Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0008467

Physical Location & Seq

Genomic Coordinates Forward (+)

234688 .. 246878

Gene Structure 12191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3984 bp

atggaggaggagaagaggacattaactaaatgggagtgtccaccacgggggagactgaaaattaatattgatggggcatatagggttgattgtggtgttggtggcattggagtggtggtcagagatgagctgggcacggtgcagtggattagtctagctttcgccgcaatgtcagtgcaggtgtcctggtgctgggataccgctgcatgggtgtggaagggacaaaggcaatattgggacccggacaatcggagatctactatcggggattgcaccctccacgtggcatcactatcatttattacaaaacctcatcacctcacttccgctgccacttcctccctcaattcttcatggactgatctccgcgcttccaaccccaaaccagagagagagagagaaatggattgcgtgccttcgctgcacacctccgcatcttcttcttcgtcgcagttccttcgtcacaagcaattcagattcctccacaatcaccttcaatgccgtcgaagcgttgcggcactcggccgtagaacaagtttccgtcctctccatcacaaatcaaacaatcttcgcattctctgcggcgtcggtgtttctcctcctcaatccacagaggagcagaaggagaccaagatgaagtccaagtcaaagtctgggcgcggcaaggtttggcttgatattaggttggatcaccaagttgaatttggagagagtgttgcggttttgggatcatcaaaggagttagggtcgtggaagaagaaggtgcctctgaattggacagagagtggatgggtatgcaaattggagttcaaggggggtgagtccattgagtataagtttgtaactgttggggctgacaagagtatgctttgggaaggtgatgataaccgggttttgaaacttcccaacggaggaagctttgggatggtttgccactggaatgcaactggggagaatgtagatctattcccattggacaaggaggatggtgttgaatataatgggtcttctgctgcccaaactgctaatacaactgctagttctccagatgtggagactagtccttttgttggtcaatggaaagggaatgccatctcatttatgcggtcaaatgagcatcgggatcgtgaatcaggaagaaattgggacacttcaggtcttgaagggttgtctcttaagttggttgaaggtgatcgaaatgccaggaattggtggcaaaagcttgaagttgtacgtgatatactacttgaaagttcacaaagtgaggagcggttggatgctctcataaattcttccatttatttgaagtggataaacacaggccagattccttgctttgaaggtggaggtcatcatcgaccaaaccggcatgctgagatttccagggttatatttcgagaactggaaagaatttcctgtaggaaagatacttcaccccaggaagtacttgttatccgcaagattcatccatgtctgccatcgttcaaagcagaatttactgcatctgtccccctaacacgaatcagagacattgctcatcggaatgatatccctcatgacctcaagcaagaaattaagcacacaatacaaaacaaacttcaccgcaatgctggtcctgaagatctagttgctacagaagccatgctagcaagaataaccaagaaccctggacaatatagtgaagcatttgtggagcagttcaagatattccatcatgagctcaaagactttttcaatgctggaagccttgctgaacaacttgaatccatcaaagattccatcgatgataaaggccgttcagctcttacattgtttttggagtgcaaaaagggtttggatgcttcagcagaatcaagtaaagttttggggtctgatttgttgttcaagaccatgcaatccttgagtgctctgagagatataattgcaaagggtcttgaaagtggccttagaaatgatgcttctgatgctgctatagctatgcgtcaaaagtggcgtctttgcgagattggacttgaggactattcattcatccttctaagcagattcgctaatgagcttgaagctatgggaggggctcattggctggcacaagatgtgaaatcaaaggatgtaagctcttggaatgatccacttggtgctcttgtagttggtgttcatcagctaaggttatctggttggaagcctgaagaatgtgcggctattcaaaacgagctccttgcctggaaagcaagaggtctttctcaaatggaagcgagtgaagatggcaaaacaatctggggactacggcataaagctactctcgatagagccaggaggttaactgaagaatattctgaagcacttcttcaaatatttccccaaaatgtccaggtattaggaaaagcttttggaatacctgagaacagtgtaaggacatacgctgaagctgaaattcgcgctggtgtaatatttcaggtttcaaaactctgtaccctgcttttgaaagcagttagaactaccattggttctcagggttgggatgttattgtgccgggagctgctatgggaacattggttcaggttgagaggattgtccccggttcaataccatcaactgttgagggacctgttgttctcgttgtcaacaaagcagatggagatgaagaggtaacagcggctggcagtaacattgtgggagttgttcttctgcaagagcttcctcacttgtctcatcttggtgtcagggctcgacaagagaaggttgtgtttgtgacatgtgaagatgatgacaaagttgctgatatacaaaaactcatgggaaaatatgtgaggttagaagcatcctcgtccagtgttgatatatatccttcaacagaaaacagcaatggcacttttgcagtgaaaaatgtttcaagtgatgttgcaccaaaagttgaatcccgtggaactcctgacccttcctggtctgctgctaaaaccccagaatccaataagggggtatctgccggtggagttttactacttgctgatgcagaagcacggaattcgggtgcaaaagctgctgcttgtggtcgtttagcttctttggcagcagcatctgataaggtttttagtgaccaaggggtaccagcttcctttaatgtccctgctggagcagtgataccatttggctctatggaactggcattagagcaaagcaaatccatggaatcattcaggtcctttctaaatatgatagaaacattgaagccagaaagtggagaacttgaccaagtatgtggtcagctccaggaactgatctcttctctacagccctccaaagatatcattgatagaatagccaaaatatttccaggcaatgcgcggctaattgttcgttcaagtgctaatgttgaggacttagctggaatgtcggctgctggactatatgattcaattcccaatgttagtgtttcaaatccgacagtatttgcaaattctataagcaaagtgtgggcatcactttatactaggagggcagttttgagccgtcgagttgccggtgtacctcagaaggatgctacaatggcaattctggtgcaagaaatgctttcaccagacttatcgtttgtgcttcatacagtcagcccaacagaccaagaccataatttggttgaggctgaaattgcttctggcctcggtgaaactttggcttcaggcaccaggggcacaccctggcgtatatcgtctggaaaatttgatgggaatgtgcgcacattggcatttgctaatttcagtgaggaactacttggtggaggccctgcagacggggaggttatccatttgactgtagactacagcaagaaaccattaactgttgatccagttttccgtcggcagcttggtcagcgcctcggtgcagtgggatttttccttgagcagaagttcggctgcccacaggatgtggaaggatgtgttgttggcaaagacatctttatagtccagacacgtccacagcccctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

1327

Amino Acids

145.75

Weight (kDa)

6.48

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26570 AT5G26570
fragaria_vesca	FvH4_4g12510 FvH4_4g12510
malus_domestica	MD04G1025900.v1.1
prunus_persica	Prupe.1G175200_v2.0.a1
pyrus_communis	pycom04g02200
rosa_chinensis	RchiOBHm_Chr4g0411251 RchiOBHm_Chr4g0411331
rosa_laevigata	RLG00000008365 RLG00000008368
rosa_multiflora	Rmu_sc0000543.1_g000027 Rmu_sc0000543.1_g000049
rosa_roxburghii	Rroxscaffold_5G00355910
rosa_rugosa	Rorug04G0110100
rosa_samantha	Rh4AG167100 Rh4BG163600 Rh4BG164200 Rh4CG178800 Rh4DG161900
rosa_wichuraiana	Rw4G013760 Rw4G013810 Rw4G013910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	169
Acc16I	TGCGCA	1 cut(s)	3731
Acc36I	ACCTGC	1 cut(s)	169
Acc65I	GGTACC	1 cut(s)	3103
AccB1I	GGYRCC	3 cut(s)	763, 3103, 3677
AccB7I	CCANNNNNTGG	3 cut(s)	1209, 3236, 3628
AccBSI	CCGCTC	1 cut(s)	1270
AccI	GTMKAC	1 cut(s)	3810
AccII	CGCG	4 cut(s)	369, 660, 2436, 3343
AclWI	GGATC	5 cut(s)	696, 736, 1131, 2120, 3833
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	8 cut(s)	701, 1288, 1410, 1493, 2430, 3022, 3454, 3713
AcuI	CTGAAG	8 cut(s)	1137, 1638, 1827, 2205, 2343, 2355, 2442, 3657
AcvI	CACGTG	1 cut(s)	283
AcyI	GRCGYC	2 cut(s)	585, 1993
AdeI	CACNNNGTG	2 cut(s)	1262, 2135
AfaI	GTAC	5 cut(s)	1233, 1446, 2470, 3105, 3525
AflII	CTTAAG	1 cut(s)	1175
AflIII	ACRYGT	2 cut(s)	2753, 3965
AhlI	ACTAGT	1 cut(s)	1058
AjiI	CACGTC	1 cut(s)	3968
AloI	GAACNNNNNNTCC	4 cut(s)	2538, 2570, 2595, 2627
Alw21I	GWGCWC	4 cut(s)	1722, 1909, 2140, 2214
Alw26I	GTCTC	6 cut(s)	46, 620, 1049, 1176, 1521, 2712
AlwI	GGATC	5 cut(s)	696, 736, 1131, 2120, 3833
AlwNI	CAGNNNCTG	3 cut(s)	2657, 3077, 3274
AoxI	GGCC	6 cut(s)	523, 1321, 1792, 1942, 3652, 3775
ApoI	RAATTY	8 cut(s)	701, 1288, 1410, 1493, 2430, 3022, 3454, 3713
ArsI	GACNNNNNNTTYG	4 cut(s)	1978, 2010, 3569, 3601
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	2340
Asp718I	GGTACC	1 cut(s)	3103
AspLEI	GCGC	6 cut(s)	371, 660, 2438, 3343, 3732, 3870
AspS9I	GGNCC	5 cut(s)	238, 1613, 2603, 3198, 3776
AsuC2I	CCSGG	4 cut(s)	242, 890, 2532, 2577
AsuNHI	GCTAGC	1 cut(s)	1645
AvaII	GGWCC	4 cut(s)	238, 1613, 2603, 3198
BaeGI	GKGCMC	2 cut(s)	137, 3689
BanI	GGYRCC	3 cut(s)	763, 3103, 3677
BanII	GRGCYC	4 cut(s)	1722, 2077, 2214, 2728
BbrPI	CACGTG	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	999
Bbv12I	GWGCWC	4 cut(s)	1722, 1909, 2140, 2214
BceAI	ACGGC	5 cut(s)	486, 510, 1779, 2300, 3492
BcgI	CGANNNNNNTGC	8 cut(s)	440, 474, 1106, 1140, 2198, 2232, 3006, 3040
BciVI	GTATCC	1 cut(s)	190
BcnI	CCSGG	4 cut(s)	242, 890, 2532, 2577
BcoDI	GTCTC	6 cut(s)	46, 620, 1049, 1176, 1521, 2712
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	6 cut(s)	155, 1038, 1059, 1625, 1646, 3489
BfmI	CTRYAG	7 cut(s)	1417, 1632, 1971, 3287, 3780, 3807, 3814
BfoI	RGCGCY	1 cut(s)	3871
BfrI	CTTAAG	1 cut(s)	1175
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	190
BglII	AGATCT	3 cut(s)	254, 961, 1621
BmcAI	AGTACT	1 cut(s)	1446
Bme18I	GGWCC	4 cut(s)	238, 1613, 2603, 3198
BmgBI	CACGTC	1 cut(s)	3968
BmgT120I	GGNCC	5 cut(s)	238, 1613, 2603, 3198, 3776
BmiI	GGNNCC	6 cut(s)	239, 240, 765, 2604, 3105, 3679
BmrI	ACTGGG	1 cut(s)	957
BmtI	GCTAGC	1 cut(s)	1649
BmuI	ACTGGG	1 cut(s)	957
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	3 cut(s)	1029, 3150, 3251
Bpu10I	CCTNAGC	1 cut(s)	2162
BpuEI	CTTGAG	4 cut(s)	1547, 1921, 2033, 3914
BpuMI	CCSGG	4 cut(s)	242, 890, 2532, 2577
Bsa29I	ATCGAT	1 cut(s)	1782
BsaAI	YACGTR	2 cut(s)	283, 1235
BsaBI	GATNNNNATC	1 cut(s)	2841
BsaHI	GRCGYC	2 cut(s)	585, 1993
BsaI	GGTCTC	1 cut(s)	620
BsaXI	ACNNNNNCTCC	6 cut(s)	102, 132, 699, 729, 731, 761
Bse118I	RCCGGY	3 cut(s)	1365, 2984, 3518
Bse1I	ACTGG	6 cut(s)	941, 952, 1407, 2829, 3165, 3842
Bse3DI	GCAATG	5 cut(s)	174, 1530, 1612, 2869, 3343
Bse8I	GATNNNNATC	1 cut(s)	2841
BseCI	ATCGAT	1 cut(s)	1782
BseJI	GATNNNNATC	1 cut(s)	2841
BseMI	GCAATG	5 cut(s)	174, 1530, 1612, 2869, 3343
BseMII	CTCAG	5 cut(s)	1365, 1901, 2388, 2522, 3542
BseNI	ACTGG	6 cut(s)	941, 952, 1407, 2829, 3165, 3842
BseRI	GAGGAG	6 cut(s)	20, 23, 588, 591, 629, 1280
BseSI	GKGCMC	2 cut(s)	137, 3689
BseX3I	CGGCCG	1 cut(s)	523
BseYI	CCCAGC	2 cut(s)	130, 192
BsgI	GTGCAG	4 cut(s)	161, 197, 407, 3897
Bsh1236I	CGCG	4 cut(s)	369, 660, 2436, 3343
Bsh1285I	CGRYCG	1 cut(s)	526
BshFI	GGCC	6 cut(s)	525, 1323, 1794, 1944, 3654, 3777
BshNI	GGYRCC	3 cut(s)	763, 3103, 3677
BshVI	ATCGAT	1 cut(s)	1782
BsiEI	CGRYCG	1 cut(s)	526
BsiHKAI	GWGCWC	4 cut(s)	1722, 1909, 2140, 2214
BsiSI	CCGG	7 cut(s)	242, 889, 1366, 2531, 2577, 2985, 3519
BslFI	GGGAC	8 cut(s)	234, 251, 1160, 1493, 2292, 2558, 2616, 3107
BsmAI	GTCTC	6 cut(s)	46, 620, 1049, 1176, 1521, 2712
BsmFI	GGGAC	8 cut(s)	234, 251, 1160, 1493, 2292, 2558, 2616, 3107
BsmI	GAATGC	3 cut(s)	573, 946, 1093
BsnI	GGCC	6 cut(s)	525, 1323, 1794, 1944, 3654, 3777
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	8 cut(s)	137, 1722, 1909, 2077, 2140, 2214, 2728, 3689
Bsp19I	CCATGG	1 cut(s)	3183
BspANI	GGCC	6 cut(s)	525, 1323, 1794, 1944, 3654, 3777
BspCNI	CTCAG	5 cut(s)	1366, 1902, 2389, 2521, 3541
BspDI	ATCGAT	1 cut(s)	1782
BspFNI	CGCG	4 cut(s)	369, 660, 2436, 3343
BspHI	TCATGA	2 cut(s)	1555, 1714
BspLI	GGNNCC	6 cut(s)	239, 240, 765, 2604, 3105, 3679
BspMAI	CTGCAG	1 cut(s)	3784
BspMI	ACCTGC	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	1649
BspPI	GGATC	5 cut(s)	696, 736, 1131, 2120, 3833
BspT107I	GGYRCC	3 cut(s)	763, 3103, 3677
BspTI	CTTAAG	1 cut(s)	1175
BspTNI	GGTCTC	1 cut(s)	620
BsrBI	CCGCTC	1 cut(s)	1270
BsrDI	GCAATG	5 cut(s)	174, 1530, 1612, 2869, 3343
BsrFI	RCCGGY	3 cut(s)	1365, 2984, 3518
BsrI	ACTGG	6 cut(s)	941, 952, 1407, 2829, 3165, 3842
BssAI	RCCGGY	3 cut(s)	1365, 2984, 3518
BssNI	GRCGYC	2 cut(s)	585, 1993
BssT1I	CCWWGG	2 cut(s)	3097, 3183
Bst4CI	ACNGT	8 cut(s)	139, 847, 2405, 2596, 3445, 3601, 3808, 3835
Bst6I	CTCTTC	3 cut(s)	8, 2637, 3286
BstACI	GRCGYC	2 cut(s)	585, 1993
BstAFI	CTTAAG	1 cut(s)	1175
BstAPI	GCANNNNNTGC	3 cut(s)	579, 3038, 3565
BstBAI	YACGTR	2 cut(s)	283, 1235
BstC8I	GCNNGC	5 cut(s)	413, 1371, 1647, 2085, 2659
BstDEI	CTNAG	9 cut(s)	1374, 1910, 1946, 2036, 2162, 2397, 2508, 3379, 3528
BstDSI	CCRYGG	3 cut(s)	44, 2920, 3183
BstFNI	CGCG	4 cut(s)	369, 660, 2436, 3343
BstH2I	RGCGCY	1 cut(s)	3871
BstHHI	GCGC	6 cut(s)	371, 660, 2438, 3343, 3732, 3870
BstMAI	GTCTC	6 cut(s)	46, 620, 1049, 1176, 1521, 2712
BstMCI	CGRYCG	1 cut(s)	526
BstNSI	RCATGY	2 cut(s)	1373, 2757
BstSFI	CTRYAG	7 cut(s)	1417, 1632, 1971, 3287, 3780, 3807, 3814
BstSLI	GKGCMC	2 cut(s)	137, 3689
BstUI	CGCG	4 cut(s)	369, 660, 2436, 3343
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	3 cut(s)	254, 961, 1621
BstXI	CCANNNNNNTGG	1 cut(s)	3257
BstYI	RGATCY	3 cut(s)	254, 961, 1621
BstZI	CGGCCG	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	1782
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	6 cut(s)	525, 1323, 1794, 1944, 3654, 3777
BsuTUI	ATCGAT	1 cut(s)	1782
BtgI	CCRYGG	3 cut(s)	44, 2920, 3183
BtrI	CACGTC	1 cut(s)	3968
BtsI	GCAGTG	4 cut(s)	149, 2883, 3141, 3885
BtsIMutI	CAGTG	9 cut(s)	149, 180, 934, 2410, 2836, 2883, 3141, 3760, 3885
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	5 cut(s)	413, 1371, 1647, 2085, 2659
CaiI	CAGNNNCTG	3 cut(s)	2657, 3077, 3274
CciI	TCATGA	2 cut(s)	1555, 1714
CfoI	GCGC	6 cut(s)	371, 660, 2438, 3343, 3732, 3870
Cfr10I	RCCGGY	3 cut(s)	1365, 2984, 3518
Cfr13I	GGNCC	5 cut(s)	238, 1613, 2603, 3198, 3776
ClaI	ATCGAT	1 cut(s)	1782
CseI	GACGC	3 cut(s)	574, 1970, 1982
Csp6I	GTAC	5 cut(s)	1232, 1445, 2469, 3104, 3524
CviQI	GTAC	5 cut(s)	1232, 1445, 2469, 3104, 3524
DdeI	CTNAG	9 cut(s)	1374, 1910, 1946, 2036, 2162, 2397, 2508, 3379, 3528
DraIII	CACNNNGTG	2 cut(s)	1262, 2135
EaeI	YGGCCR	1 cut(s)	523
EagI	CGGCCG	1 cut(s)	523
Eam1104I	CTCTTC	3 cut(s)	8, 2637, 3286
EarI	CTCTTC	3 cut(s)	8, 2637, 3286
Ecl136II	GAGCTC	2 cut(s)	1720, 2212
EclXI	CGGCCG	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	3097, 3183
Eco24I	GRGCYC	4 cut(s)	1722, 2077, 2214, 2728
Eco31I	GGTCTC	1 cut(s)	620
Eco32I	GATATC	2 cut(s)	1549, 3304
Eco47I	GGWCC	4 cut(s)	238, 1613, 2603, 3198
Eco52I	CGGCCG	1 cut(s)	523
Eco53kI	GAGCTC	2 cut(s)	1720, 2212
Eco57I	CTGAAG	8 cut(s)	1137, 1638, 1827, 2205, 2343, 2355, 2442, 3657
Eco72I	CACGTG	1 cut(s)	283
EcoICRI	GAGCTC	2 cut(s)	1720, 2212
EcoO109I	RGGNCCY	4 cut(s)	238, 2603, 3198, 3776
EcoRI	GAATTC	1 cut(s)	3022
EcoRV	GATATC	2 cut(s)	1549, 3304
EcoT14I	CCWWGG	2 cut(s)	3097, 3183
EcoT38I	GRGCYC	4 cut(s)	1722, 2077, 2214, 2728
ErhI	CCWWGG	2 cut(s)	3097, 3183
FalI	AAGNNNNNCTT	4 cut(s)	2328, 2360, 3552, 3584
FaqI	GGGAC	8 cut(s)	234, 251, 1160, 1493, 2292, 2558, 2616, 3107
FblI	GTMKAC	1 cut(s)	3810
FriOI	GRGCYC	4 cut(s)	1722, 2077, 2214, 2728
FspAI	RTGCGCAY	1 cut(s)	3731
FspBI	CTAG	6 cut(s)	155, 1038, 1059, 1625, 1646, 3489
FspI	TGCGCA	1 cut(s)	3731
GlaI	GCGC	6 cut(s)	370, 659, 2437, 3342, 3731, 3869
GsaI	CCCAGC	2 cut(s)	134, 196
GsuI	CTGGAG	3 cut(s)	1029, 3150, 3251
HaeII	RGCGCY	1 cut(s)	3871
HaeIII	GGCC	6 cut(s)	525, 1323, 1794, 1944, 3654, 3777
HapII	CCGG	7 cut(s)	242, 889, 1366, 2531, 2577, 2985, 3519
HgaI	GACGC	3 cut(s)	574, 1970, 1982
HhaI	GCGC	6 cut(s)	371, 660, 2438, 3343, 3732, 3870
Hin1I	GRCGYC	2 cut(s)	585, 1993
Hin6I	GCGC	6 cut(s)	369, 658, 2436, 3341, 3730, 3868
HinP1I	GCGC	6 cut(s)	369, 658, 2436, 3341, 3730, 3868
HincII	GTYRAC	2 cut(s)	2319, 2623
HindII	GTYRAC	2 cut(s)	2319, 2623
HindIII	AAGCTT	3 cut(s)	916, 1220, 2382
HpaI	GTTAAC	1 cut(s)	2319
HpaII	CCGG	7 cut(s)	242, 889, 1366, 2531, 2577, 2985, 3519
Hpy166II	GTNNAC	7 cut(s)	41, 1256, 2319, 2623, 3524, 3811, 3971
Hpy8I	GTNNAC	7 cut(s)	41, 1256, 2319, 2623, 3524, 3811, 3971
Hpy99I	CGWCG	5 cut(s)	451, 507, 590, 3513, 3855
HpyCH4III	ACNGT	8 cut(s)	139, 847, 2405, 2596, 3445, 3601, 3808, 3835
HpyCH4IV	ACGT	3 cut(s)	282, 1234, 3967
HpyF3I	CTNAG	9 cut(s)	1374, 1910, 1946, 2036, 2162, 2397, 2508, 3379, 3528
HpySE526I	ACGT	3 cut(s)	282, 1234, 3967
Hsp92I	GRCGYC	2 cut(s)	585, 1993
HspAI	GCGC	6 cut(s)	369, 658, 2436, 3341, 3730, 3868
KflI	GGGWCCC	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	3107
KspAI	GTTAAC	1 cut(s)	2319
LmnI	GCTCC	7 cut(s)	616, 1267, 1693, 2217, 2534, 3131, 3270
MaeI	CTAG	6 cut(s)	155, 1038, 1059, 1625, 1646, 3489
MaeII	ACGT	3 cut(s)	282, 1234, 3967
MaeIII	GTNAC	6 cut(s)	461, 841, 2647, 2663, 2749, 3092
MbiI	CCGCTC	1 cut(s)	1270
MflI	RGATCY	3 cut(s)	254, 961, 1621
MhlI	GDGCHC	8 cut(s)	137, 1722, 1909, 2077, 2140, 2214, 2728, 3689
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	5 cut(s)	399, 666, 1254, 2156, 3464
MroXI	GAANNNNTTC	1 cut(s)	2340
MseI	TTAA	7 cut(s)	23, 63, 1176, 1575, 2318, 3117, 3830
MslI	CAYNNNNRTG	6 cut(s)	110, 211, 939, 1542, 1605, 2715
MspA1I	CMGCKG	3 cut(s)	203, 329, 2654
MspCI	CTTAAG	1 cut(s)	1175
MspI	CCGG	7 cut(s)	242, 889, 1366, 2531, 2577, 2985, 3519
Mva1269I	GAATGC	3 cut(s)	573, 946, 1093
MvnI	CGCG	4 cut(s)	369, 660, 2436, 3343
NciI	CCSGG	4 cut(s)	242, 890, 2532, 2577
NcoI	CCATGG	1 cut(s)	3183
NheI	GCTAGC	1 cut(s)	1645
NlaIV	GGNNCC	6 cut(s)	239, 240, 765, 2604, 3105, 3679
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	3 cut(s)	461, 2749, 3092
NsbI	TGCGCA	1 cut(s)	3731
NspI	RCATGY	2 cut(s)	1373, 2757
PaeI	GCATGC	1 cut(s)	1373
PagI	TCATGA	2 cut(s)	1555, 1714
PaqCI	CACCTGC	1 cut(s)	169
PciI	ACATGT	1 cut(s)	2753
PctI	GAATGC	3 cut(s)	573, 946, 1093
PdmI	GAANNNNTTC	1 cut(s)	2340
PflMI	CCANNNNNTGG	3 cut(s)	1209, 3236, 3628
PfoI	TCCNGGA	1 cut(s)	3267
PleI	GAGTC	1 cut(s)	829
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	829
Ppu21I	YACGTR	2 cut(s)	283, 1235
PpuMI	RGGWCCY	3 cut(s)	238, 2603, 3198
PscI	ACATGT	1 cut(s)	2753
PshBI	ATTAAT	1 cut(s)	63
Psp124BI	GAGCTC	2 cut(s)	1722, 2214
Psp5II	RGGWCCY	3 cut(s)	238, 2603, 3198
PspCI	CACGTG	1 cut(s)	283
PspFI	CCCAGC	2 cut(s)	130, 192
PspN4I	GGNNCC	6 cut(s)	239, 240, 765, 2604, 3105, 3679
PspPI	GGNCC	5 cut(s)	238, 1613, 2603, 3198, 3776
PspPPI	RGGWCCY	3 cut(s)	238, 2603, 3198
PsrI	GAACNNNNNNTAC	2 cut(s)	2136, 2168
PstI	CTGCAG	1 cut(s)	3784
PstNI	CAGNNNCTG	3 cut(s)	2657, 3077, 3274
PsuI	RGATCY	3 cut(s)	254, 961, 1621
RsaI	GTAC	5 cut(s)	1233, 1446, 2470, 3105, 3525
RsaNI	GTAC	5 cut(s)	1232, 1445, 2469, 3104, 3524
RseI	CAYNNNNRTG	6 cut(s)	110, 211, 939, 1542, 1605, 2715
SacI	GAGCTC	2 cut(s)	1722, 2214
SaqAI	TTAA	7 cut(s)	23, 63, 1176, 1575, 2318, 3117, 3830
Sau96I	GGNCC	5 cut(s)	238, 1613, 2603, 3198, 3776
ScaI	AGTACT	1 cut(s)	1446
SchI	GAGTC	1 cut(s)	830
SduI	GDGCHC	8 cut(s)	137, 1722, 1909, 2077, 2140, 2214, 2728, 3689
SfcI	CTRYAG	7 cut(s)	1417, 1632, 1971, 3287, 3780, 3807, 3814
SinI	GGWCC	4 cut(s)	238, 1613, 2603, 3198
SmiMI	CAYNNNNRTG	6 cut(s)	110, 211, 939, 1542, 1605, 2715
SmlI	CTYRAG	5 cut(s)	1175, 1562, 1900, 2012, 3893
SmoI	CTYRAG	5 cut(s)	1175, 1562, 1900, 2012, 3893
SpeI	ACTAGT	1 cut(s)	1058
SphI	GCATGC	1 cut(s)	1373
SspI	AATATT	6 cut(s)	67, 233, 2330, 2352, 2448, 3327
SspMI	CTAG	6 cut(s)	155, 1038, 1059, 1625, 1646, 3489
SstI	GAGCTC	2 cut(s)	1722, 2214
StyI	CCWWGG	2 cut(s)	3097, 3183
TaaI	ACNGT	8 cut(s)	139, 847, 2405, 2596, 3445, 3601, 3808, 3835
TaiI	ACGT	3 cut(s)	285, 1237, 3970
TaqI	TCGA	8 cut(s)	505, 1195, 1357, 1396, 1782, 2301, 2728, 3511
TatI	WGTACW	1 cut(s)	1444
TauI	GCSGC	7 cut(s)	167, 518, 585, 663, 2198, 2657, 3346
Tru1I	TTAA	7 cut(s)	23, 63, 1176, 1575, 2318, 3117, 3830
Tru9I	TTAA	7 cut(s)	23, 63, 1176, 1575, 2318, 3117, 3830
TscAI	CASTG	9 cut(s)	149, 180, 941, 2410, 2836, 2883, 3141, 3760, 3885
TseFI	GTSAC	3 cut(s)	461, 2749, 3092
Tsp45I	GTSAC	3 cut(s)	461, 2749, 3092
TspDTI	ATGAA	8 cut(s)	342, 650, 1454, 2013, 2017, 2144, 2655, 3584
TspGWI	ACGGA	4 cut(s)	530, 924, 3034, 3839
TspRI	CASTG	9 cut(s)	149, 180, 941, 2410, 2836, 2883, 3141, 3760, 3885
Van91I	CCANNNNNTGG	3 cut(s)	1209, 3236, 3628
Vha464I	CTTAAG	1 cut(s)	1175
VpaK11BI	GGWCC	4 cut(s)	238, 1613, 2603, 3198
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	8 cut(s)	701, 1288, 1410, 1493, 2430, 3022, 3454, 3713
XceI	RCATGY	2 cut(s)	1373, 2757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	3810
XmnI	GAANNNNTTC	1 cut(s)	2340
XspI	CTAG	6 cut(s)	155, 1038, 1059, 1625, 1646, 3489
ZrmI	AGTACT	1 cut(s)	1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.