Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009542

Physical Location & Seq

Genomic Coordinates Forward (+)

39517342 .. 39517894

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCGTTGGGATGTTGGAAAAATTAAGCAGTGGTTCTCACCAGCAGACCGAGATCTAATACTAAGCATTCCACTTAGTAGAAGAGCCCCAAGGGATAGGTTGGTTTGGCATTTTAATAACACAGGTTTCTTCATTACAGAGAGTGCATATTATGTTGCAAGAGACATGGCCTTGGGTCTGGTACTTGCTCCCCCACTAGCCCCAGATGTATATGCTAAATTATGGTCAGCTATATGGAACGCCAAAGTCCCAAACAAGTTGGGGCCGAAGATAACATGCATGTCTTTCTTAGATGTAATTATGCCTAAGAAGGTGGGCAGTAACTGCTATCCCTCTACCACCAACAAACATTACGAAGTTGAAAGATTGGCTACTCCACCTAGTGGACAGTGTAGGAAAGGAGGCTTTTACAAAGGTCATGATGCTAATTTGGGGCGTATGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004822 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006428 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051020 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

9.57

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10320
fragaria_vesca	FvH4_4g11470
malus_domestica	MD04G1037200.v1.1 MD09G1065200.v1.1
prunus_persica	Prupe.1G186600_v2.0.a1 Prupe.1G186600_v2.0.a1
pyrus_communis	pycom04g03030 pycom111g05510
rosa_chinensis	RchiOBHm_Chr4g0408181
rosa_laevigata	RLG00000008666 RLG00000035346
rosa_multiflora	Rmu_ssc0000039.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020510 Rroxscaffold_5G00352680
rosa_rugosa	Rorug04G0083900 Rorug04G0084000 Rorug05G0328300
rosa_samantha	Rh4AG148700 Rh4BG145500 Rh4CG155200 Rh4DG142000
rosa_wichuraiana	Rw4G012140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	324
AoxI	GGCC	2 cut(s)	168, 263
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	197, 381
BglII	AGATCT	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	89, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	89, 171
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	383
BshFI	GGCC	2 cut(s)	170, 265
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	170, 265
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	170, 265
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	89, 171
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	2 cut(s)	89, 171
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstDEI	CTNAG	4 cut(s)	62, 74, 289, 306
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	279, 283
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	170, 265
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	35, 395
CaiI	CAGNNNCTG	1 cut(s)	324
CciI	TCATGA	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	4 cut(s)	166, 276, 280, 419
CviJI	RGCY	7 cut(s)	86, 170, 200, 230, 265, 371, 405
CviKI_1	RGCY	7 cut(s)	86, 170, 200, 230, 265, 371, 405
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	62, 74, 289, 306
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	89, 171
Eco24I	GRGCYC	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	89, 171
EcoT22I	ATGCAT	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	89, 171
FaeI	CATG	4 cut(s)	169, 279, 283, 422
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	4 cut(s)	165, 275, 279, 418
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	197, 381
HaeIII	GGCC	2 cut(s)	170, 265
Hin1II	CATG	4 cut(s)	169, 279, 283, 422
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4V	TGCA	3 cut(s)	146, 158, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	4 cut(s)	62, 74, 289, 306
Hsp92II	CATG	4 cut(s)	169, 279, 283, 422
Kzo9I	GATC	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	54, 108, 164, 216
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	197, 381
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	93, 121, 280
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	4 cut(s)	21, 218, 297, 427
MnlI	CCTC	2 cut(s)	343, 395
Mph1103I	ATGCAT	1 cut(s)	281
MseI	TTAA	2 cut(s)	24, 114
Mva1269I	GAATGC	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	169, 279, 283, 422
NlaIV	GGNNCC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	281
NspI	RCATGY	2 cut(s)	279, 283
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	76
PctI	GAATGC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	24, 114
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	6 cut(s)	101, 127, 232, 315, 382, 418
SfaNI	GCATC	1 cut(s)	412
Sse9I	AATT	4 cut(s)	21, 218, 297, 427
SspMI	CTAG	2 cut(s)	197, 381
StyI	CCWWGG	2 cut(s)	89, 171
TaaI	ACNGT	1 cut(s)	390
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	21, 218, 297, 427
Tru1I	TTAA	2 cut(s)	24, 114
Tru9I	TTAA	2 cut(s)	24, 114
TscAI	CASTG	2 cut(s)	35, 395
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	35, 395
Van91I	CCANNNNNTGG	1 cut(s)	383
XceI	RCATGY	2 cut(s)	279, 283
XspI	CTAG	2 cut(s)	197, 381
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.