RchiOBHm_Chr4g0443141

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
64433696 .. 64434746
1051 bp
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UTR
Exon/CDS
Intron
PRQ41086

Sequence Viewer

Length: 180 bp
ATGACGAACGATCCGATCACGGTGGATATCGGAAACTGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCTCCTCAGTCGCAGCCCAAATCTACTGGAATTTTTGATTTGCCGTCGCCAGATTCAGTGTCAATTGATCATAGTTTATCAAATCCTGCCATATCTCGCCCAAAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.86

Weight (kDa)

7.71

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 98
AlwI GGATC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 98
BbvCI CCTCAGC 2 cut(s) 47, 53
BbvI GCAGC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 96
BclI TGATCA 1 cut(s) 135
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 2 cut(s) 47, 53
Bse1I ACTGG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 61, 67, 88
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 2 cut(s) 35, 62
BseXI GCAGC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 10, 15, 135
BspCNI CTCAG 3 cut(s) 60, 66, 87
BspPI GGATC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 99
BssMI GATC 3 cut(s) 10, 15, 135
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 47, 53, 74
BstKTI GATC 3 cut(s) 13, 18, 138
BstMBI GATC 3 cut(s) 10, 15, 135
BstV1I GCAGC 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 131
CviJI RGCY 2 cut(s) 51, 84
CviKI_1 RGCY 2 cut(s) 51, 84
DdeI CTNAG 3 cut(s) 47, 53, 74
DpnI GATC 3 cut(s) 12, 17, 137
DpnII GATC 3 cut(s) 10, 15, 135
Eco32I GATATC 1 cut(s) 28
EcoRV GATATC 1 cut(s) 28
FaiI YATR 2 cut(s) 140, 160
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HinfI GANTC 2 cut(s) 63, 121
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 15, 32
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 22
HpyF3I CTNAG 3 cut(s) 47, 53, 74
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 10, 15, 135
LpnPI CCDG 3 cut(s) 80, 131, 167
Lsp1109I GCAGC 1 cut(s) 93
MalI GATC 3 cut(s) 12, 17, 137
MboI GATC 3 cut(s) 10, 15, 135
MfeI CAATTG 1 cut(s) 131
MluCI AATT 2 cut(s) 98, 131
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 5 cut(s) 53, 56, 62, 80, 83
MunI CAATTG 1 cut(s) 131
NdeII GATC 3 cut(s) 10, 15, 135
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 3 cut(s) 10, 15, 135
SchI GAGTC 1 cut(s) 72
SetI ASST 2 cut(s) 72, 177
SgeI CNNG 5 cut(s) 31, 107, 130, 166, 176
Sse9I AATT 2 cut(s) 98, 131
TaaI ACNGT 1 cut(s) 22
TasI AATT 2 cut(s) 98, 131
TfiI GAWTC 1 cut(s) 121
TscAI CASTG 1 cut(s) 131
TseI GCWGC 1 cut(s) 81
TspRI CASTG 1 cut(s) 131
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.