Rh2AG448000

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012693
Physical Location & Seq
Reverse (-)
66120610 .. 66120876
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG448000.1

Sequence Viewer

Length: 267 bp
ATGCTCAACCGTGGCTTCTCCGACTTCACCTCCGTTAATTGCTTGCTGGGCCTAAACTATGGTGGCTGCAGTGCCGCGAACAATTCAGATTCGAGAGGAGGAGAAGCGGAGGCTTCTGCGGCGGCGAATTGCAGGATCAGAAGTCGTTTGGGTCAACATCGTTGTCTCCGTCACTGGAGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACGGCGGTGGGAATAGAGCGCAGGATCAGAAGGTTGGGATTGGAGCAGTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

88

Amino Acids

9.79

Weight (kDa)

10.61

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 5 cut(s) 75, 107, 119, 122, 215
AclWI GGATC 2 cut(s) 143, 242
AcsI RAATTY 1 cut(s) 180
AcvI CACGTG 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 143, 242
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 49, 198
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 198
BbrPI CACGTG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 4 cut(s) 67, 75, 120, 123
BlsI GCNGC 4 cut(s) 68, 76, 121, 124
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 49, 198
BmiI GGNNCC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse1I ACTGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 111, 114
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 135, 234
BspACI CCGC 5 cut(s) 75, 107, 119, 122, 215
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 71
BspPI GGATC 2 cut(s) 143, 242
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 135, 234
Bst4CI ACNGT 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 138, 237
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 135, 234
BstMWI GCNNNNNNNGC 2 cut(s) 48, 119
BstSFI CTRYAG 1 cut(s) 67
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 76, 172
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 49, 198
CviJI RGCY 4 cut(s) 15, 51, 66, 113
CviKI_1 RGCY 4 cut(s) 15, 51, 66, 113
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 137, 236
DpnII GATC 2 cut(s) 135, 234
Eco47I GGWCC 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 204
FaiI YATR 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 67, 75, 120, 123
Fsp4HI GCNGC 4 cut(s) 67, 75, 120, 123
GlaI GCGC 1 cut(s) 230
GluI GCNGC 4 cut(s) 67, 75, 120, 123
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 51
HhaI GCGC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 2 cut(s) 89, 192
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 155, 201
Hpy188I TCNGA 5 cut(s) 22, 88, 140, 191, 239
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 2 cut(s) 155, 201
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 69, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 119
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 203
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 135, 234
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 4 cut(s) 32, 118, 160, 217
Lsp1109I GCAGC 1 cut(s) 53
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 137, 236
MboI GATC 2 cut(s) 135, 234
MboII GAAGA 1 cut(s) 220
MluCI AATT 4 cut(s) 37, 82, 127, 180
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 40, 89, 92, 103, 197
MseI TTAA 1 cut(s) 36
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 48, 119
NdeII GATC 2 cut(s) 135, 234
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 2 cut(s) 89, 192
PkrI GCNGC 4 cut(s) 68, 76, 121, 124
PmaCI CACGTG 1 cut(s) 204
PmlI CACGTG 1 cut(s) 204
Ppu21I YACGTR 1 cut(s) 204
PspCI CACGTG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 49, 198
PstI CTGCAG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 4 cut(s) 67, 75, 120, 123
Sau3AI GATC 2 cut(s) 135, 234
Sau96I GGNCC 2 cut(s) 49, 198
SetI ASST 3 cut(s) 32, 206, 245
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 198
Sse9I AATT 4 cut(s) 37, 82, 127, 180
SsiI CCGC 5 cut(s) 75, 107, 119, 122, 215
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 92
TasI AATT 4 cut(s) 37, 82, 127, 180
TauI GCSGC 3 cut(s) 77, 122, 125
TfiI GAWTC 2 cut(s) 89, 192
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 2 cut(s) 76, 179
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 170
TspGWI ACGGA 2 cut(s) 22, 158
TspRI CASTG 2 cut(s) 76, 179
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.