Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0008467

Physical Location & Seq

Genomic Coordinates Forward (+)

96388 .. 101928

Gene Structure 5541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgttcatttggcggaagaggaggccgaggatgactagagagcggaggaggataatgaagacatcggagacgagagaagaggtcgtcgagagcttggccatcgctggtctcgactcaaacggaaagatggccatggagatggattcaactggtttgggtgcttcagcagaatcaagtaaagttctgggatctgatttgttgttcaaggccatgcaatccttgagtgctcggagagaaataattgcgaagggtcttgaaagtggccttagaaatgatgcctctgatgctgcaatagctatgttccaaaagggtttggatgcttcagcagaatcaagtaaagttctgggatctgatttgttgttcaagaccatgcaatccttgagtgctcggagagaaataattgcgaagggtcttgaaagtggccttagaaatgatgcctctgatgctgcaatagctatgttccaaaagtggcgtctttgcgagaatggacttgaggaccattcattcattcttctaagcagattcgctaatgagcttgaagctatgggaggggctcattggttggcacaagatgtgaaatcaaaggatctaagctcttggaatgatccacttggtgcccttatagttggtgttcatcagctaaggttatctcgttggaagcctgaagaatgtgctgctattgaaaacaagctccttgcctggaaatcaagaggtccttctgaaacagaagcgagtgaagatggcaaaataatctggggattagggcataaagctactctctatagagccgccaggaggttaactgaagaatattctgaagcacttcttcaaatatttccccaaaatgtccaggtattaggaaaagcttttggaatacctgaaaacagtgtgaggacatacgctgaagctgaaattcgtgctagtgttgatgatatagagacactatcgttgtctgactttcgacctacaaatgctatgcagtttcaggttgagaggattgtccctggatcaataccatcaactgtagagggacctgttgttctcgctgtcaacaaagcagatggagatgaaaagctaacagcggctgggaataacattgtgggagttgttcttctggcttcctcacttgtctcatcttggtgtcagggctcaacaaatatgtcttctctgtccaaatgtgacagtcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

396

Amino Acids

43.31

Weight (kDa)

6.08

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26570 AT5G26570
fragaria_vesca	FvH4_4g12510 FvH4_4g12510
malus_domestica	MD04G1025900.v1.1
prunus_persica	Prupe.1G175200_v2.0.a1
pyrus_communis	pycom04g02200
rosa_chinensis	RchiOBHm_Chr4g0411251 RchiOBHm_Chr4g0411331
rosa_laevigata	RLG00000008365 RLG00000008368
rosa_multiflora	Rmu_sc0000543.1_g000027 Rmu_sc0000543.1_g000049
rosa_roxburghii	Rroxscaffold_5G00355910
rosa_rugosa	Rorug04G0110100
rosa_samantha	Rh4AG167100 Rh4BG163600 Rh4BG164200 Rh4CG178800 Rh4DG161900
rosa_wichuraiana	Rw4G013760 Rw4G013810 Rw4G013910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	4 cut(s)	13, 43, 789, 1082
AclWI	GGATC	5 cut(s)	196, 355, 594, 599, 1015
AcoI	YGGCCR	2 cut(s)	96, 129
AcsI	RAATTY	1 cut(s)	912
AcuI	CTGAAG	6 cut(s)	147, 306, 684, 825, 837, 924
AcyI	GRCGYC	1 cut(s)	472
AdeI	CACNNNGTG	1 cut(s)	614
AfiI	CCNNNNNNNGG	1 cut(s)	795
AgsI	TTSAA	8 cut(s)	147, 205, 257, 364, 416, 539, 683, 830
AjnI	CCWGG	4 cut(s)	698, 791, 849, 1003
AloI	GAACNNNNNNTCC	2 cut(s)	1023, 1055
Alw21I	GWGCWC	2 cut(s)	229, 388
Alw26I	GTCTC	4 cut(s)	62, 113, 932, 1135
AlwI	GGATC	5 cut(s)	196, 355, 594, 599, 1015
AlwNI	CAGNNNCTG	1 cut(s)	1085
AoxI	GGCC	6 cut(s)	23, 96, 129, 207, 262, 421
ApeKI	GCWGC	3 cut(s)	287, 446, 674
ApoI	RAATTY	1 cut(s)	912
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
Asp700I	GAANNNNTTC	1 cut(s)	822
AspS9I	GGNCC	3 cut(s)	496, 713, 1031
AvaII	GGWCC	3 cut(s)	496, 713, 1031
BaeGI	GKGCMC	1 cut(s)	619
BalI	TGGCCA	2 cut(s)	98, 131
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	2 cut(s)	556, 1151
BbsI	GAAGAC	2 cut(s)	65, 1155
Bbv12I	GWGCWC	2 cut(s)	229, 388
BbvI	GCAGC	3 cut(s)	274, 433, 661
BccI	CCATC	6 cut(s)	107, 121, 133, 734, 1024, 1055
BciT130I	CCWGG	4 cut(s)	700, 793, 851, 1005
BcoDI	GTCTC	4 cut(s)	62, 113, 932, 1135
BfaI	CTAG	2 cut(s)	36, 921
BfmI	CTRYAG	2 cut(s)	781, 1023
BisI	GCNGC	5 cut(s)	288, 447, 675, 789, 1083
BlsI	GCNGC	5 cut(s)	289, 448, 676, 790, 1084
Bme1390I	CCNGG	4 cut(s)	700, 793, 851, 1005
Bme18I	GGWCC	3 cut(s)	496, 713, 1031
BmgT120I	GGNCC	3 cut(s)	496, 713, 1031
BmiI	GGNNCC	2 cut(s)	616, 1032
BmrFI	CCNGG	4 cut(s)	700, 793, 851, 1005
BmsI	GCATC	5 cut(s)	265, 274, 307, 424, 433
BpiI	GAAGAC	2 cut(s)	65, 1155
Bpu10I	CCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	3 cut(s)	241, 400, 512
BsaHI	GRCGYC	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	26, 132, 1003
Bsc4I	CCNNNNNNNGG	1 cut(s)	795
Bse1I	ACTGG	1 cut(s)	154
BseBI	CCWGG	4 cut(s)	700, 793, 851, 1005
BseDI	CCNNGG	3 cut(s)	26, 132, 1003
BseGI	GGATG	2 cut(s)	36, 322
BseLI	CCNNNNNNNGG	1 cut(s)	795
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	2 cut(s)	34, 61
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	3 cut(s)	274, 433, 661
BseYI	CCCAGC	1 cut(s)	1085
BshFI	GGCC	6 cut(s)	25, 98, 131, 209, 264, 423
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	2 cut(s)	229, 388
BslFI	GGGAC	2 cut(s)	986, 1044
BslI	CCNNNNNNNGG	1 cut(s)	795
BsmAI	GTCTC	4 cut(s)	62, 113, 932, 1135
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	986, 1044
BsnI	GGCC	6 cut(s)	25, 98, 131, 209, 264, 423
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	5 cut(s)	229, 388, 556, 619, 1151
Bsp143I	GATC	5 cut(s)	188, 347, 586, 604, 1007
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	4 cut(s)	13, 43, 789, 1082
BspANI	GGCC	6 cut(s)	25, 98, 131, 209, 264, 423
BspLI	GGNNCC	2 cut(s)	616, 1032
BspPI	GGATC	5 cut(s)	196, 355, 594, 599, 1015
BspT107I	GGYRCC	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	26, 132, 1003
BssMI	GATC	5 cut(s)	188, 347, 586, 604, 1007
BssNI	GRCGYC	1 cut(s)	472
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	4 cut(s)	700, 793, 851, 1005
Bst4CI	ACNGT	3 cut(s)	887, 1024, 1184
Bst6I	CTCTTC	2 cut(s)	11, 72
BstACI	GRCGYC	1 cut(s)	472
BstDEI	CTNAG	5 cut(s)	266, 425, 515, 590, 641
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	36, 322
BstKTI	GATC	5 cut(s)	191, 350, 589, 607, 1010
BstMAI	GTCTC	4 cut(s)	62, 113, 932, 1135
BstMBI	GATC	5 cut(s)	188, 347, 586, 604, 1007
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 293, 443, 452
BstNI	CCWGG	4 cut(s)	700, 793, 851, 1005
BstSCI	CCNGG	4 cut(s)	698, 791, 849, 1003
BstSFI	CTRYAG	2 cut(s)	781, 1023
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	3 cut(s)	274, 433, 661
BstV2I	GAAGAC	2 cut(s)	65, 1155
BstX2I	RGATCY	3 cut(s)	188, 347, 586
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	3 cut(s)	188, 347, 586
BsuRI	GGCC	6 cut(s)	25, 98, 131, 209, 264, 423
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	36, 322
BtsIMutI	CAGTG	1 cut(s)	892
CaiI	CAGNNNCTG	1 cut(s)	1085
Cfr13I	GGNCC	3 cut(s)	496, 713, 1031
CseI	GACGC	1 cut(s)	461
CviAII	CATG	3 cut(s)	133, 211, 370
DdeI	CTNAG	5 cut(s)	266, 425, 515, 590, 641
DpnI	GATC	5 cut(s)	190, 349, 588, 606, 1009
DpnII	GATC	5 cut(s)	188, 347, 586, 604, 1007
DraIII	CACNNNGTG	1 cut(s)	614
EaeI	YGGCCR	2 cut(s)	96, 129
Eam1104I	CTCTTC	2 cut(s)	11, 72
EarI	CTCTTC	2 cut(s)	11, 72
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	2 cut(s)	556, 1151
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	3 cut(s)	496, 713, 1031
Eco57I	CTGAAG	6 cut(s)	147, 306, 684, 825, 837, 924
EcoO109I	RGGNCCY	2 cut(s)	713, 1031
EcoRII	CCWGG	4 cut(s)	698, 791, 849, 1003
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	2 cut(s)	556, 1151
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	3 cut(s)	136, 214, 373
FalI	AAGNNNNNCTT	4 cut(s)	700, 732, 810, 842
FaqI	GGGAC	2 cut(s)	986, 1044
FatI	CATG	3 cut(s)	132, 210, 369
Fnu4HI	GCNGC	5 cut(s)	288, 447, 675, 789, 1083
FokI	GGATG	2 cut(s)	43, 329
FriOI	GRGCYC	2 cut(s)	556, 1151
Fsp4HI	GCNGC	5 cut(s)	288, 447, 675, 789, 1083
FspBI	CTAG	2 cut(s)	36, 921
GluI	GCNGC	5 cut(s)	288, 447, 675, 789, 1083
GsaI	CCCAGC	1 cut(s)	1089
HaeIII	GGCC	6 cut(s)	25, 98, 131, 209, 264, 423
HgaI	GACGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	136, 214, 373
HincII	GTYRAC	2 cut(s)	801, 1051
HindII	GTYRAC	2 cut(s)	801, 1051
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	5 cut(s)	113, 143, 170, 329, 522
HpaI	GTTAAC	1 cut(s)	801
Hpy166II	GTNNAC	2 cut(s)	801, 1051
Hpy188III	TCNNGA	6 cut(s)	88, 110, 254, 364, 413, 708
Hpy8I	GTNNAC	2 cut(s)	801, 1051
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	241, 400, 726
HpyCH4III	ACNGT	3 cut(s)	887, 1024, 1184
HpyCH4V	TGCA	5 cut(s)	214, 290, 373, 449, 979
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 293, 443, 452
HpyF3I	CTNAG	5 cut(s)	266, 425, 515, 590, 641
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	3 cut(s)	136, 214, 373
KspAI	GTTAAC	1 cut(s)	801
Kzo9I	GATC	5 cut(s)	188, 347, 586, 604, 1007
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	3 cut(s)	274, 433, 661
LweI	GCATC	5 cut(s)	265, 274, 307, 424, 433
MaeI	CTAG	2 cut(s)	36, 921
MaeIII	GTNAC	1 cut(s)	1178
MalI	GATC	5 cut(s)	190, 349, 588, 606, 1009
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	5 cut(s)	188, 347, 586, 604, 1007
MflI	RGATCY	3 cut(s)	188, 347, 586
MhlI	GDGCHC	5 cut(s)	229, 388, 556, 619, 1151
MlsI	TGGCCA	2 cut(s)	98, 131
MluCI	AATT	3 cut(s)	240, 399, 912
MluNI	TGGCCA	2 cut(s)	98, 131
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	635
Mox20I	TGGCCA	2 cut(s)	98, 131
MroXI	GAANNNNTTC	1 cut(s)	822
MscI	TGGCCA	2 cut(s)	98, 131
MseI	TTAA	1 cut(s)	800
MslI	CAYNNNNRTG	2 cut(s)	137, 1138
Msp20I	TGGCCA	2 cut(s)	98, 131
MspA1I	CMGCKG	1 cut(s)	1082
MspR9I	CCNGG	4 cut(s)	700, 793, 851, 1005
MvaI	CCWGG	4 cut(s)	700, 793, 851, 1005
MwoI	GCNNNNNNNGC	4 cut(s)	284, 293, 443, 452
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	5 cut(s)	188, 347, 586, 604, 1007
NlaIII	CATG	3 cut(s)	136, 214, 373
NlaIV	GGNNCC	2 cut(s)	616, 1032
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	1178
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	4 cut(s)	143, 170, 329, 522
PkrI	GCNGC	5 cut(s)	289, 448, 676, 790, 1084
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PpuMI	RGGWCCY	2 cut(s)	713, 1031
Psp5II	RGGWCCY	2 cut(s)	713, 1031
Psp6I	CCWGG	4 cut(s)	698, 791, 849, 1003
PspFI	CCCAGC	1 cut(s)	1085
PspGI	CCWGG	4 cut(s)	698, 791, 849, 1003
PspN4I	GGNNCC	2 cut(s)	616, 1032
PspPI	GGNCC	3 cut(s)	496, 713, 1031
PspPPI	RGGWCCY	2 cut(s)	713, 1031
PstNI	CAGNNNCTG	1 cut(s)	1085
PsuI	RGATCY	3 cut(s)	188, 347, 586
RseI	CAYNNNNRTG	2 cut(s)	137, 1138
SaqAI	TTAA	1 cut(s)	800
SatI	GCNGC	5 cut(s)	288, 447, 675, 789, 1083
Sau3AI	GATC	5 cut(s)	188, 347, 586, 604, 1007
Sau96I	GGNCC	3 cut(s)	496, 713, 1031
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	4 cut(s)	700, 793, 851, 1005
SduI	GDGCHC	5 cut(s)	229, 388, 556, 619, 1151
SfaNI	GCATC	5 cut(s)	265, 274, 307, 424, 433
SfcI	CTRYAG	2 cut(s)	781, 1023
SinI	GGWCC	3 cut(s)	496, 713, 1031
SmiMI	CAYNNNNRTG	2 cut(s)	137, 1138
SmlI	CTYRAG	3 cut(s)	220, 379, 491
SmoI	CTYRAG	3 cut(s)	220, 379, 491
Sse9I	AATT	3 cut(s)	240, 399, 912
SsiI	CCGC	4 cut(s)	13, 43, 789, 1082
SspI	AATATT	2 cut(s)	812, 834
SspMI	CTAG	2 cut(s)	36, 921
StyD4I	CCNGG	4 cut(s)	698, 791, 849, 1003
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	887, 1024, 1184
TaqI	TCGA	3 cut(s)	87, 111, 961
TasI	AATT	3 cut(s)	240, 399, 912
TauI	GCSGC	2 cut(s)	791, 1085
TfiI	GAWTC	4 cut(s)	143, 170, 329, 522
Tru1I	TTAA	1 cut(s)	800
Tru9I	TTAA	1 cut(s)	800
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	1 cut(s)	1178
TseI	GCWGC	3 cut(s)	287, 446, 674
Tsp45I	GTSAC	1 cut(s)	1178
TspDTI	ATGAA	5 cut(s)	71, 492, 496, 623, 1083
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	892
VpaK11BI	GGWCC	3 cut(s)	496, 713, 1031
XapI	RAATTY	1 cut(s)	912
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	2 cut(s)	36, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.