RLG00000008014

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012693
Physical Location & Seq
Reverse (-)
24268974 .. 24269874
901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008014

Sequence Viewer

Length: 507 bp
ATGGCCACATCGTGTCGCAGCCTCATGACAAGTCGTTATGCTACATCGGCAGCGACACTTGAATCATCGTCGTGGACAGGAACACTTCGCTCGTGGACCTCTGGAATCTCAACCGTGGCTTCTGACTCCACCTCCGTTAATTACTTGCTCAGCCTAGATGACTGCGGCGCCGCGAACAATTCAAAGGTTGGGATTAGAAGTCGTTTGGGTCAACATCGTCGTCTCCATCGCTGGCAAATTTGCCTCCAATTTGGGTCCACGTGGAAGACGGTGGTGGGAGTAGTCGCGGTGGGAATAGGGCGCAGGATCAAAAGTGAACATAGTTTATCAAATGTTGCCATATCTCGCCCAGAACTTGTAATTTATCAAGAACCAGTAGCTCAAATACCCGTTGTAAGCCCCACAAGGTTTCCTGCAAACCTTGTTGATCTGAGAGTTAATGTCTCGAATTCAGATGCAACAACCGGTTCAAGATTCCGGGTATGTAGTGGGAGGGGGCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

169

Amino Acids

18.23

Weight (kDa)

10.52

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 2 cut(s) 173, 287
AciI CCGC 3 cut(s) 165, 171, 287
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 237, 448
AcvI CACGTG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 12
AgeI ACCGGT 1 cut(s) 464
AgsI TTSAA 3 cut(s) 62, 183, 471
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 227, 448
AlwI GGATC 1 cut(s) 314
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 18, 50
ApoI RAATTY 2 cut(s) 237, 448
AsiGI ACCGGT 1 cut(s) 464
AspLEI GCGC 2 cut(s) 170, 303
AspS9I GGNCC 2 cut(s) 96, 255
AsuC2I CCSGG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 96, 255
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 167
BauI CACGAG 1 cut(s) 91
BbrPI CACGTG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 30, 62
BccI CCATC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 227, 448
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 4 cut(s) 19, 51, 166, 171
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 4 cut(s) 20, 52, 167, 172
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 2 cut(s) 96, 255
BmgT120I GGNCC 2 cut(s) 96, 255
BmiI GGNNCC 2 cut(s) 169, 256
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 163, 422
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 30, 62
Bsh1236I CGCG 2 cut(s) 173, 287
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 464
BsiSI CCGG 2 cut(s) 465, 478
BsmAI GTCTC 2 cut(s) 227, 448
BsmBI CGTCTC 1 cut(s) 227
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 306, 427
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 3 cut(s) 165, 171, 287
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 162, 423
BspFNI CGCG 2 cut(s) 173, 287
BspHI TCATGA 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 169, 256
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 306, 427
BssNI GRCGYC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 115, 271
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 149, 431
BstDSI CCRYGG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 173, 287
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 170, 303
BstKTI GATC 2 cut(s) 309, 430
BstMAI GTCTC 2 cut(s) 227, 448
BstMBI GATC 2 cut(s) 306, 427
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 2 cut(s) 173, 287
BstV1I GCAGC 2 cut(s) 30, 62
BstV2I GAAGAC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 24
CfoI GCGC 2 cut(s) 170, 303
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 96, 255
CspAI ACCGGT 1 cut(s) 464
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 5, 21, 119, 153, 380, 399
CviKI_1 RGCY 6 cut(s) 5, 21, 119, 153, 380, 399
DdeI CTNAG 2 cut(s) 149, 431
DinI GGCGCC 1 cut(s) 169
DpnI GATC 2 cut(s) 308, 429
DpnII GATC 2 cut(s) 306, 427
DraIII CACNNNGTG 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 2 cut(s) 96, 255
Eco72I CACGTG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 448
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 1 cut(s) 28
FaiI YATR 5 cut(s) 26, 39, 321, 341, 484
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 19, 51, 166, 171
Fsp4HI GCNGC 4 cut(s) 19, 51, 166, 171
FspBI CTAG 1 cut(s) 155
GlaI GCGC 2 cut(s) 169, 302
GluI GCNGC 4 cut(s) 19, 51, 166, 171
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 465, 478
HhaI GCGC 2 cut(s) 170, 303
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 2 cut(s) 168, 301
HinP1I GCGC 2 cut(s) 168, 301
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 4 cut(s) 62, 105, 125, 474
HpaII CCGG 2 cut(s) 465, 478
Hpy166II GTNNAC 5 cut(s) 75, 96, 212, 258, 317
Hpy188I TCNGA 3 cut(s) 124, 432, 454
Hpy188III TCNNGA 5 cut(s) 25, 102, 368, 445, 471
Hpy8I GTNNAC 5 cut(s) 75, 96, 212, 258, 317
Hpy99I CGWCG 2 cut(s) 73, 222
HpyCH4III ACNGT 2 cut(s) 115, 271
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 416, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 149, 431
HpySE526I ACGT 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 2 cut(s) 168, 301
KasI GGCGCC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 306, 427
LpnPI CCDG 9 cut(s) 63, 87, 217, 289, 363, 387, 426, 478, 491
Lsp1109I GCAGC 2 cut(s) 30, 62
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 260
MalI GATC 2 cut(s) 308, 429
MboI GATC 2 cut(s) 306, 427
MboII GAAGA 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 139, 178, 237, 248, 360, 448
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 5 cut(s) 32, 109, 142, 254, 486
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 138, 438
MslI CAYNNNNRTG 1 cut(s) 70
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 465, 478
MspR9I CCNGG 1 cut(s) 479
MvnI CGCG 2 cut(s) 173, 287
MwoI GCNNNNNNNGC 1 cut(s) 47
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 1 cut(s) 479
NdeII GATC 2 cut(s) 306, 427
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 169, 256
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 3 cut(s) 62, 105, 474
PinAI ACCGGT 1 cut(s) 464
PkrI GCNGC 4 cut(s) 20, 52, 167, 172
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 171
PmaCI CACGTG 1 cut(s) 261
PmlI CACGTG 1 cut(s) 261
PpsI GAGTC 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 261
PspCI CACGTG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 169, 256
PspPI GGNCC 2 cut(s) 96, 255
RseI CAYNNNNRTG 1 cut(s) 70
SaqAI TTAA 2 cut(s) 138, 438
SatI GCNGC 4 cut(s) 19, 51, 166, 171
Sau3AI GATC 2 cut(s) 306, 427
Sau96I GGNCC 2 cut(s) 96, 255
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 479
SetI ASST 7 cut(s) 101, 134, 189, 263, 382, 410, 423
SfaNI GCATC 1 cut(s) 445
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 2 cut(s) 96, 255
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 6 cut(s) 139, 178, 237, 248, 360, 448
SsiI CCGC 3 cut(s) 165, 171, 287
SspDI GGCGCC 1 cut(s) 167
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 115, 271
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 446
TasI AATT 6 cut(s) 139, 178, 237, 248, 360, 448
TauI GCSGC 2 cut(s) 168, 173
TfiI GAWTC 3 cut(s) 62, 105, 474
Tru1I TTAA 2 cut(s) 138, 438
Tru9I TTAA 2 cut(s) 138, 438
TseI GCWGC 2 cut(s) 18, 50
TspGWI ACGGA 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 96, 255
XapI RAATTY 2 cut(s) 237, 448
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.