Rh6DG275500

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012693
Physical Location & Seq
Reverse (-)
46905704 .. 46905979
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG275500.1

Sequence Viewer

Length: 276 bp
ATGCTCAACCATGGCTTCTCCGACTCTGCCTCCATTAGCTGCTTGCTCGGCCTAGACGACGGCGGCAGCGTGAACAATTCGGATTCGAGAGGAGGAGAAGCAGAGGCTTCTGCGGCGGTGAATTGCAGGATCAGAAGTCGTTTGGGTCAACATCGTCATCTTCGTCGTTGGCGAATTTTCCTCCGATTCGGCTCCACGTGGAAGATGGCGGTGGGAGTAGTCGCGGTGGGAATAAAGCGCAAGATCAGAAGGTTGGGATTGGAGCAGTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

91

Amino Acids

10.03

Weight (kDa)

11.34

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 5 cut(s) 63, 113, 116, 209, 224
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 174
AcvI CACGTG 1 cut(s) 198
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 1 cut(s) 137
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 39, 66
ApoI RAATTY 1 cut(s) 174
AspLEI GCGC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 130
BbrPI CACGTG 1 cut(s) 198
BbvI GCAGC 2 cut(s) 26, 78
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 76
BfaI CTAG 1 cut(s) 53
BisI GCNGC 4 cut(s) 40, 64, 67, 114
BlsI GCNGC 4 cut(s) 41, 65, 68, 115
BmiI GGNNCC 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
BseDI CCNNGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 105, 108
BseXI GCAGC 2 cut(s) 26, 78
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 129, 243
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 5 cut(s) 63, 113, 116, 209, 224
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 129, 243
BssT1I CCWWGG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 132, 246
BstMBI GATC 2 cut(s) 129, 243
BstMWI GCNNNNNNNGC 2 cut(s) 48, 113
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 26, 78
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 240
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 15, 39, 51, 107, 192
CviKI_1 RGCY 5 cut(s) 15, 39, 51, 107, 192
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 131, 245
DpnII GATC 2 cut(s) 129, 243
Eco130I CCWWGG 1 cut(s) 10
Eco72I CACGTG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 14
FaiI YATR 1 cut(s) 12
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 40, 64, 67, 114
Fsp4HI GCNGC 4 cut(s) 40, 64, 67, 114
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 239
GluI GCNGC 4 cut(s) 40, 64, 67, 114
HaeIII GGCC 1 cut(s) 51
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HinfI GANTC 3 cut(s) 23, 83, 186
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 73, 149
Hpy188I TCNGA 5 cut(s) 22, 82, 134, 185, 248
Hpy188III TCNNGA 1 cut(s) 87
Hpy8I GTNNAC 2 cut(s) 73, 149
Hpy99I CGWCG 2 cut(s) 62, 168
HpyAV CCTTC 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 113
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 129, 243
LmnI GCTCC 2 cut(s) 197, 262
LpnPI CCDG 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 26, 78
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 197
MalI GATC 2 cut(s) 131, 245
MboI GATC 2 cut(s) 129, 243
MboII GAAGA 2 cut(s) 152, 214
MluCI AATT 3 cut(s) 76, 121, 174
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 40, 83, 86, 97, 191
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 48, 113
NcoI CCATGG 1 cut(s) 10
NdeII GATC 2 cut(s) 129, 243
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 66, 160, 169
PfeI GAWTC 2 cut(s) 83, 186
PkrI GCNGC 4 cut(s) 41, 65, 68, 115
PleI GAGTC 1 cut(s) 17
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
PpsI GAGTC 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 198
PspCI CACGTG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 193
SatI GCNGC 4 cut(s) 40, 64, 67, 114
Sau3AI GATC 2 cut(s) 129, 243
SchI GAGTC 1 cut(s) 17
SetI ASST 3 cut(s) 41, 200, 254
Sse9I AATT 3 cut(s) 76, 121, 174
SsiI CCGC 5 cut(s) 63, 113, 116, 209, 224
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 10
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 76, 121, 174
TauI GCSGC 2 cut(s) 66, 116
TfiI GAWTC 2 cut(s) 83, 186
TseI GCWGC 2 cut(s) 39, 66
XapI RAATTY 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.