Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012693

Physical Location & Seq

Genomic Coordinates Forward (+)

31048302 .. 31048751

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTCGACCGTGGCTTCTCCGACTCCGACTCCGCCTCTGTTAACTGCTTGCTCGGCCTAGACTACGGCGGCGGCGCCGCCGCGAACAATTCAGATTCAAGAGGAGGAGAAGCGGAGGCTTTTGCGGCGGCGAATTGTAGGATCAGAAGTCGTTTGGGTCAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACGGCGGTGGGAGTAGTCGCGGTGGAAATAAAGCGTAGGATTAGAAGGTTGGGATTGGAGCAGTTTGCTCAGATGACGAACGATCCGATCACAGTGGATATCGGAAACTGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCTCCTCAGTCGCAGCCAAAATCTACTGGAATTTTTGATTTTTCGTCGCCAGATTCAGTGTCAATGTATGCTTTGCTTGTCACCTACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

149

Amino Acids

16.72

Weight (kDa)

9.87

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012693)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0443141 RchiOBHm_Chr6g0284841
rosa_laevigata	RLG00000008014 RLG00000012711 RLG00000034684
rosa_roxburghii	Rroxscaffold_1G00068590
rosa_rugosa	Rorug06G0167400
rosa_samantha	Rh2AG448000 Rh3BG307600 Rh4BG390400 Rh4CG426100 Rh5BG126000 Rh6AG280100 Rh6BG280200 Rh6BG370100 Rh6CG282400 Rh6DG259200 Rh6DG275300 Rh6DG275500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	83, 236
AclWI	GGATC	2 cut(s)	149, 293
AcsI	RAATTY	2 cut(s)	186, 386
AcvI	CACGTG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	149, 293
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	2 cut(s)	186, 386
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	221
BbvCI	CCTCAGC	2 cut(s)	335, 341
BbvI	GCAGC	1 cut(s)	381
BceAI	ACGGC	2 cut(s)	82, 234
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	7 cut(s)	70, 73, 78, 81, 126, 129, 370
BlsI	GCNGC	7 cut(s)	71, 74, 79, 82, 127, 130, 371
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	76, 205
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
Bpu10I	CCTNAGC	2 cut(s)	335, 341
BsaAI	YACGTR	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	10
BseMII	CTCAG	4 cut(s)	299, 349, 355, 376
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	4 cut(s)	117, 120, 323, 350
BseXI	GCAGC	1 cut(s)	381
Bsh1236I	CGCG	2 cut(s)	83, 236
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	141, 298, 303
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	4 cut(s)	298, 348, 354, 375
BspFNI	CGCG	2 cut(s)	83, 236
BspLI	GGNNCC	2 cut(s)	76, 205
BspPI	GGATC	2 cut(s)	149, 293
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	141, 298, 303
BssNI	GRCGYC	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	11, 310
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	50, 182
BstDEI	CTNAG	4 cut(s)	285, 335, 341, 362
BstDSI	CCRYGG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	83, 236
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	144, 301, 306
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	141, 298, 303
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 125
BstUI	CGCG	2 cut(s)	83, 236
BstV1I	GCAGC	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	315, 419
Cac8I	GCNNGC	2 cut(s)	50, 182
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	204
CviJI	RGCY	5 cut(s)	15, 57, 119, 339, 372
CviKI_1	RGCY	5 cut(s)	15, 57, 119, 339, 372
DdeI	CTNAG	4 cut(s)	285, 335, 341, 362
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	3 cut(s)	143, 300, 305
DpnII	GATC	3 cut(s)	141, 298, 303
EciI	GGCGGA	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	316
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	176
FaiI	YATR	1 cut(s)	425
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	7 cut(s)	70, 73, 78, 81, 126, 129, 370
Fsp4HI	GCNGC	7 cut(s)	70, 73, 78, 81, 126, 129, 370
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	7 cut(s)	70, 73, 78, 81, 126, 129, 370
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	2 cut(s)	43, 161
HindII	GTYRAC	2 cut(s)	43, 161
HinfI	GANTC	6 cut(s)	23, 29, 95, 198, 351, 409
HpaI	GTTAAC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	429
Hpy166II	GTNNAC	4 cut(s)	43, 161, 207, 355
Hpy188I	TCNGA	8 cut(s)	22, 28, 94, 146, 197, 288, 303, 320
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	4 cut(s)	43, 161, 207, 355
Hpy99I	CGWCG	3 cut(s)	171, 180, 405
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	11, 310
HpyCH4IV	ACGT	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 125
HpyF3I	CTNAG	4 cut(s)	285, 335, 341, 362
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	75
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	141, 298, 303
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	3 cut(s)	166, 368, 419
Lsp1109I	GCAGC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	3 cut(s)	143, 300, 305
MboI	GATC	3 cut(s)	141, 298, 303
MboII	GAAGA	1 cut(s)	226
MluCI	AATT	4 cut(s)	88, 133, 186, 386
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	3 cut(s)	17, 23, 360
MmeI	TCCRAC	2 cut(s)	45, 51
MseI	TTAA	1 cut(s)	42
MvnI	CGCG	2 cut(s)	83, 236
MwoI	GCNNNNNNNGC	2 cut(s)	54, 125
NarI	GGCGCC	1 cut(s)	75
NdeII	GATC	3 cut(s)	141, 298, 303
NlaIV	GGNNCC	2 cut(s)	76, 205
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	172, 299
PfeI	GAWTC	3 cut(s)	95, 198, 409
PkrI	GCNGC	7 cut(s)	71, 74, 79, 82, 127, 130, 371
PleI	GAGTC	3 cut(s)	17, 23, 359
PluTI	GGCGCC	1 cut(s)	78
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	3 cut(s)	17, 23, 359
Ppu21I	YACGTR	1 cut(s)	210
PspCI	CACGTG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	76, 205
PspPI	GGNCC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	7 cut(s)	70, 73, 78, 81, 126, 129, 370
Sau3AI	GATC	3 cut(s)	141, 298, 303
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	3 cut(s)	17, 23, 360
SetI	ASST	4 cut(s)	212, 266, 360, 442
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	4 cut(s)	88, 133, 186, 386
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	11, 310
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	88, 133, 186, 386
TauI	GCSGC	6 cut(s)	72, 75, 80, 83, 128, 131
TfiI	GAWTC	3 cut(s)	95, 198, 409
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	315, 419
TseFI	GTSAC	1 cut(s)	435
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	315, 419
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	186, 386
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.