Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008467

Physical Location & Seq

Genomic Coordinates Forward (+)

29574674 .. 29576541

Gene Structure 1868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAATCCTTGAGTGCTCCGAGAGAAATAATTGCAAAGGGTCTTGAAAGTAGCCTTAGAAATGATGCCTCTGATGCTGCAATAGCTATGCGCCAAAAGTGGCGTCTTTGCGAGATTGGACTTGAGGACTATTCATTCATTCTTCGAAGCAGATTCGCTAATGAGCTTGAAGCTATGGGAGGGGCTCATTGGCTGGCACAAGATGTGAAATCAAAGGATCTAAGCTCTTGGAATGATCCACTTGGTGCTCTTATAGTTGGTGTTCATCAGCTAAGGTTATCTCGTTGGAAGCCTGAAGAATGTGCTGCTATTGAAAACGAGCTCCTTTCCTGGAAATCAAGAGGTCTTTCTGAAACAGAAGCGAGTGAAGATGGCAAAATAATCTGGGGACTACGGCATAAAGCTACTCTCGATAGAGCCAGGAGGTTAACTGAAGAATATTCTGAAGCACTTCTTCACATATTTCCCCAAAATGTCCAGTTATTAGGAAAAGCTTTTGGAATACCTGAGAACAGTGTGAGGACATACGCTGAAGCTGAAATTAGCGCTGGTGTTGATGATAATCATGATATAGAGACACTATCGTTGTCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

199

Amino Acids

22.32

Weight (kDa)

5.11

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26570 AT5G26570
fragaria_vesca	FvH4_4g12510 FvH4_4g12510
malus_domestica	MD04G1025900.v1.1
prunus_persica	Prupe.1G175200_v2.0.a1
pyrus_communis	pycom04g02200
rosa_chinensis	RchiOBHm_Chr4g0411251 RchiOBHm_Chr4g0411331
rosa_laevigata	RLG00000008365 RLG00000008368
rosa_multiflora	Rmu_sc0000543.1_g000027 Rmu_sc0000543.1_g000049
rosa_roxburghii	Rroxscaffold_5G00355910
rosa_rugosa	Rorug04G0110100
rosa_samantha	Rh4AG167100 Rh4BG163600 Rh4BG164200 Rh4CG178800 Rh4DG161900
rosa_wichuraiana	Rw4G013760 Rw4G013810 Rw4G013910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	225, 230
AcuI	CTGAAG	4 cut(s)	315, 453, 465, 552
AcyI	GRCGYC	1 cut(s)	103
AdeI	CACNNNGTG	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	47, 170, 314
AjnI	CCWGG	2 cut(s)	329, 419
AluBI	AGCT	9 cut(s)	86, 166, 173, 225, 271, 322, 404, 494, 536
AluI	AGCT	9 cut(s)	86, 166, 173, 225, 271, 322, 404, 494, 536
Alw21I	GWGCWC	3 cut(s)	19, 250, 324
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	225, 230
Aor51HI	AGCGCT	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	77, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	2 cut(s)	93, 548
AsuII	TTCGAA	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	187, 324
Bbv12I	GWGCWC	3 cut(s)	19, 250, 324
BbvI	GCAGC	2 cut(s)	64, 292
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	2 cut(s)	331, 421
BcoDI	GTCTC	1 cut(s)	569
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	2 cut(s)	78, 306
BlsI	GCNGC	2 cut(s)	79, 307
Bme1390I	CCNGG	2 cut(s)	331, 421
BmrFI	CCNGG	2 cut(s)	331, 421
BmsI	GCATC	2 cut(s)	55, 64
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	145
BpuEI	CTTGAG	2 cut(s)	31, 143
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	331, 421
BseJI	GATNNNNATC	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	64, 292
BsiHKAI	GWGCWC	3 cut(s)	19, 250, 324
BslFI	GGGAC	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	4 cut(s)	19, 187, 250, 324
Bsp143I	GATC	2 cut(s)	217, 235
BspCNI	CTCAG	1 cut(s)	499
BspHI	TCATGA	1 cut(s)	565
BspPI	GGATC	2 cut(s)	225, 230
BspT104I	TTCGAA	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	217, 235
BssNI	GRCGYC	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	331, 421
Bst4CI	ACNGT	1 cut(s)	515
BstACI	GRCGYC	1 cut(s)	103
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	56, 221, 272, 507
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	93, 548
BstKTI	GATC	2 cut(s)	220, 238
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	2 cut(s)	217, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstNI	CCWGG	2 cut(s)	331, 421
BstSCI	CCNGG	2 cut(s)	329, 419
BstV1I	GCAGC	2 cut(s)	64, 292
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	195
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	2 cut(s)	93, 548
CseI	GACGC	1 cut(s)	92
CviAII	CATG	1 cut(s)	566
DdeI	CTNAG	4 cut(s)	56, 221, 272, 507
DpnI	GATC	2 cut(s)	219, 237
DpnII	GATC	2 cut(s)	217, 235
DraIII	CACNNNGTG	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	187, 324
Eco47III	AGCGCT	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	4 cut(s)	315, 453, 465, 552
EcoICRI	GAGCTC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	329, 419
EcoT38I	GRGCYC	2 cut(s)	187, 324
FaeI	CATG	1 cut(s)	569
FaiI	YATR	8 cut(s)	89, 176, 254, 399, 461, 526, 567, 572
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	78, 306
FriOI	GRGCYC	2 cut(s)	187, 324
Fsp4HI	GCNGC	2 cut(s)	78, 306
GlaI	GCGC	2 cut(s)	92, 547
GluI	GCNGC	2 cut(s)	78, 306
HaeII	RGCGCY	1 cut(s)	549
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	93, 548
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	569
Hin6I	GCGC	2 cut(s)	91, 546
HinP1I	GCGC	2 cut(s)	91, 546
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	1 cut(s)	153
HpaI	GTTAAC	1 cut(s)	429
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	5 cut(s)	21, 73, 352, 445, 592
Hpy188III	TCNNGA	4 cut(s)	44, 339, 410, 566
Hpy8I	GTNNAC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4V	TGCA	3 cut(s)	4, 35, 80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	4 cut(s)	56, 221, 272, 507
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	569
HspAI	GCGC	2 cut(s)	91, 546
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	217, 235
LmnI	GCTCC	2 cut(s)	22, 327
Lsp1109I	GCAGC	2 cut(s)	64, 292
LweI	GCATC	2 cut(s)	55, 64
MalI	GATC	2 cut(s)	219, 237
MboI	GATC	2 cut(s)	217, 235
MboII	GAAGA	5 cut(s)	134, 308, 380, 446, 446
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	4 cut(s)	19, 187, 250, 324
MluCI	AATT	2 cut(s)	30, 540
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	6 cut(s)	79, 118, 173, 335, 417, 513
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	331, 421
MvaI	CCWGG	2 cut(s)	331, 421
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NdeII	GATC	2 cut(s)	217, 235
NlaIII	CATG	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	145
PagI	TCATGA	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	79, 307
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	329, 419
PspGI	CCWGG	2 cut(s)	329, 419
PsuI	RGATCY	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	78, 306
Sau3AI	GATC	2 cut(s)	217, 235
ScrFI	CCNGG	2 cut(s)	331, 421
SduI	GDGCHC	4 cut(s)	19, 187, 250, 324
SfaNI	GCATC	2 cut(s)	55, 64
SfuI	TTCGAA	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	10, 122
SmoI	CTYRAG	2 cut(s)	10, 122
Sse9I	AATT	2 cut(s)	30, 540
SspI	AATATT	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	329, 419
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	145, 411
TasI	AATT	2 cut(s)	30, 540
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	2 cut(s)	77, 305
TspDTI	ATGAA	3 cut(s)	123, 127, 254
TspRI	CASTG	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.