGGCACAATATTGATCATATCACTATTCCATCTAGCCGTGGTCCTCAATTTGGTGTTCTTCGACGTATTGATGATGTGTTTGATTGTTGGTTTGAGAGTGGTTCCATGCCTTATGCTTATATCCACTATCCTTTTGAGAATGTTGAACTTTTCGAGAAAAACTTTCCTGGAAATTTTGTGGCCGAAGGGCTGGATCAGACTCGTGGATGGTTCTACACTCTTATGGTGTTATCTACTGCATTATTTGGGAAACCTGCTTTTAAGAATCTCATTTGCAATGGACTCGTACTTGCTGAGGATGGAAAAAAAATGAGTAAAAGTCTGAAAAATTATCCTCCACCAATTGAAGTTATCGATCAGTATGGAGCTGATGCGGTACGATTATACCTAATTAACTCTCCTGTTGTGCGCGCGGAACCATTACGTTTCAAGAAGGAAGGAGTTTATGGTGTTGTCAAGGATGTATTTCTTCCATGGTACAATGCATATAGGTTCCTTGTCCAGAATGCAAAGAGACTTGAGATTGAAGGGTTTGCCCCTTTTGTTCCAATTGATCAAGCCACTTTACAAAAGTCATCTAATGTGCTTGACCAGTGGATCTACTCAGCCACACAGAGTCTTGTGTATTTTGTCCGTCAGGAGATGAATGGTTATCGACTTTATACGGTGGTTCCATATCTTTTGAAGTTTCTAGACAACTTGACAAATATCTATGTGAGGTGCAATCGCAGGAGGTTGAAGGGTCGTACAGGTGAAGAAGATTGTAGGGTGGCGCTCTCAACACTTTACAATGTCCTTTTGGTATCATGTAAAGCGATGGCTCCATTAACACCATTTTTCACTGAGGTCCTTTTTCAAAATATGCGGAAAGTTTCCAACACGGCAGAGGAAAGCATTCATCATTGCTGCTTTCCTGAAGCAGAAGGCAAGAGGGATGAACGTATTGAACAAAGTGTTGCAAGGATGATGACAATAATTGATCTTGCCCGTAATATTCGTGAGAGACATAACAAACCTCTTAAAACACCACTCAGGGAGATGGTTATTGTTCATCCTGATGTGGACTTTCTTGATGATATCGCTGGAAAGCTAAAAGAGTATGTGCTGGAGGAACTTAATGTGCGATCTCTTGTTCCATGTAATGATACACTGAAGTATGCTTCATTACGTGCAGAGCCCGATTTCAGCGTTTTGGGTAAGCGGCTAGGAAAACATATGGGAATTGTTGCCAAAGAAGTCAAGGCAATGTCACAGGAAAGCATTCTAGCATTTGAGAAATCCGGAGAAGTTACTCTTTCTGGTCATTGCTTAAAGCTGACTGATATTAAGGTTGTTAGGGATTTCAAGCGTCCTGATGGCACTGCAGCAGTCGATGTGGATGCTACAGGAGATGGTGATGTTTTGGTGATTTTGGATTTACGTCCGGATGAGTCGTTGGCTGATGCAGGTGTTGCTCGAGAGATTGTCAACAGAATCCAGAAGTTAAGAAAGAAATCTGCTCTAGAACCTACTGACTCGGTGGAGGTCTATTTTGACTCTTTGGATCAAGATAAAGCAGTTTCCCAAAGGATCTTGCAATCACAGGAACAATACATTAGGGATGCCATTGGTTCGCCGTTGCTTCCTTCAAGTTTGATGCCATCACATGCTGTCCCAGTTGGGGAAGAGAGTTTCAATGGGATTTCAGTTTCATCTGATGTCAAACTTTCATTTGCTATCAAACTGGCCAGACCTGCCTTAGTTTTCAACTCGGATGCAATTGTTGCTTTATATTCAGGAAACTCAGAATTCGCAAGGTGTCTGCAAACGTACTTGTTGTCAAGGGATCATGCAAATTTGAAGACTGAGTTTCAACATGGAAACGGGAAGATAACTGTTGATTGCATTGAAAATGTGCCCGCTGTGAGTTTGGTGTTGAGGGAACATTTGTATTTGACTGTTGGGGAGTTCTTTTGTAGAACAAACTGA

Protein Analysis

1187

Amino Acids

135.23

Weight (kDa)

6.23

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1 PF00133 19 - 670 2.2e-156 tRNA synthetases class I (I, L, M and V)
Anticodon_1 PF08264 728 - 877 3.5e-25 Anticodon-binding domain of tRNA ligase
DUF5915 PF19302 897 - 1064 4.4e-25 Domain of unknown function (DUF5915)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AarI CACCTGC 1 cut(s) 3029
AasI GACNNNNNNGTC 1 cut(s) 97
Acc36I ACCTGC 3 cut(s) 1855, 3029, 3334
AccB1I GGYRCC 2 cut(s) 188, 312
AccB7I CCANNNNNTGG 2 cut(s) 181, 641
AccII CGCG 5 cut(s) 211, 244, 412, 2004, 2006
AccIII TCCGGA 2 cut(s) 2873, 3016
AciI CCGC 8 cut(s) 247, 566, 1022, 1967, 2006, 2458, 2794, 3492
AcoI YGGCCR 5 cut(s) 172, 183, 229, 1773, 3318
AcsI RAATTY 7 cut(s) 574, 727, 862, 1369, 1765, 3380, 3427
AcuI CTGAAG 5 cut(s) 636, 1174, 1259, 2529, 2765
AcyI GRCGYC 1 cut(s) 313
AfeI AGCGCT 1 cut(s) 711
AfiI CCNNNNNNNGG 9 cut(s) 43, 170, 181, 322, 641, 888, 1079, 1643, 3253
AgeI ACCGGT 1 cut(s) 551
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 1759
AluBI AGCT 8 cut(s) 301, 800, 1328, 1555, 1564, 1961, 2683, 2908
AluI AGCT 8 cut(s) 301, 800, 1328, 1555, 1564, 1961, 2683, 2908
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
Ama87I CYCGRG 3 cut(s) 119, 883, 3048
Aor13HI TCCGGA 2 cut(s) 2873, 3016
Aor51HI AGCGCT 1 cut(s) 711
AoxI GGCC 8 cut(s) 157, 172, 183, 229, 268, 511, 1773, 3318
ApeKI GCWGC 2 cut(s) 2499, 2957
ApoI RAATTY 7 cut(s) 574, 727, 862, 1369, 1765, 3380, 3427
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
AsiGI ACCGGT 1 cut(s) 551
Asp700I GAANNNNTTC 3 cut(s) 324, 2487, 2853
AspLEI GCGC 7 cut(s) 213, 246, 315, 712, 2004, 2006, 2368
AspS9I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
AsuC2I CCSGG 3 cut(s) 317, 940, 1349
AsuHPI GGTGA 9 cut(s) 97, 415, 656, 1094, 1532, 1583, 2357, 2999, 3010
AsuII TTCGAA 1 cut(s) 572
AvaI CYCGRG 3 cut(s) 119, 883, 3048
AvaII GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
BaeGI GKGCMC 2 cut(s) 1490, 3492
BalI TGGCCA 1 cut(s) 3320
BamHI GGATCC 1 cut(s) 878
BanI GGYRCC 2 cut(s) 188, 312
BanII GRGCYC 1 cut(s) 2772
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BauI CACGAG 1 cut(s) 1794
BbsI GAAGAC 3 cut(s) 121, 1092, 3440
Bbv12I GWGCWC 1 cut(s) 1072
BbvCI CCTCAGC 1 cut(s) 1887
BbvI GCAGC 2 cut(s) 2486, 2969
BceAI ACGGC 6 cut(s) 187, 283, 526, 1614, 2490, 3193
BcgI CGANNNNNNTGC 4 cut(s) 1858, 1892, 2954, 2988
BciT130I CCWGG 1 cut(s) 1761
BclI TGATCA 2 cut(s) 1606, 2146
BcnI CCSGG 3 cut(s) 317, 940, 1349
BcoDI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BfaI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
BfmI CTRYAG 2 cut(s) 2955, 2976
BfoI RGCGCY 3 cut(s) 316, 713, 2369
BfuAI ACCTGC 3 cut(s) 1855, 3029, 3334
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 1301
BisI GCNGC 4 cut(s) 247, 2500, 2795, 2958
BlsI GCNGC 4 cut(s) 248, 2501, 2796, 2959
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 4 cut(s) 317, 940, 1349, 1761
Bme18I GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
BmeT110I CYCGRG 3 cut(s) 119, 883, 3048
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
BmrFI CCNGG 4 cut(s) 317, 940, 1349, 1761
BmrI ACTGGG 3 cut(s) 426, 1408, 3242
BmsI GCATC 7 cut(s) 1154, 1954, 2962, 3025, 3184, 3219, 3337
BmuI ACTGGG 3 cut(s) 426, 1408, 3242
BpiI GAAGAC 3 cut(s) 121, 1092, 3440
BpmI CTGGAG 1 cut(s) 2720
Bpu10I CCTNAGC 1 cut(s) 1887
Bpu14I TTCGAA 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 2132
BpuMI CCSGG 3 cut(s) 317, 940, 1349
Bsa29I ATCGAT 3 cut(s) 342, 429, 1947
BsaAI YACGTR 1 cut(s) 2762
BsaHI GRCGYC 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 8 cut(s) 265, 453, 686, 873, 882, 939, 1630, 2066
BsaWI WCCGGW 3 cut(s) 551, 2873, 3016
BsaXI ACNNNNNCTCC 6 cut(s) 464, 494, 667, 697, 920, 950
Bsc4I CCNNNNNNNGG 9 cut(s) 43, 170, 181, 322, 641, 888, 1079, 1643, 3253
Bse118I RCCGGY 4 cut(s) 155, 185, 551, 1593
Bse1I ACTGG 9 cut(s) 71, 186, 217, 421, 1057, 1403, 2185, 3248, 3321
Bse3DI GCAATG 4 cut(s) 1876, 2494, 2844, 2896
BseAI TCCGGA 2 cut(s) 2873, 3016
BseBI CCWGG 1 cut(s) 1761
BseCI ATCGAT 3 cut(s) 342, 429, 1947
BseDI CCNNGG 8 cut(s) 265, 453, 686, 873, 882, 939, 1630, 2066
BseLI CCNNNNNNNGG 9 cut(s) 43, 170, 181, 322, 641, 888, 1079, 1643, 3253
BseMI GCAATG 4 cut(s) 1876, 2494, 2844, 2896
BseMII CTCAG 7 cut(s) 509, 1878, 2211, 2427, 2638, 3390, 3429
BseNI ACTGG 9 cut(s) 71, 186, 217, 421, 1057, 1403, 2185, 3248, 3321
BsePI GCGCGC 1 cut(s) 2002
BseRI GAGGAG 3 cut(s) 62, 371, 1482
BseSI GKGCMC 2 cut(s) 1490, 3492
BseXI GCAGC 2 cut(s) 2486, 2969
BseYI CCCAGC 1 cut(s) 255
BsgI GTGCAG 2 cut(s) 382, 2784
Bsh1236I CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BshFI GGCC 8 cut(s) 159, 174, 185, 231, 270, 513, 1775, 3320
BshNI GGYRCC 2 cut(s) 188, 312
BshTI ACCGGT 1 cut(s) 551
BshVI ATCGAT 3 cut(s) 342, 429, 1947
BsiHKAI GWGCWC 1 cut(s) 1072
BsiHKCI CYCGRG 3 cut(s) 119, 883, 3048
BsiSI CCGG 9 cut(s) 156, 186, 316, 552, 939, 1348, 1594, 2874, 3017
BslFI GGGAC 4 cut(s) 55, 126, 272, 3230
BslI CCNNNNNNNGG 9 cut(s) 43, 170, 181, 322, 641, 888, 1079, 1643, 3253
BsmAI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BsmFI GGGAC 4 cut(s) 55, 126, 272, 3230
BsmI GAATGC 4 cut(s) 1279, 2104, 2487, 2853
BsnI GGCC 8 cut(s) 159, 174, 185, 231, 270, 513, 1775, 3320
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 3 cut(s) 119, 883, 3048
Bsp119I TTCGAA 1 cut(s) 572
Bsp1286I GDGCHC 4 cut(s) 1072, 1490, 2772, 3492
Bsp13I TCCGGA 2 cut(s) 2873, 3016
Bsp19I CCATGG 2 cut(s) 453, 2066
BspACI CCGC 8 cut(s) 247, 566, 1022, 1967, 2006, 2458, 2794, 3492
BspANI GGCC 8 cut(s) 159, 174, 185, 231, 270, 513, 1775, 3320
BspCNI CTCAG 7 cut(s) 508, 1879, 2210, 2428, 2637, 3389, 3430
BspDI ATCGAT 3 cut(s) 342, 429, 1947
BspEI TCCGGA 2 cut(s) 2873, 3016
BspFNI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BspMAI CTGCAG 1 cut(s) 2959
BspMI ACCTGC 3 cut(s) 1855, 3029, 3334
BspQI GCTCTTC 1 cut(s) 807
BspT104I TTCGAA 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 188, 312
BspTNI GGTCTC 1 cut(s) 1127
BsrDI GCAATG 4 cut(s) 1876, 2494, 2844, 2896
BsrFI RCCGGY 4 cut(s) 155, 185, 551, 1593
BsrI ACTGG 9 cut(s) 71, 186, 217, 421, 1057, 1403, 2185, 3248, 3321
BssAI RCCGGY 4 cut(s) 155, 185, 551, 1593
BssECI CCNNGG 8 cut(s) 265, 453, 686, 873, 882, 939, 1630, 2066
BssHII GCGCGC 1 cut(s) 2002
BssNI GRCGYC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 1794
BssT1I CCWWGG 3 cut(s) 453, 873, 2066
Bst2BI CACGAG 1 cut(s) 1794
Bst2UI CCWGG 1 cut(s) 1761
Bst4CI ACNGT 7 cut(s) 140, 936, 1046, 1067, 2260, 3469, 3532
Bst6I CTCTTC 3 cut(s) 807, 1500, 3252
BstACI GRCGYC 1 cut(s) 313
BstAPI GCANNNNNTGC 3 cut(s) 555, 3044, 3356
BstBAI YACGTR 1 cut(s) 2762
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 187, 2004, 3492
BstDEI CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 3331, 3376, 3438
BstDSI CCRYGG 5 cut(s) 265, 453, 686, 1630, 2066
BstFNI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BstH2I RGCGCY 3 cut(s) 316, 713, 2369
BstHHI GCGC 7 cut(s) 213, 246, 315, 712, 2004, 2006, 2368
BstMAI GTCTC 5 cut(s) 83, 105, 1127, 2101, 2590
BstMWI GCNNNNNNNGC 7 cut(s) 252, 261, 555, 1561, 3044, 3326, 3356
BstNI CCWGG 1 cut(s) 1761
BstNSI RCATGY 2 cut(s) 118, 3242
BstSCI CCNGG 4 cut(s) 315, 938, 1347, 1759
BstSFI CTRYAG 2 cut(s) 2955, 2976
BstSLI GKGCMC 2 cut(s) 1490, 3492
BstUI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
BstV1I GCAGC 2 cut(s) 2486, 2969
BstV2I GAAGAC 3 cut(s) 121, 1092, 3440
BstX2I RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
BstYI RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
Bsu15I ATCGAT 3 cut(s) 342, 429, 1947
BsuRI GGCC 8 cut(s) 159, 174, 185, 231, 270, 513, 1775, 3320
BsuTUI ATCGAT 3 cut(s) 342, 429, 1947
BtgI CCRYGG 5 cut(s) 265, 453, 686, 1630, 2066
BtgZI GCGATG 1 cut(s) 2423
BtrI CACGTC 1 cut(s) 238
BtsI GCAGTG 3 cut(s) 1291, 1470, 2952
BtsIMutI CAGTG 9 cut(s) 1051, 1063, 1235, 1291, 1470, 2192, 2433, 2741, 2952
BveI ACCTGC 3 cut(s) 1855, 3029, 3334
Cac8I GCNNGC 3 cut(s) 187, 2004, 3492
CfoI GCGC 7 cut(s) 213, 246, 315, 712, 2004, 2006, 2368
Cfr10I RCCGGY 4 cut(s) 155, 185, 551, 1593
Cfr13I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
ClaI ATCGAT 3 cut(s) 342, 429, 1947
CseI GACGC 1 cut(s) 2930
CspAI ACCGGT 1 cut(s) 551
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
DdeI CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 3331, 3376, 3438
DinI GGCGCC 1 cut(s) 314
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 5 cut(s) 172, 183, 229, 1773, 3318
Eam1104I CTCTTC 3 cut(s) 807, 1500, 3252
EarI CTCTTC 3 cut(s) 807, 1500, 3252
Eco130I CCWWGG 3 cut(s) 453, 873, 2066
Eco24I GRGCYC 1 cut(s) 2772
Eco31I GGTCTC 1 cut(s) 1127
Eco32I GATATC 2 cut(s) 307, 2671
Eco47I GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
Eco47III AGCGCT 1 cut(s) 711
Eco57I CTGAAG 5 cut(s) 636, 1174, 1259, 2529, 2765
Eco88I CYCGRG 3 cut(s) 119, 883, 3048
EcoO109I RGGNCCY 2 cut(s) 511, 2440
EcoRI GAATTC 1 cut(s) 3380
EcoRII CCWGG 1 cut(s) 1759
EcoRV GATATC 2 cut(s) 307, 2671
EcoT14I CCWWGG 3 cut(s) 453, 873, 2066
EcoT22I ATGCAT 2 cut(s) 1281, 2080
EcoT38I GRGCYC 1 cut(s) 2772
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
ErhI CCWWGG 3 cut(s) 453, 873, 2066
FalI AAGNNNNNCTT 2 cut(s) 2871, 2903
FaqI GGGAC 4 cut(s) 55, 126, 272, 3230
FauI CCCGC 1 cut(s) 3499
FauNDI CATATG 2 cut(s) 916, 2808
FbaI TGATCA 2 cut(s) 1606, 2146
Fnu4HI GCNGC 4 cut(s) 247, 2500, 2795, 2958
FriOI GRGCYC 1 cut(s) 2772
Fsp4HI GCNGC 4 cut(s) 247, 2500, 2795, 2958
FspBI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
GlaI GCGC 7 cut(s) 212, 245, 314, 711, 2003, 2005, 2367
GluI GCNGC 4 cut(s) 247, 2500, 2795, 2958
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 2720
HaeII RGCGCY 3 cut(s) 316, 713, 2369
HaeIII GGCC 8 cut(s) 159, 174, 185, 231, 270, 513, 1775, 3320
HapII CCGG 9 cut(s) 156, 186, 316, 552, 939, 1348, 1594, 2874, 3017
HgaI GACGC 1 cut(s) 2930
HhaI GCGC 7 cut(s) 213, 246, 315, 712, 2004, 2006, 2368
Hin1I GRCGYC 1 cut(s) 313
Hin6I GCGC 7 cut(s) 211, 244, 313, 710, 2002, 2004, 2366
HinP1I GCGC 7 cut(s) 211, 244, 313, 710, 2002, 2004, 2366
HincII GTYRAC 2 cut(s) 907, 3061
HindII GTYRAC 2 cut(s) 907, 3061
HindIII AAGCTT 1 cut(s) 1562
HpaII CCGG 9 cut(s) 156, 186, 316, 552, 939, 1348, 1594, 2874, 3017
HphI GGTGA 9 cut(s) 97, 415, 656, 1094, 1532, 1583, 2357, 2999, 3010
Hpy166II GTNNAC 6 cut(s) 690, 772, 907, 1063, 2656, 3061
Hpy188I TCNGA 9 cut(s) 438, 498, 652, 1000, 1791, 1917, 3289, 3346, 3379
Hpy8I GTNNAC 6 cut(s) 690, 772, 907, 1063, 2656, 3061
Hpy99I CGWCG 4 cut(s) 140, 281, 779, 1659
HpyCH4III ACNGT 7 cut(s) 140, 936, 1046, 1067, 2260, 3469, 3532
HpyCH4IV ACGT 9 cut(s) 126, 237, 774, 1657, 2017, 2533, 2761, 3013, 3401
HpyF10VI GCNNNNNNNGC 7 cut(s) 252, 261, 555, 1561, 3044, 3326, 3356
HpyF3I CTNAG 8 cut(s) 495, 1887, 2197, 2436, 2624, 3331, 3376, 3438
HpySE526I ACGT 9 cut(s) 126, 237, 774, 1657, 2017, 2533, 2761, 3013, 3401
Hsp92I GRCGYC 1 cut(s) 313
HspAI GCGC 7 cut(s) 211, 244, 313, 710, 2002, 2004, 2366
KasI GGCGCC 1 cut(s) 312
Kpn2I TCCGGA 2 cut(s) 2873, 3016
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 2 cut(s) 1606, 2146
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 5 cut(s) 366, 1075, 1354, 1958, 2419
Lsp1109I GCAGC 2 cut(s) 2486, 2969
LweI GCATC 7 cut(s) 1154, 1954, 2962, 3025, 3184, 3219, 3337
MaeI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
MaeII ACGT 9 cut(s) 126, 237, 774, 1657, 2017, 2533, 2761, 3013, 3401
MaeIII GTNAC 5 cut(s) 238, 373, 1033, 2841, 2881
MfeI CAATTG 5 cut(s) 95, 1435, 1935, 2142, 3351
MflI RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
MhlI GDGCHC 4 cut(s) 1072, 1490, 2772, 3492
MlsI TGGCCA 1 cut(s) 3320
MluNI TGGCCA 1 cut(s) 3320
Mly113I GGCGCC 1 cut(s) 313
MlyI GAGTC 8 cut(s) 85, 1477, 1786, 1869, 2218, 3032, 3101, 3122
MmeI TCCRAC 2 cut(s) 906, 2493
Mox20I TGGCCA 1 cut(s) 3320
Mph1103I ATGCAT 2 cut(s) 1281, 2080
MroI TCCGGA 2 cut(s) 2873, 3016
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 3 cut(s) 324, 2487, 2853
MscI TGGCCA 1 cut(s) 3320
MslI CAYNNNNRTG 2 cut(s) 1814, 2649
Msp20I TGGCCA 1 cut(s) 3320
MspA1I CMGCKG 1 cut(s) 3494
MspI CCGG 9 cut(s) 156, 186, 316, 552, 939, 1348, 1594, 2874, 3017
MspR9I CCNGG 4 cut(s) 317, 940, 1349, 1761
MunI CAATTG 5 cut(s) 95, 1435, 1935, 2142, 3351
Mva1269I GAATGC 4 cut(s) 1279, 2104, 2487, 2853
MvaI CCWGG 1 cut(s) 1761
MvnI CGCG 5 cut(s) 211, 244, 412, 2004, 2006
MwoI GCNNNNNNNGC 7 cut(s) 252, 261, 555, 1561, 3044, 3326, 3356
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 313
NciI CCSGG 3 cut(s) 317, 940, 1349
NcoI CCATGG 2 cut(s) 453, 2066
NdeI CATATG 2 cut(s) 916, 2808
NgoMIV GCCGGC 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 238, 2841
NsiI ATGCAT 2 cut(s) 1281, 2080
NspI RCATGY 2 cut(s) 118, 3242
NspV TTCGAA 1 cut(s) 572
PaeR7I CTCGAG 1 cut(s) 3048
PaqCI CACCTGC 1 cut(s) 3029
PauI GCGCGC 1 cut(s) 2002
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 234, 273, 780
PctI GAATGC 4 cut(s) 1279, 2104, 2487, 2853
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 3 cut(s) 324, 2487, 2853
PfeI GAWTC 9 cut(s) 55, 647, 785, 848, 1428, 1479, 1541, 1858, 3066
PflMI CCANNNNNTGG 2 cut(s) 181, 641
PfoI TCCNGGA 1 cut(s) 1759
PinAI ACCGGT 1 cut(s) 551
PkrI GCNGC 4 cut(s) 248, 2501, 2796, 2959
PleI GAGTC 8 cut(s) 85, 1476, 1786, 1869, 2217, 3031, 3101, 3122
PluTI GGCGCC 1 cut(s) 316
PpsI GAGTC 8 cut(s) 85, 1476, 1786, 1869, 2217, 3031, 3101, 3122
Ppu21I YACGTR 1 cut(s) 2762
PpuMI RGGWCCY 1 cut(s) 2440
PsiI TTATAA 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 2440
Psp6I CCWGG 1 cut(s) 1759
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 1 cut(s) 1759
PspPI GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
PspPPI RGGWCCY 1 cut(s) 2440
PstI CTGCAG 1 cut(s) 2959
PsuI RGATCY 5 cut(s) 839, 878, 1301, 2190, 3162
PteI GCGCGC 1 cut(s) 2002
RseI CAYNNNNRTG 2 cut(s) 1814, 2649
SapI GCTCTTC 1 cut(s) 807
SatI GCNGC 4 cut(s) 247, 2500, 2795, 2958
Sau96I GGNCC 6 cut(s) 69, 140, 511, 690, 1634, 2440
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 8 cut(s) 85, 1477, 1786, 1869, 2218, 3032, 3101, 3122
ScrFI CCNGG 4 cut(s) 317, 940, 1349, 1761
SduI GDGCHC 4 cut(s) 1072, 1490, 2772, 3492
SfaNI GCATC 7 cut(s) 1154, 1954, 2962, 3025, 3184, 3219, 3337
SfcI CTRYAG 2 cut(s) 2955, 2976
SfoI GGCGCC 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 3048
SfuI TTCGAA 1 cut(s) 572
SinI GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
SlaI CTCGAG 1 cut(s) 3048
SmiMI CAYNNNNRTG 2 cut(s) 1814, 2649
SmlI CTYRAG 2 cut(s) 2111, 3048
SmoI CTYRAG 2 cut(s) 2111, 3048
SsiI CCGC 8 cut(s) 247, 566, 1022, 1967, 2006, 2458, 2794, 3492
SspDI GGCGCC 1 cut(s) 312
SspI AATATT 2 cut(s) 1603, 2587
SspMI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
StyD4I CCNGG 4 cut(s) 315, 938, 1347, 1759
StyI CCWWGG 3 cut(s) 453, 873, 2066
TaaI ACNGT 7 cut(s) 140, 936, 1046, 1067, 2260, 3469, 3532
TaiI ACGT 9 cut(s) 129, 240, 777, 1660, 2020, 2536, 2764, 3016, 3404
TatI WGTACW 2 cut(s) 348, 756
TauI GCSGC 2 cut(s) 249, 2797
TfiI GAWTC 9 cut(s) 55, 647, 785, 848, 1428, 1479, 1541, 1858, 3066
TscAI CASTG 9 cut(s) 1051, 1070, 1242, 1298, 1470, 2192, 2440, 2748, 2959
TseFI GTSAC 2 cut(s) 238, 2841
TseI GCWGC 2 cut(s) 2499, 2957
Tsp45I GTSAC 2 cut(s) 238, 2841
TspGWI ACGGA 2 cut(s) 675, 2216
TspRI CASTG 9 cut(s) 1051, 1070, 1242, 1298, 1470, 2192, 2440, 2748, 2959
Van91I CCANNNNNTGG 2 cut(s) 181, 641
VpaK11BI GGWCC 5 cut(s) 69, 140, 690, 1634, 2440
XapI RAATTY 7 cut(s) 574, 727, 862, 1369, 1765, 3380, 3427
XbaI TCTAGA 2 cut(s) 2284, 3094
XceI RCATGY 2 cut(s) 118, 3242
XhoI CTCGAG 1 cut(s) 3048
XmnI GAANNNNTTC 3 cut(s) 324, 2487, 2853
XspI CTAG 6 cut(s) 699, 1626, 2285, 2798, 2858, 3095
ZrmI AGTACT 1 cut(s) 758
Zsp2I ATGCAT 2 cut(s) 1281, 2080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.