Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008467

Physical Location & Seq

Genomic Coordinates Forward (+)

38969329 .. 38985767

Gene Structure 16439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3576 bp

ATGGATTGCGTGCCTTCGCTGCACTCCTCCGCTTCTTCTTCACAGTTCCTCCGTCACAAGCAATTCAGATTCCTCCACAATCACCTTCAATGCCATCGAAGCGTTGCGGCACTCGGCCGTAGAACAAGTTTCCGTCCTCTCCATCACAAATCAAACAATCTTCGCATTCTCTGCGGCGTCGGTGTTTCTCCTCCTCAATCCACAGAGGAGCAGAAGGAGACCAAGATGAAGTCCAAGTCAAAGTCTGGGCACGACAAGGTTTGGCTTAATATTAGGTTAGATCACCAAGTTGCGTTTGGAGACAGTGTTGCGGTTTTGGGATCATCAAAGGAGTTAGGGTCGTGGAAGAAGAAGGTGCCTCTGAATTGGACAGAGAGTGGATGGGTATGCAAATTGGAGTTCAAGGGGGGTGAGTCCGTTGAGTATAAGTTTGTAACTGTTAGGGCTGACAAGAGTATGCTTTGGGAAGGTGGTGATAACCGGGTTTTGAAACTTCCCAACAGAGGAAGCTTTGGGTTGGTTTGCCACTGGAATGCAACTGGGGAGAATGTAGATCTATTCCCATTGGACAAGGAGGATGGTGTTGAATATAAGGGGTCTTCTGCTCCCCAAACTGCTAATACAACTGCTAGTTCTCCCGATGTGGAGACTAGTCCTTTTGTTGGTCAATGGAAAGGGAATGCCATCTCATTTATGCGGTCAAATGAGCATCGGGATCGTGAATCAGGAAGAAATTGGGACACTTCAGGTCTTGAAGGGTTGTCTCTTAAGTTGGTTGAAGGTGATCGAAATGCCAGGAATTGGTGGCAAAAGCTTGAAGTTGTACGTGATATACTACTTGAAAGTTCACAAAGTGAGGAGCGGTTGGATGCTCTCATAAATTCTTCCATTTATTTGAAGTGGATAAACACAGGCCAGATTCCTTGCTTTGAAGGTGGAGGTCATCATCGACCAAACCGGCATGCTGAGATTTCCAGGGTTATATTTCGAGAACTGGAAAGAATTTCCTGTAGGAAAGATACTTCACCCCAGGAAGTACTTGTTATCCGCAAAATTCATCCATGTCTGCCATCGTTCAAAGCAGAATTTACTGCATCTGTCCCCCTAACACGAATCAGAGACATTGCTCATCGGAATGATATCCCTCATGACCTCAAGCAAGAAATTAAGCACACAATACAAAACAAACTTCACCGCAATGCTGGTCCTGAAGATCTAGTTGCTACAGAAGCCATGCTAGCAAGAATAACCAAGAACCCTGGACAATATAGTGAAGCATTTGTGGAGCAGTTCAAGATATTCCATCATGAACTCAAAGACTTTTTCAATGCTGGAAGCCTTGCTGAACAACTTGAATCCATCAAAGATTCCATCGATGATAAAGGCCATTCAGCTCTTACATTGTTTTTGGAGTGCAAAAAGGGTTTGGATGCTTCAGCAGAATCAAGTAAAGTTTTGGGATCTGATTTGTTGTTCAAGACCATGCAATCTTTGAGTGCTCTGAGAGATATAATCGCAAAGGGTCTTGAAAGTGGCCTTAGAAATGATGCTTCTGATGCTGCTATAGCTATGCGTCAAAAGTGGCGTCTTTGCGAGATTGGACTTGAGGACTATTCATTCATCCTTCTAAGCAGATTTGCTAATGAGCTTGAAGCTATGGGAGGGGCTCATTGGCTGGCACAAGATGTGAAATCAAAGGATGTAAGCTCTTGGAATGATCCACTTGGTGCTCTTGTAGTTGGTGTTCATCAGCTAAGGTTATCTGGTTGGAAGCCTGAAGAATGTGCTGCTATTCAAAACGAGCTCCTTGCCTGGAAAGCAAGAGGTCTTTCTCAAACAGAAGCGAGTGAAGATGGCAAAACAATCTGGGGACTACGGCATAAAGCTACTCTCGATAGAGCCAGGAGGTTAACTGAAGAATATTCTGAAGCACTTCTTCAAATATTTCCCCAAAATGTCCAGGTGTTAGGAAAAGCTTTTGGAATACCTGAGAACAGTGTAAGGACATATGCTGAAGCTGAAATTCGCGCTGGTGTAATATTTCAGGTTTCAAAACTCTGTACCCTACTTTTGAAAGCAGTTAGAACTACCATTGGTTCTCAGGGTTGGGATGTTATTGTGCCGGGAGCTGCTATGGGAACATTGGTTCAGGTTGAGAGGATTGTCCCCGGTTCAATACCATCAACTGTTGAGGGACCTGTTGTTCTCGTTGTCAACAAAGCAGATGGAGATGAAGAGGTAACAGCGGCTGGGAGTAACATTGTGGGAGTTGTTCTTCTGCAAGAGCTTCCTCACTTGTCTCATCTTGGTGTCAGGGCTCGACAAGAGAAGGTTGTGTATGTGACATGTGAAGATGATGACAAAGTTGCTGATATACAAAAACTCATGGGAAAATATGTGAGGTTAGAAGCATCCTCGTCCAGTGTTGATATATATCCTTCATCAGAAAACAGCAATGGCACTTTTGCAGTGAAAAATGTTTCAAGTGATGTTGCACCAAAAGTTGAATCCCGTGGAACTCCTGACCCTTCCTGGTCTGCTGCTAAAACCCCAGTATCCAATCAGGGGGTATCTGCCGGTGGAGTTTTACTACTTGCTGATGCAGAAGCACAGAATTCGGGTGCAAAAGCGGCTGCTTGTGGTCGTTTAGCTTCTTTGGCAGCAGCATCTGATAAAGTTTTTAGTGACCAAGGGGTACCAGCTTCCTTTAATGTCCCTGCTGGAGCAGTGATACCATTTGGCTCTATGGAACTGGCATTAGAGCAAAGCAAATCCATGGAATCATTCAGGTCCTTTCTAAATATGATAGAAACATTGAAGCCAGAAAGTGGAGAACTTGACCAAGTATGTGGTCAGCTCCAGGAACTGATCTCTTCTCTACAGCCCTCCAAAGATATCATTGATAGAATAGCCAAAATATTTCCAGGCAATGCGCGGCTAATTGTTCGTTCAAGTGCTAATGTTGAGGACTTAGCTGGAATGTCGGCTGCTGGACTATATGATTCAATTCCCAATGTTAGTGTTTCAAATCCGACAGTATTTGCAAATTCTATAAGCAAAGTGTGGGCATCACTTTATACTAGGAGGGCAGTTTTGAGCCGTCGAGTTGCCGGTGTACCCCAGAAGGATGCTACAATGGCAATTCTGGTGCAAGAAATGCTTTCACCAGACTTATCGTTTGTGCTTCATACAGTCAGCCCAACAGACCAAGACCATAATTTGGTTGAGGCTGAAATTGCTTCTGGCCTCGGTGAAACTTTGGCTTCAGGCACCAGGGGCACACCCTGGCGTATATCGTCTGGAAAATTTGATGGGAATGTGCGCACGTTGGCATTTGCTAATTTCAGTGAGGAACTACTTGGTGCAGGCCCTGCAGACGGGGAGGTTATCCATTTGACTGTAGACTACAGCAAGAAACCATTAACTGTTGATCCAGTTTTCCGTCAGCAGCTTGGTCAGCGCCTCGGTGCAGTGGGATTTTTCCTTGAGCAGAAGTTCGGCTGCCCACAGGATGTGGAAGGATGTGTTGTTGGCAAAGACATCTTTATAGTCCAGACACGTCCACAGCCCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

1191

Amino Acids

130.38

Weight (kDa)

6.41

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	92 - 170	1.3e-14	Starch binding domain
GWD1_pHisD	PF22973	703 - 817	1.1e-33	Alpha-glucan water dikinase, phosphohistidine-like domain
PPDK_N	PF01326	902 - 1189	5.2e-31	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26570 AT5G26570
fragaria_vesca	FvH4_4g12510 FvH4_4g12510
malus_domestica	MD04G1025900.v1.1
prunus_persica	Prupe.1G175200_v2.0.a1
pyrus_communis	pycom04g02200
rosa_chinensis	RchiOBHm_Chr4g0411251 RchiOBHm_Chr4g0411331
rosa_laevigata	RLG00000008365 RLG00000008368
rosa_multiflora	Rmu_sc0000543.1_g000027 Rmu_sc0000543.1_g000049
rosa_roxburghii	Rroxscaffold_5G00355910
rosa_rugosa	Rorug04G0110100
rosa_samantha	Rh4AG167100 Rh4BG163600 Rh4BG164200 Rh4CG178800 Rh4DG161900
rosa_wichuraiana	Rw4G013760 Rw4G013810 Rw4G013910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	3323
Acc65I	GGTACC	1 cut(s)	2695
AccB1I	GGYRCC	3 cut(s)	355, 2695, 3269
AccB7I	CCANNNNNTGG	3 cut(s)	801, 2828, 3220
AccBSI	CCGCTC	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	3402
AccII	CGCG	2 cut(s)	2028, 2935
AclWI	GGATC	5 cut(s)	328, 723, 1468, 1712, 3425
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	8 cut(s)	880, 1002, 1053, 1085, 2022, 2614, 3046, 3305
AcuI	CTGAAG	8 cut(s)	729, 1230, 1419, 1797, 1935, 1947, 2034, 3249
AcyI	GRCGYC	2 cut(s)	177, 1585
AdeI	CACNNNGTG	2 cut(s)	854, 1727
AfaI	GTAC	5 cut(s)	825, 1038, 2062, 2697, 3117
AfiI	CCNNNNNNNGG	7 cut(s)	503, 662, 801, 2565, 2828, 3220, 3377
AflII	CTTAAG	1 cut(s)	767
AflIII	ACRYGT	2 cut(s)	2345, 3557
AhlI	ACTAGT	1 cut(s)	650
AjiI	CACGTC	1 cut(s)	3560
AloI	GAACNNNNNNTCC	4 cut(s)	2130, 2162, 2187, 2219
Alw21I	GWGCWC	3 cut(s)	1501, 1732, 1806
Alw26I	GTCTC	6 cut(s)	212, 294, 641, 768, 1113, 2304
AlwI	GGATC	5 cut(s)	328, 723, 1468, 1712, 3425
AlwNI	CAGNNNCTG	4 cut(s)	2249, 2669, 2866, 3371
AoxI	GGCC	6 cut(s)	115, 913, 1384, 1534, 3244, 3367
ApoI	RAATTY	8 cut(s)	880, 1002, 1053, 1085, 2022, 2614, 3046, 3305
ArsI	GACNNNNNNTTYG	4 cut(s)	1570, 1602, 3161, 3193
Asp700I	GAANNNNTTC	1 cut(s)	1932
Asp718I	GGTACC	1 cut(s)	2695
AspLEI	GCGC	4 cut(s)	2030, 2935, 3324, 3462
AspS9I	GGNCC	4 cut(s)	1205, 2195, 2790, 3368
AsuC2I	CCSGG	3 cut(s)	482, 2124, 2169
AsuHPI	GGTGA	9 cut(s)	74, 275, 422, 485, 794, 1017, 1184, 3156, 3263
AsuNHI	GCTAGC	1 cut(s)	1237
AvaII	GGWCC	3 cut(s)	1205, 2195, 2790
BaeGI	GKGCMC	2 cut(s)	252, 3281
BaeI	ACNNNNGTAYC	2 cut(s)	2538, 2571
BanI	GGYRCC	3 cut(s)	355, 2695, 3269
BanII	GRGCYC	3 cut(s)	1669, 1806, 2320
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	3 cut(s)	1501, 1732, 1806
BceAI	ACGGC	3 cut(s)	102, 1892, 3084
BcgI	CGANNNNNNTGC	6 cut(s)	698, 732, 1790, 1824, 2598, 2632
BciVI	GTATCC	1 cut(s)	2566
BcnI	CCSGG	3 cut(s)	482, 2124, 2169
BcoDI	GTCTC	6 cut(s)	212, 294, 641, 768, 1113, 2304
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	5 cut(s)	630, 651, 1217, 1238, 3081
BfmI	CTRYAG	7 cut(s)	1009, 1224, 1563, 2879, 3372, 3399, 3406
BfoI	RGCGCY	1 cut(s)	3463
BfrI	CTTAAG	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	2566
BglII	AGATCT	2 cut(s)	553, 1213
BmcAI	AGTACT	1 cut(s)	1038
Bme18I	GGWCC	3 cut(s)	1205, 2195, 2790
BmgBI	CACGTC	1 cut(s)	3560
BmgT120I	GGNCC	4 cut(s)	1205, 2195, 2790, 3368
BmiI	GGNNCC	4 cut(s)	357, 2196, 2697, 3271
BmrI	ACTGGG	2 cut(s)	549, 2546
BmtI	GCTAGC	1 cut(s)	1241
BmuI	ACTGGG	2 cut(s)	549, 2546
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	2742, 2843
Bpu10I	CCTNAGC	1 cut(s)	1754
BpuEI	CTTGAG	3 cut(s)	1139, 1625, 3506
BpuMI	CCSGG	3 cut(s)	482, 2124, 2169
Bsa29I	ATCGAT	1 cut(s)	1374
BsaAI	YACGTR	1 cut(s)	827
BsaBI	GATNNNNATC	1 cut(s)	2433
BsaHI	GRCGYC	2 cut(s)	177, 1585
BsaI	GGTCTC	1 cut(s)	212
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 291, 321, 323, 353
Bsc4I	CCNNNNNNNGG	7 cut(s)	503, 662, 801, 2565, 2828, 3220, 3377
Bse118I	RCCGGY	3 cut(s)	957, 2576, 3110
Bse1I	ACTGG	7 cut(s)	533, 544, 999, 2421, 2552, 2757, 3434
Bse3DI	GCAATG	4 cut(s)	1122, 1204, 2461, 2935
Bse8I	GATNNNNATC	1 cut(s)	2433
BseCI	ATCGAT	1 cut(s)	1374
BseJI	GATNNNNATC	1 cut(s)	2433
BseLI	CCNNNNNNNGG	7 cut(s)	503, 662, 801, 2565, 2828, 3220, 3377
BseMI	GCAATG	4 cut(s)	1122, 1204, 2461, 2935
BseMII	CTCAG	4 cut(s)	957, 1493, 1980, 2114
BseNI	ACTGG	7 cut(s)	533, 544, 999, 2421, 2552, 2757, 3434
BseRI	GAGGAG	5 cut(s)	16, 180, 183, 221, 872
BseSI	GKGCMC	2 cut(s)	252, 3281
BseX3I	CGGCCG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	2249
BsgI	GTGCAG	3 cut(s)	5, 3384, 3489
Bsh1236I	CGCG	2 cut(s)	2028, 2935
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	6 cut(s)	117, 915, 1386, 1536, 3246, 3369
BshNI	GGYRCC	3 cut(s)	355, 2695, 3269
BshVI	ATCGAT	1 cut(s)	1374
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	3 cut(s)	1501, 1732, 1806
BsiSI	CCGG	6 cut(s)	481, 958, 2123, 2169, 2577, 3111
BslFI	GGGAC	6 cut(s)	752, 1085, 1884, 2150, 2208, 2699
BslI	CCNNNNNNNGG	7 cut(s)	503, 662, 801, 2565, 2828, 3220, 3377
BsmAI	GTCTC	6 cut(s)	212, 294, 641, 768, 1113, 2304
BsmFI	GGGAC	6 cut(s)	752, 1085, 1884, 2150, 2208, 2699
BsmI	GAATGC	3 cut(s)	165, 538, 685
BsnI	GGCC	6 cut(s)	117, 915, 1386, 1536, 3246, 3369
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	7 cut(s)	252, 1501, 1669, 1732, 1806, 2320, 3281
Bsp19I	CCATGG	1 cut(s)	2775
BspANI	GGCC	6 cut(s)	117, 915, 1386, 1536, 3246, 3369
BspCNI	CTCAG	4 cut(s)	958, 1494, 1981, 2113
BspDI	ATCGAT	1 cut(s)	1374
BspFNI	CGCG	2 cut(s)	2028, 2935
BspHI	TCATGA	2 cut(s)	1147, 1306
BspLI	GGNNCC	4 cut(s)	357, 2196, 2697, 3271
BspMAI	CTGCAG	1 cut(s)	3376
BspOI	GCTAGC	1 cut(s)	1241
BspPI	GGATC	5 cut(s)	328, 723, 1468, 1712, 3425
BspT107I	GGYRCC	3 cut(s)	355, 2695, 3269
BspTI	CTTAAG	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	862
BsrDI	GCAATG	4 cut(s)	1122, 1204, 2461, 2935
BsrFI	RCCGGY	3 cut(s)	957, 2576, 3110
BsrI	ACTGG	7 cut(s)	533, 544, 999, 2421, 2552, 2757, 3434
BssAI	RCCGGY	3 cut(s)	957, 2576, 3110
BssNI	GRCGYC	2 cut(s)	177, 1585
BssT1I	CCWWGG	2 cut(s)	2689, 2775
Bst4CI	ACNGT	9 cut(s)	45, 305, 439, 1997, 2188, 3037, 3193, 3400, 3427
Bst6I	CTCTTC	2 cut(s)	2229, 2878
BstACI	GRCGYC	2 cut(s)	177, 1585
BstAFI	CTTAAG	1 cut(s)	767
BstAPI	GCANNNNNTGC	3 cut(s)	171, 3157, 3371
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	5 cut(s)	11, 963, 1239, 1677, 3367
BstDEI	CTNAG	8 cut(s)	966, 1502, 1538, 1628, 1754, 1989, 2100, 2971
BstDSI	CCRYGG	2 cut(s)	2512, 2775
BstFNI	CGCG	2 cut(s)	2028, 2935
BstH2I	RGCGCY	1 cut(s)	3463
BstHHI	GCGC	4 cut(s)	2030, 2935, 3324, 3462
BstMAI	GTCTC	6 cut(s)	212, 294, 641, 768, 1113, 2304
BstMCI	CGRYCG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	965, 2349
BstSFI	CTRYAG	7 cut(s)	1009, 1224, 1563, 2879, 3372, 3399, 3406
BstSLI	GKGCMC	2 cut(s)	252, 3281
BstUI	CGCG	2 cut(s)	2028, 2935
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	3 cut(s)	553, 1213, 1460
BstXI	CCANNNNNNTGG	1 cut(s)	2849
BstYI	RGATCY	3 cut(s)	553, 1213, 1460
BstZI	CGGCCG	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	1374
BsuI	GTATCC	1 cut(s)	2566
BsuRI	GGCC	6 cut(s)	117, 915, 1386, 1536, 3246, 3369
BsuTUI	ATCGAT	1 cut(s)	1374
BtgI	CCRYGG	2 cut(s)	2512, 2775
BtrI	CACGTC	1 cut(s)	3560
BtsI	GCAGTG	3 cut(s)	2475, 2733, 3477
BtsIMutI	CAGTG	8 cut(s)	310, 526, 2002, 2428, 2475, 2733, 3352, 3477
Cac8I	GCNNGC	5 cut(s)	11, 963, 1239, 1677, 3367
CaiI	CAGNNNCTG	4 cut(s)	2249, 2669, 2866, 3371
CciI	TCATGA	2 cut(s)	1147, 1306
CfoI	GCGC	4 cut(s)	2030, 2935, 3324, 3462
Cfr10I	RCCGGY	3 cut(s)	957, 2576, 3110
Cfr13I	GGNCC	4 cut(s)	1205, 2195, 2790, 3368
ClaI	ATCGAT	1 cut(s)	1374
CseI	GACGC	3 cut(s)	166, 1562, 1574
Csp6I	GTAC	5 cut(s)	824, 1037, 2061, 2696, 3116
CviAII	CATG	9 cut(s)	962, 1062, 1148, 1234, 1307, 1483, 2346, 2386, 2776
CviQI	GTAC	5 cut(s)	824, 1037, 2061, 2696, 3116
DdeI	CTNAG	8 cut(s)	966, 1502, 1538, 1628, 1754, 1989, 2100, 2971
DraIII	CACNNNGTG	2 cut(s)	854, 1727
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	2229, 2878
EarI	CTCTTC	2 cut(s)	2229, 2878
Ecl136II	GAGCTC	1 cut(s)	1804
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	2689, 2775
Eco24I	GRGCYC	3 cut(s)	1669, 1806, 2320
Eco31I	GGTCTC	1 cut(s)	212
Eco32I	GATATC	2 cut(s)	1141, 2896
Eco47I	GGWCC	3 cut(s)	1205, 2195, 2790
Eco52I	CGGCCG	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	1804
Eco57I	CTGAAG	8 cut(s)	729, 1230, 1419, 1797, 1935, 1947, 2034, 3249
EcoICRI	GAGCTC	1 cut(s)	1804
EcoO109I	RGGNCCY	3 cut(s)	2195, 2790, 3368
EcoRI	GAATTC	1 cut(s)	2614
EcoRV	GATATC	2 cut(s)	1141, 2896
EcoT14I	CCWWGG	2 cut(s)	2689, 2775
EcoT38I	GRGCYC	3 cut(s)	1669, 1806, 2320
ErhI	CCWWGG	2 cut(s)	2689, 2775
FaeI	CATG	9 cut(s)	965, 1065, 1151, 1237, 1310, 1486, 2349, 2389, 2779
FalI	AAGNNNNNCTT	4 cut(s)	1920, 1952, 3144, 3176
FaqI	GGGAC	6 cut(s)	752, 1085, 1884, 2150, 2208, 2699
FatI	CATG	9 cut(s)	961, 1061, 1147, 1233, 1306, 1482, 2345, 2385, 2775
FauNDI	CATATG	1 cut(s)	2008
FblI	GTMKAC	1 cut(s)	3402
FriOI	GRGCYC	3 cut(s)	1669, 1806, 2320
FspAI	RTGCGCAY	1 cut(s)	3323
FspBI	CTAG	5 cut(s)	630, 651, 1217, 1238, 3081
FspI	TGCGCA	1 cut(s)	3323
GlaI	GCGC	4 cut(s)	2029, 2934, 3323, 3461
GsaI	CCCAGC	1 cut(s)	2253
GsuI	CTGGAG	2 cut(s)	2742, 2843
HaeII	RGCGCY	1 cut(s)	3463
HaeIII	GGCC	6 cut(s)	117, 915, 1386, 1536, 3246, 3369
HapII	CCGG	6 cut(s)	481, 958, 2123, 2169, 2577, 3111
HgaI	GACGC	3 cut(s)	166, 1562, 1574
HhaI	GCGC	4 cut(s)	2030, 2935, 3324, 3462
Hin1I	GRCGYC	2 cut(s)	177, 1585
Hin1II	CATG	9 cut(s)	965, 1065, 1151, 1237, 1310, 1486, 2349, 2389, 2779
Hin6I	GCGC	4 cut(s)	2028, 2933, 3322, 3460
HinP1I	GCGC	4 cut(s)	2028, 2933, 3322, 3460
HincII	GTYRAC	2 cut(s)	1911, 2215
HindII	GTYRAC	2 cut(s)	1911, 2215
HindIII	AAGCTT	3 cut(s)	508, 812, 1974
HpaI	GTTAAC	1 cut(s)	1911
HpaII	CCGG	6 cut(s)	481, 958, 2123, 2169, 2577, 3111
HphI	GGTGA	9 cut(s)	74, 275, 422, 485, 794, 1017, 1184, 3156, 3263
Hpy166II	GTNNAC	6 cut(s)	848, 1911, 2215, 3116, 3403, 3563
Hpy8I	GTNNAC	6 cut(s)	848, 1911, 2215, 3116, 3403, 3563
Hpy99I	CGWCG	2 cut(s)	182, 3105
HpyCH4III	ACNGT	9 cut(s)	45, 305, 439, 1997, 2188, 3037, 3193, 3400, 3427
HpyCH4IV	ACGT	3 cut(s)	826, 3326, 3559
HpyF3I	CTNAG	8 cut(s)	966, 1502, 1538, 1628, 1754, 1989, 2100, 2971
HpySE526I	ACGT	3 cut(s)	826, 3326, 3559
Hsp92I	GRCGYC	2 cut(s)	177, 1585
Hsp92II	CATG	9 cut(s)	965, 1065, 1151, 1237, 1310, 1486, 2349, 2389, 2779
HspAI	GCGC	4 cut(s)	2028, 2933, 3322, 3460
KpnI	GGTACC	1 cut(s)	2699
KspAI	GTTAAC	1 cut(s)	1911
LmnI	GCTCC	8 cut(s)	208, 610, 859, 1285, 1809, 2126, 2723, 2862
MaeI	CTAG	5 cut(s)	630, 651, 1217, 1238, 3081
MaeII	ACGT	3 cut(s)	826, 3326, 3559
MaeIII	GTNAC	6 cut(s)	53, 433, 2239, 2255, 2341, 2684
MbiI	CCGCTC	1 cut(s)	862
MflI	RGATCY	3 cut(s)	553, 1213, 1460
MhlI	GDGCHC	7 cut(s)	252, 1501, 1669, 1732, 1806, 2320, 3281
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	3 cut(s)	846, 1748, 3056
MroXI	GAANNNNTTC	1 cut(s)	1932
MseI	TTAA	6 cut(s)	267, 768, 1167, 1910, 2709, 3422
MslI	CAYNNNNRTG	4 cut(s)	531, 1134, 1197, 2307
MspA1I	CMGCKG	1 cut(s)	2246
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	6 cut(s)	481, 958, 2123, 2169, 2577, 3111
Mva1269I	GAATGC	3 cut(s)	165, 538, 685
MvnI	CGCG	2 cut(s)	2028, 2935
NciI	CCSGG	3 cut(s)	482, 2124, 2169
NcoI	CCATGG	1 cut(s)	2775
NdeI	CATATG	1 cut(s)	2008
NheI	GCTAGC	1 cut(s)	1237
NlaIII	CATG	9 cut(s)	965, 1065, 1151, 1237, 1310, 1486, 2349, 2389, 2779
NlaIV	GGNNCC	4 cut(s)	357, 2196, 2697, 3271
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	53, 2341, 2684
NsbI	TGCGCA	1 cut(s)	3323
NspI	RCATGY	2 cut(s)	965, 2349
PaeI	GCATGC	1 cut(s)	965
PagI	TCATGA	2 cut(s)	1147, 1306
PciI	ACATGT	1 cut(s)	2345
PctI	GAATGC	3 cut(s)	165, 538, 685
PdmI	GAANNNNTTC	1 cut(s)	1932
PflMI	CCANNNNNTGG	3 cut(s)	801, 2828, 3220
PfoI	TCCNGGA	1 cut(s)	2859
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	827
PpuMI	RGGWCCY	2 cut(s)	2195, 2790
PscI	ACATGT	1 cut(s)	2345
Psp124BI	GAGCTC	1 cut(s)	1806
Psp5II	RGGWCCY	2 cut(s)	2195, 2790
PspFI	CCCAGC	1 cut(s)	2249
PspN4I	GGNNCC	4 cut(s)	357, 2196, 2697, 3271
PspPI	GGNCC	4 cut(s)	1205, 2195, 2790, 3368
PspPPI	RGGWCCY	2 cut(s)	2195, 2790
PsrI	GAACNNNNNNTAC	2 cut(s)	1728, 1760
PstI	CTGCAG	1 cut(s)	3376
PstNI	CAGNNNCTG	4 cut(s)	2249, 2669, 2866, 3371
PsuI	RGATCY	3 cut(s)	553, 1213, 1460
RsaI	GTAC	5 cut(s)	825, 1038, 2062, 2697, 3117
RsaNI	GTAC	5 cut(s)	824, 1037, 2061, 2696, 3116
RseI	CAYNNNNRTG	4 cut(s)	531, 1134, 1197, 2307
SacI	GAGCTC	1 cut(s)	1806
SaqAI	TTAA	6 cut(s)	267, 768, 1167, 1910, 2709, 3422
Sau96I	GGNCC	4 cut(s)	1205, 2195, 2790, 3368
ScaI	AGTACT	1 cut(s)	1038
SchI	GAGTC	1 cut(s)	422
SduI	GDGCHC	7 cut(s)	252, 1501, 1669, 1732, 1806, 2320, 3281
SfcI	CTRYAG	7 cut(s)	1009, 1224, 1563, 2879, 3372, 3399, 3406
SinI	GGWCC	3 cut(s)	1205, 2195, 2790
SmiMI	CAYNNNNRTG	4 cut(s)	531, 1134, 1197, 2307
SmlI	CTYRAG	4 cut(s)	767, 1154, 1604, 3485
SmoI	CTYRAG	4 cut(s)	767, 1154, 1604, 3485
SpeI	ACTAGT	1 cut(s)	650
SphI	GCATGC	1 cut(s)	965
SspI	AATATT	5 cut(s)	271, 1922, 1944, 2040, 2919
SspMI	CTAG	5 cut(s)	630, 651, 1217, 1238, 3081
SstI	GAGCTC	1 cut(s)	1806
StyI	CCWWGG	2 cut(s)	2689, 2775
TaaI	ACNGT	9 cut(s)	45, 305, 439, 1997, 2188, 3037, 3193, 3400, 3427
TaiI	ACGT	3 cut(s)	829, 3329, 3562
TaqI	TCGA	8 cut(s)	97, 787, 949, 988, 1374, 1893, 2320, 3103
TatI	WGTACW	1 cut(s)	1036
TauI	GCSGC	5 cut(s)	110, 177, 2249, 2633, 2938
Tru1I	TTAA	6 cut(s)	267, 768, 1167, 1910, 2709, 3422
Tru9I	TTAA	6 cut(s)	267, 768, 1167, 1910, 2709, 3422
TscAI	CASTG	8 cut(s)	310, 533, 2002, 2428, 2475, 2733, 3352, 3477
TseFI	GTSAC	3 cut(s)	53, 2341, 2684
Tsp45I	GTSAC	3 cut(s)	53, 2341, 2684
TspDTI	ATGAA	9 cut(s)	242, 1046, 1323, 1605, 1609, 1736, 2247, 2430, 3176
TspGWI	ACGGA	4 cut(s)	41, 122, 406, 3431
TspRI	CASTG	8 cut(s)	310, 533, 2002, 2428, 2475, 2733, 3352, 3477
Van91I	CCANNNNNTGG	3 cut(s)	801, 2828, 3220
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	3 cut(s)	1205, 2195, 2790
XapI	RAATTY	8 cut(s)	880, 1002, 1053, 1085, 2022, 2614, 3046, 3305
XceI	RCATGY	2 cut(s)	965, 2349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	3402
XmnI	GAANNNNTTC	1 cut(s)	1932
XspI	CTAG	5 cut(s)	630, 651, 1217, 1238, 3081
ZrmI	AGTACT	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.