RchiOBHm_Chr4g0411251

Phosphoglucan, water dikinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
35019802 .. 35025504
5703 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38207

Sequence Viewer

Length: 1494 bp
ATGGAATTAGTCCTTGCCGAAAAACTTGAATCCATCAAAGAATCCATTGATGATAAAGGCCGTTCAGCTCTTACATTGTTCTTTGAGTGCAAAAAGGGTTTGGATGCTTCAGCAGAATCAAGTAAAGTTCTGGGATCTGATTTGTTGTTCAAGACCATGCAATCCTTGAGTGCTCCGAGAGAAATAATTGCGAAGGGTCTTGAAAGTGGCCTTAGAAATGATGCCTCTGATGCTGCAATAGCTATGCTCCAAAAGTGGCGTCTTTGCGAGATTGGACTTGAGGACCATTCATTCATTCTTCTAAGCAGATTCGCTAATGAGCTTGAAGCTATGGGAGGGGCTCATTGGTTGGCACAAGATGCGAAATCAAAGGATCTAAGCTCTTGGAATGATCCACTTGGTGCCCTTATAGTTGGTGTTCATCAGCTAAGGTTATCTCGTTGGAAGCCTGAAGAATGTGCTGCTATTGAAAACGAGCTCCTTGCCTGGAAATCAAGAGGTCTTTCTGAAACAGAAGCTTGCTTCCAGGGCCCAATCATCTTACAACCTTCCTCCTGTTTTATTCATGAAGCGAGTGAAGATGGCAAAATAATCTGGGGATTAGGGCATAAAGCTACTCTCGATAGAGCCAGGAGGTTAACTGAAGAATATTCTGAAGCACTTCTTCAAATATTTCCCCAAAATGTCCAGGTATTAGGAAAAGCTTTTGGAATACCTGAAAACAGTGTGAGGACATACGCTGAAGCTGAAATTCGTGCTGGTGTTGATGATATAGAGACACTATCGTTGTCTGACTTTCGACCTACAAATGCTATGCAGTTTAGAACTACCATTGCTTCTCTACGTTGGGATGTTATTGTGCCGGGAGCTGCTATGGGAACATTAGTTCAGGTTGAGAGGATTGTCCCTGGATCAATACCATCAACTGTAGAGGGACCTGTTGTTCTCGTTGTCAACAAAGCTGATGGAGATGAAGAGGAGAAGGTTGTGTTCGTGACATGTGAAGACGATGACAAAGTTGCTGATATACAAAAACATAAGGAAAAATATGTGAAGGGGGTATCTGCCGGTGGAGTTTTACTACTTGCTGATGCAGAAGCACTGAATTCAGGTGCAAAAGCCGCTGCTTGTGGTCATTTAGCTTCTTTGGCAAAAGCATCTGATAAAGTTTTTAGTGACCAAGGGGTACCAGCTTCCTTTAATGTCCCTGCTGGAGCAGTGATACCATTTGGCTCTATGGAACTGGCATTAGAGAAAAGCAAATCCATTGAATCATTCACGTCCTTTCTAAATAAGATAGAAACATTGAAGCCGGAAAGTGGAGAACTTGACCAAGTATGTGGTCAGCTTCAGGAACTGATCTCTTCTCTACAGCCCTCCAAAGATATCATTGATAGAATAGCTAAAATATTTCCAGGAAATGCACGGCTAATTGTTCGTTCAAGTGCTAATGTTGAAGACTTGGCTGGAATGTCGGCTGCTGGACTACAATGA

Protein Analysis

497

Amino Acids

53.65

Weight (kDa)

4.95

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GWD1_pHisD PF22973 283 - 326 1.2e-07 Alpha-glucan water dikinase, phosphohistidine-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1186
AccB1I GGYRCC 2 cut(s) 401, 1186
AciI CCGC 1 cut(s) 1122
AclWI GGATC 4 cut(s) 142, 381, 386, 919
AcsI RAATTY 2 cut(s) 750, 1105
AcuI CTGAAG 6 cut(s) 93, 471, 663, 675, 762, 1334
AcyI GRCGYC 1 cut(s) 259
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 1 cut(s) 1188
AfiI CCNNNNNNNGG 1 cut(s) 1319
AflIII ACRYGT 1 cut(s) 998
AjiI CACGTC 1 cut(s) 1281
AjnI CCWGG 6 cut(s) 485, 525, 629, 687, 907, 1414
AloI GAACNNNNNNTCC 4 cut(s) 870, 902, 927, 959
Alw21I GWGCWC 2 cut(s) 175, 480
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 4 cut(s) 142, 381, 386, 919
AlwNI CAGNNNCTG 1 cut(s) 1357
AoxI GGCC 3 cut(s) 58, 208, 529
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 5 cut(s) 233, 461, 869, 1124, 1478
ApoI RAATTY 2 cut(s) 750, 1105
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
Asp700I GAANNNNTTC 1 cut(s) 660
Asp718I GGTACC 1 cut(s) 1186
AspS9I GGNCC 4 cut(s) 283, 529, 530, 935
AsuC2I CCSGG 1 cut(s) 864
AvaII GGWCC 2 cut(s) 283, 935
BaeGI GKGCMC 2 cut(s) 406, 533
BanI GGYRCC 2 cut(s) 401, 1186
BanII GRGCYC 3 cut(s) 343, 480, 533
BbsI GAAGAC 2 cut(s) 1011, 1464
Bbv12I GWGCWC 2 cut(s) 175, 480
BbvI GCAGC 5 cut(s) 220, 448, 856, 1111, 1465
BccI CCATC 4 cut(s) 41, 575, 928, 959
BceAI ACGGC 2 cut(s) 45, 1442
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 6 cut(s) 487, 527, 631, 689, 909, 1416
BcnI CCSGG 1 cut(s) 864
BcoDI GTCTC 1 cut(s) 770
BfmI CTRYAG 2 cut(s) 927, 1370
BisI GCNGC 6 cut(s) 234, 462, 870, 1122, 1125, 1479
BlsI GCNGC 6 cut(s) 235, 463, 871, 1123, 1126, 1480
Bme1390I CCNGG 7 cut(s) 487, 527, 631, 689, 864, 909, 1416
Bme18I GGWCC 2 cut(s) 283, 935
BmgBI CACGTC 1 cut(s) 1281
BmgT120I GGNCC 4 cut(s) 283, 529, 530, 935
BmiI GGNNCC 4 cut(s) 403, 531, 936, 1188
BmrFI CCNGG 7 cut(s) 487, 527, 631, 689, 864, 909, 1416
BmsI GCATC 6 cut(s) 94, 211, 220, 349, 1081, 1166
BpiI GAAGAC 2 cut(s) 1011, 1464
BpmI CTGGAG 1 cut(s) 1233
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 2 cut(s) 187, 299
BpuMI CCSGG 1 cut(s) 864
BsaHI GRCGYC 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 526, 907, 1180
Bsc4I CCNNNNNNNGG 1 cut(s) 1319
Bse118I RCCGGY 1 cut(s) 1067
Bse1I ACTGG 1 cut(s) 1248
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 6 cut(s) 487, 527, 631, 689, 909, 1416
BseDI CCNNGG 3 cut(s) 526, 907, 1180
BseGI GGATG 2 cut(s) 109, 856
BseLI CCNNNNNNNGG 1 cut(s) 1319
BseMI GCAATG 1 cut(s) 831
BseNI ACTGG 1 cut(s) 1248
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 2 cut(s) 406, 533
BseXI GCAGC 5 cut(s) 220, 448, 856, 1111, 1465
BshFI GGCC 3 cut(s) 60, 210, 531
BshNI GGYRCC 2 cut(s) 401, 1186
BsiHKAI GWGCWC 2 cut(s) 175, 480
BsiSI CCGG 3 cut(s) 863, 1068, 1313
BslFI GGGAC 3 cut(s) 890, 948, 1190
BslI CCNNNNNNNGG 1 cut(s) 1319
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 3 cut(s) 890, 948, 1190
BsnI GGCC 3 cut(s) 60, 210, 531
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 5 cut(s) 175, 343, 406, 480, 533
Bsp143I GATC 5 cut(s) 134, 373, 391, 911, 1359
BspACI CCGC 1 cut(s) 1122
BspANI GGCC 3 cut(s) 60, 210, 531
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 4 cut(s) 403, 531, 936, 1188
BspPI GGATC 4 cut(s) 142, 381, 386, 919
BspT107I GGYRCC 2 cut(s) 401, 1186
BsrDI GCAATG 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 1067
BsrI ACTGG 1 cut(s) 1248
BssAI RCCGGY 1 cut(s) 1067
BssECI CCNNGG 3 cut(s) 526, 907, 1180
BssMI GATC 5 cut(s) 134, 373, 391, 911, 1359
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 1180
Bst2UI CCWGG 6 cut(s) 487, 527, 631, 689, 909, 1416
Bst4CI ACNGT 2 cut(s) 725, 928
Bst6I CTCTTC 2 cut(s) 969, 1369
BstACI GRCGYC 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 4 cut(s) 212, 302, 377, 428
BstF5I GGATG 2 cut(s) 109, 856
BstKTI GATC 5 cut(s) 137, 376, 394, 914, 1362
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 5 cut(s) 134, 373, 391, 911, 1359
BstMWI GCNNNNNNNGC 6 cut(s) 230, 239, 359, 528, 1121, 1148
BstNI CCWGG 6 cut(s) 487, 527, 631, 689, 909, 1416
BstNSI RCATGY 1 cut(s) 1002
BstSCI CCNGG 7 cut(s) 485, 525, 629, 687, 862, 907, 1414
BstSFI CTRYAG 2 cut(s) 927, 1370
BstSLI GKGCMC 2 cut(s) 406, 533
BstV1I GCAGC 5 cut(s) 220, 448, 856, 1111, 1465
BstV2I GAAGAC 2 cut(s) 1011, 1464
BstX2I RGATCY 2 cut(s) 134, 373
BstXI CCANNNNNNTGG 1 cut(s) 1340
BstYI RGATCY 2 cut(s) 134, 373
BsuRI GGCC 3 cut(s) 60, 210, 531
BtrI CACGTC 1 cut(s) 1281
BtsCI GGATG 2 cut(s) 109, 856
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 3 cut(s) 730, 1100, 1224
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 1 cut(s) 1357
CciI TCATGA 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 1067
Cfr13I GGNCC 4 cut(s) 283, 529, 530, 935
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 1187
CviAII CATG 3 cut(s) 157, 566, 999
CviQI GTAC 1 cut(s) 1187
DdeI CTNAG 4 cut(s) 212, 302, 377, 428
DpnI GATC 5 cut(s) 136, 375, 393, 913, 1361
DpnII GATC 5 cut(s) 134, 373, 391, 911, 1359
DraIII CACNNNGTG 1 cut(s) 401
Eam1104I CTCTTC 2 cut(s) 969, 1369
EarI CTCTTC 2 cut(s) 969, 1369
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 1180
Eco24I GRGCYC 3 cut(s) 343, 480, 533
Eco32I GATATC 1 cut(s) 1387
Eco47I GGWCC 2 cut(s) 283, 935
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 6 cut(s) 93, 471, 663, 675, 762, 1334
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 2 cut(s) 529, 935
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 6 cut(s) 485, 525, 629, 687, 907, 1414
EcoRV GATATC 1 cut(s) 1387
EcoT14I CCWWGG 1 cut(s) 1180
EcoT38I GRGCYC 3 cut(s) 343, 480, 533
ErhI CCWWGG 1 cut(s) 1180
FaeI CATG 3 cut(s) 160, 569, 1002
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 3 cut(s) 890, 948, 1190
FatI CATG 3 cut(s) 156, 565, 998
Fnu4HI GCNGC 6 cut(s) 234, 462, 870, 1122, 1125, 1479
FokI GGATG 2 cut(s) 116, 863
FriOI GRGCYC 3 cut(s) 343, 480, 533
Fsp4HI GCNGC 6 cut(s) 234, 462, 870, 1122, 1125, 1479
GluI GCNGC 6 cut(s) 234, 462, 870, 1122, 1125, 1479
GsuI CTGGAG 1 cut(s) 1233
HaeIII GGCC 3 cut(s) 60, 210, 531
HapII CCGG 3 cut(s) 863, 1068, 1313
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 3 cut(s) 160, 569, 1002
HincII GTYRAC 2 cut(s) 639, 955
HindII GTYRAC 2 cut(s) 639, 955
HindIII AAGCTT 2 cut(s) 516, 702
HinfI GANTC 5 cut(s) 29, 41, 116, 309, 1271
HpaI GTTAAC 1 cut(s) 639
HpaII CCGG 3 cut(s) 863, 1068, 1313
Hpy166II GTNNAC 2 cut(s) 639, 955
Hpy188I TCNGA 7 cut(s) 139, 177, 229, 508, 655, 793, 1162
Hpy188III TCNNGA 7 cut(s) 151, 200, 495, 566, 620, 994, 1352
Hpy8I GTNNAC 2 cut(s) 639, 955
HpyAV CCTTC 4 cut(s) 187, 558, 976, 1048
HpyCH4III ACNGT 2 cut(s) 725, 928
HpyCH4IV ACGT 2 cut(s) 844, 1280
HpyCH4V TGCA 7 cut(s) 90, 160, 236, 817, 1094, 1115, 1424
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 239, 359, 528, 1121, 1148
HpyF3I CTNAG 4 cut(s) 212, 302, 377, 428
HpySE526I ACGT 2 cut(s) 844, 1280
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 3 cut(s) 160, 569, 1002
KpnI GGTACC 1 cut(s) 1190
KspAI GTTAAC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 134, 373, 391, 911, 1359
LmnI GCTCC 5 cut(s) 178, 252, 483, 866, 1214
Lsp1109I GCAGC 5 cut(s) 220, 448, 856, 1111, 1465
LweI GCATC 6 cut(s) 94, 211, 220, 349, 1081, 1166
MaeII ACGT 2 cut(s) 844, 1280
MaeIII GTNAC 2 cut(s) 994, 1175
MalI GATC 5 cut(s) 136, 375, 393, 913, 1361
MboI GATC 5 cut(s) 134, 373, 391, 911, 1359
MboII GAAGA 9 cut(s) 290, 464, 590, 656, 656, 986, 1016, 1356, 1469
MflI RGATCY 2 cut(s) 134, 373
MhlI GDGCHC 5 cut(s) 175, 343, 406, 480, 533
MluCI AATT 5 cut(s) 5, 186, 750, 1105, 1431
MmeI TCCRAC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 2 cut(s) 638, 1200
MspA1I CMGCKG 1 cut(s) 1124
MspI CCGG 3 cut(s) 863, 1068, 1313
MspR9I CCNGG 7 cut(s) 487, 527, 631, 689, 864, 909, 1416
MvaI CCWGG 6 cut(s) 487, 527, 631, 689, 909, 1416
MwoI GCNNNNNNNGC 6 cut(s) 230, 239, 359, 528, 1121, 1148
NciI CCSGG 1 cut(s) 864
NdeII GATC 5 cut(s) 134, 373, 391, 911, 1359
NlaIII CATG 3 cut(s) 160, 569, 1002
NlaIV GGNNCC 4 cut(s) 403, 531, 936, 1188
NmuCI GTSAC 2 cut(s) 994, 1175
NspI RCATGY 1 cut(s) 1002
PagI TCATGA 1 cut(s) 565
PciI ACATGT 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 5 cut(s) 29, 41, 116, 309, 1271
PfoI TCCNGGA 1 cut(s) 1414
PkrI GCNGC 6 cut(s) 235, 463, 871, 1123, 1126, 1480
PpuMI RGGWCCY 1 cut(s) 935
PscI ACATGT 1 cut(s) 998
Psp124BI GAGCTC 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 6 cut(s) 485, 525, 629, 687, 907, 1414
PspGI CCWGG 6 cut(s) 485, 525, 629, 687, 907, 1414
PspN4I GGNNCC 4 cut(s) 403, 531, 936, 1188
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 4 cut(s) 283, 529, 530, 935
PspPPI RGGWCCY 1 cut(s) 935
PstNI CAGNNNCTG 1 cut(s) 1357
PsuI RGATCY 2 cut(s) 134, 373
RsaI GTAC 1 cut(s) 1188
RsaNI GTAC 1 cut(s) 1187
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 638, 1200
SatI GCNGC 6 cut(s) 234, 462, 870, 1122, 1125, 1479
Sau3AI GATC 5 cut(s) 134, 373, 391, 911, 1359
Sau96I GGNCC 4 cut(s) 283, 529, 530, 935
ScrFI CCNGG 7 cut(s) 487, 527, 631, 689, 864, 909, 1416
SduI GDGCHC 5 cut(s) 175, 343, 406, 480, 533
SfaNI GCATC 6 cut(s) 94, 211, 220, 349, 1081, 1166
SfcI CTRYAG 2 cut(s) 927, 1370
SinI GGWCC 2 cut(s) 283, 935
SmlI CTYRAG 2 cut(s) 166, 278
SmoI CTYRAG 2 cut(s) 166, 278
Sse9I AATT 5 cut(s) 5, 186, 750, 1105, 1431
SsiI CCGC 1 cut(s) 1122
SspI AATATT 3 cut(s) 650, 672, 1410
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 7 cut(s) 485, 525, 629, 687, 862, 907, 1414
StyI CCWWGG 1 cut(s) 1180
TaaI ACNGT 2 cut(s) 725, 928
TaiI ACGT 2 cut(s) 847, 1283
TaqI TCGA 2 cut(s) 621, 799
TasI AATT 5 cut(s) 5, 186, 750, 1105, 1431
TauI GCSGC 1 cut(s) 1124
TfiI GAWTC 5 cut(s) 29, 41, 116, 309, 1271
Tru1I TTAA 2 cut(s) 638, 1200
Tru9I TTAA 2 cut(s) 638, 1200
TscAI CASTG 3 cut(s) 730, 1107, 1224
TseFI GTSAC 2 cut(s) 994, 1175
TseI GCWGC 5 cut(s) 233, 461, 869, 1124, 1478
Tsp45I GTSAC 2 cut(s) 994, 1175
TspDTI ATGAA 6 cut(s) 279, 283, 410, 554, 582, 987
TspRI CASTG 3 cut(s) 730, 1107, 1224
VpaK11BI GGWCC 2 cut(s) 283, 935
XapI RAATTY 2 cut(s) 750, 1105
XceI RCATGY 1 cut(s) 1002
XmnI GAANNNNTTC 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.