Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008467

Physical Location & Seq

Genomic Coordinates Forward (+)

32225940 .. 32229867

Gene Structure 3928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAATTAACATTTAACACTATTATTAAGGGAGAACTCTCTGTCAAGGGTTTGGATGCTTCAGCAGAATCAAGTAAAGTTCTGGGATCTGATTTGTTGTTCAAGACCATGCAATCCTTGAGTGCTCCGAGAGAAATAATTGCGAAGGGTCTTGAAAGTGGCCTTAGAAATGATGCCTCTGATGCTGCAATAGCTATGCTCCAAAAGGATAGAACAAAATGCTTTTGGCGTCTTTGCGAGATTGGACTTGAGGGCCATTCATTCATTCTTCTAAGCAGATTCGCTAATGAGCTTGAAGCTATGGGAGGGGCTCATTGGTTGGCACAAGATGTGAAATCAAAGGATCTAAGCTCTTGGAATGATCCACTTGGTGCCCTTATAGTTGGTATTCATCAGCTAAGGTTATCTCGTTGGAAGCCTGAAGAATGTGCTGCTATTGAAAACGAGCTCCTTGCCTGGAAATCAAGAGGTCCTTCTGAAACAGAAGCGAGTGAAGATGGCAAAATAATCTGGGGATTAGGGCATAAAGCTACTCTCGATAGAGCCAGGAGGTTAACTCAAGAATATTCTGAAGCACTTCTTCAAATATTTCCCCAAAATGTCCAGGTATTAGGAAAAGCTTTTGGAATACCTGAAAACAGTGTGAGGACATACGCTGAAGCTGACATTCGTGCTGGTGTTGATGATATAGAGACACTATCGTTGTCTGACTTTCGACCTACAAATGCCATGCAGTGTAATATTTCAGGTTTCAAAATTGTGTACCCTACTTTTGAAAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

261

Amino Acids

28.82

Weight (kDa)

5.53

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26570 AT5G26570
fragaria_vesca	FvH4_4g12510 FvH4_4g12510
malus_domestica	MD04G1025900.v1.1
prunus_persica	Prupe.1G175200_v2.0.a1
pyrus_communis	pycom04g02200
rosa_chinensis	RchiOBHm_Chr4g0411251 RchiOBHm_Chr4g0411331
rosa_laevigata	RLG00000008365 RLG00000008368
rosa_multiflora	Rmu_sc0000543.1_g000027 Rmu_sc0000543.1_g000049
rosa_roxburghii	Rroxscaffold_5G00355910
rosa_rugosa	Rorug04G0110100
rosa_samantha	Rh4AG167100 Rh4BG163600 Rh4BG164200 Rh4CG178800 Rh4DG161900
rosa_wichuraiana	Rw4G013760 Rw4G013810 Rw4G013910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	94, 351, 356
AcuI	CTGAAG	4 cut(s)	45, 441, 591, 678
AcyI	GRCGYC	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	764
AgsI	TTSAA	7 cut(s)	103, 155, 296, 440, 584, 754, 776
AjnI	CCWGG	3 cut(s)	455, 545, 603
AluBI	AGCT	9 cut(s)	194, 292, 299, 351, 397, 448, 530, 620, 662
AluI	AGCT	9 cut(s)	194, 292, 299, 351, 397, 448, 530, 620, 662
Alw21I	GWGCWC	2 cut(s)	127, 450
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	3 cut(s)	94, 351, 356
AoxI	GGCC	2 cut(s)	160, 253
ApeKI	GCWGC	2 cut(s)	185, 431
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	253, 470
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	313, 450
Bbv12I	GWGCWC	2 cut(s)	127, 450
BbvI	GCAGC	2 cut(s)	172, 418
BccI	CCATC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	3 cut(s)	457, 547, 605
BcoDI	GTCTC	1 cut(s)	686
BisI	GCNGC	2 cut(s)	186, 432
BlsI	GCNGC	2 cut(s)	187, 433
Bme1390I	CCNGG	3 cut(s)	457, 547, 605
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	253, 470
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	3 cut(s)	457, 547, 605
BmsI	GCATC	3 cut(s)	46, 163, 172
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	3 cut(s)	139, 269, 543
BsaHI	GRCGYC	1 cut(s)	229
BseBI	CCWGG	3 cut(s)	457, 547, 605
BseGI	GGATG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	172, 418
BshFI	GGCC	2 cut(s)	162, 255
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	2 cut(s)	127, 450
BsmAI	GTCTC	1 cut(s)	686
BsnI	GGCC	2 cut(s)	162, 255
Bsp1286I	GDGCHC	4 cut(s)	127, 313, 376, 450
Bsp143I	GATC	3 cut(s)	86, 343, 361
BspANI	GGCC	2 cut(s)	162, 255
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	3 cut(s)	94, 351, 356
BspT107I	GGYRCC	1 cut(s)	371
BssMI	GATC	3 cut(s)	86, 343, 361
BssNI	GRCGYC	1 cut(s)	229
Bst2UI	CCWGG	3 cut(s)	457, 547, 605
Bst4CI	ACNGT	1 cut(s)	641
BstACI	GRCGYC	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	164, 272, 347, 398
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	89, 346, 364
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	3 cut(s)	86, 343, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 191
BstNI	CCWGG	3 cut(s)	457, 547, 605
BstSCI	CCNGG	3 cut(s)	455, 545, 603
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	172, 418
BstX2I	RGATCY	2 cut(s)	86, 343
BstYI	RGATCY	2 cut(s)	86, 343
BsuRI	GGCC	2 cut(s)	162, 255
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	646, 740
Cfr13I	GGNCC	2 cut(s)	253, 470
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	2 cut(s)	109, 730
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	4 cut(s)	164, 272, 347, 398
DpnI	GATC	3 cut(s)	88, 345, 363
DpnII	GATC	3 cut(s)	86, 343, 361
DraIII	CACNNNGTG	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	313, 450
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	4 cut(s)	45, 441, 591, 678
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	455, 545, 603
EcoT38I	GRGCYC	2 cut(s)	313, 450
FaeI	CATG	2 cut(s)	112, 733
FaiI	YATR	8 cut(s)	110, 197, 302, 380, 525, 652, 689, 731
FalI	AAGNNNNNCTT	4 cut(s)	457, 489, 564, 596
FatI	CATG	2 cut(s)	108, 729
Fnu4HI	GCNGC	2 cut(s)	186, 432
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	313, 450
Fsp4HI	GCNGC	2 cut(s)	186, 432
GluI	GCNGC	2 cut(s)	186, 432
HaeIII	GGCC	2 cut(s)	162, 255
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	112, 733
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	2 cut(s)	68, 279
HpaI	GTTAAC	1 cut(s)	555
Hpy166II	GTNNAC	2 cut(s)	555, 763
Hpy188I	TCNGA	6 cut(s)	91, 129, 181, 478, 571, 709
Hpy188III	TCNNGA	5 cut(s)	103, 152, 465, 536, 560
Hpy8I	GTNNAC	2 cut(s)	555, 763
HpyAV	CCTTC	2 cut(s)	139, 483
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4V	TGCA	3 cut(s)	112, 188, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 191
HpyF3I	CTNAG	4 cut(s)	164, 272, 347, 398
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	112, 733
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	3 cut(s)	86, 343, 361
LmnI	GCTCC	3 cut(s)	130, 204, 453
Lsp1109I	GCAGC	2 cut(s)	172, 418
LweI	GCATC	3 cut(s)	46, 163, 172
MalI	GATC	3 cut(s)	88, 345, 363
MboI	GATC	3 cut(s)	86, 343, 361
MboII	GAAGA	4 cut(s)	260, 434, 506, 572
MflI	RGATCY	2 cut(s)	86, 343
MhlI	GDGCHC	4 cut(s)	127, 313, 376, 450
MluCI	AATT	3 cut(s)	5, 138, 756
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	187, 244, 299, 461, 543, 639
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	4 cut(s)	8, 15, 27, 554
MspR9I	CCNGG	3 cut(s)	457, 547, 605
MvaI	CCWGG	3 cut(s)	457, 547, 605
MwoI	GCNNNNNNNGC	2 cut(s)	182, 191
NdeII	GATC	3 cut(s)	86, 343, 361
NlaIII	CATG	2 cut(s)	112, 733
NlaIV	GGNNCC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	68, 279
PkrI	GCNGC	2 cut(s)	187, 433
PpuMI	RGGWCCY	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	3 cut(s)	455, 545, 603
PspGI	CCWGG	3 cut(s)	455, 545, 603
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	253, 470
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	86, 343
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	8, 15, 27, 554
SatI	GCNGC	2 cut(s)	186, 432
Sau3AI	GATC	3 cut(s)	86, 343, 361
Sau96I	GGNCC	2 cut(s)	253, 470
ScrFI	CCNGG	3 cut(s)	457, 547, 605
SduI	GDGCHC	4 cut(s)	127, 313, 376, 450
SfaNI	GCATC	3 cut(s)	46, 163, 172
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	3 cut(s)	118, 248, 558
SmoI	CTYRAG	3 cut(s)	118, 248, 558
Sse9I	AATT	3 cut(s)	5, 138, 756
SspI	AATATT	3 cut(s)	566, 588, 742
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	455, 545, 603
TaaI	ACNGT	1 cut(s)	641
TaqI	TCGA	2 cut(s)	537, 715
TasI	AATT	3 cut(s)	5, 138, 756
TfiI	GAWTC	2 cut(s)	68, 279
Tru1I	TTAA	4 cut(s)	8, 15, 27, 554
Tru9I	TTAA	4 cut(s)	8, 15, 27, 554
TscAI	CASTG	2 cut(s)	646, 740
TseI	GCWGC	2 cut(s)	185, 431
TspDTI	ATGAA	4 cut(s)	17, 249, 253, 380
TspRI	CASTG	2 cut(s)	646, 740
VpaK11BI	GGWCC	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.