Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012693

Physical Location & Seq

Genomic Coordinates Forward (+)

45025919 .. 45026305

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTTCTCCGACTATGCCTCTGTTAACTGCTTGCGCGGCGGCGGCGATGGTGGCGCCACGAACAATTAGGATTCGAGAGGAGGAGACGCGGAGGCTGAATTGCAGGATCAGAAGTCATTTGGGTCCACATCGTCGTCTCCGTCGTTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACTGCTGTGGGAGTAGTCGCGGTGGGAATAGAGCACAGGATCAGAAGGTTGGGATTGGAGCAGTTTGCTCAGATAACGAACGATCCGATCACGGTGGATATCAGAACTGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCTCCTCAGTCGCAGCCCAATTCTACTGGAATTTTTTATTTGCCGTCGCTAGATATAGTGTCAAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

11.47

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012693)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0443141 RchiOBHm_Chr6g0284841
rosa_laevigata	RLG00000008014 RLG00000012711 RLG00000034684
rosa_roxburghii	Rroxscaffold_1G00068590
rosa_rugosa	Rorug06G0167400
rosa_samantha	Rh2AG448000 Rh3BG307600 Rh4BG390400 Rh4CG426100 Rh5BG126000 Rh6AG280100 Rh6BG280200 Rh6BG370100 Rh6CG282400 Rh6DG259200 Rh6DG275300 Rh6DG275500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	3 cut(s)	38, 91, 203
AciI	CCGC	5 cut(s)	38, 41, 44, 91, 203
AclWI	GGATC	3 cut(s)	116, 230, 260
AcsI	RAATTY	2 cut(s)	153, 352
AcvI	CACGTG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	80, 143
AlwI	GGATC	3 cut(s)	116, 230, 260
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	153, 352
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	38, 58
AspS9I	GGNCC	2 cut(s)	125, 171
AvaII	GGWCC	2 cut(s)	125, 171
BanI	GGYRCC	1 cut(s)	55
BbrPI	CACGTG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	2 cut(s)	301, 307
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	80, 143
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	4 cut(s)	39, 42, 45, 336
BlsI	GCNGC	4 cut(s)	40, 43, 46, 337
Bme18I	GGWCC	2 cut(s)	125, 171
BmgT120I	GGNCC	2 cut(s)	125, 171
BmiI	GGNNCC	3 cut(s)	57, 126, 172
BpiI	GAAGAC	1 cut(s)	188
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu10I	CCTNAGC	2 cut(s)	301, 307
BsaAI	YACGTR	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	353
BseMII	CTCAG	4 cut(s)	266, 315, 321, 342
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	4 cut(s)	95, 98, 289, 316
BseXI	GCAGC	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	38, 91, 203
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	80, 143
BsmBI	CGTCTC	2 cut(s)	80, 143
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	108, 222, 265, 270
BspACI	CCGC	5 cut(s)	38, 41, 44, 91, 203
BspCNI	CTCAG	4 cut(s)	265, 314, 320, 341
BspFNI	CGCG	3 cut(s)	38, 91, 203
BspLI	GGNNCC	3 cut(s)	57, 126, 172
BspPI	GGATC	3 cut(s)	116, 230, 260
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	4 cut(s)	108, 222, 265, 270
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	252, 301, 307, 328
BstFNI	CGCG	3 cut(s)	38, 91, 203
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	38, 58
BstKTI	GATC	4 cut(s)	111, 225, 268, 273
BstMAI	GTCTC	2 cut(s)	80, 143
BstMBI	GATC	4 cut(s)	108, 222, 265, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 44, 53
BstUI	CGCG	3 cut(s)	38, 91, 203
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	38, 58
Cfr13I	GGNCC	2 cut(s)	125, 171
CseI	GACGC	1 cut(s)	97
CviJI	RGCY	4 cut(s)	5, 97, 305, 338
CviKI_1	RGCY	4 cut(s)	5, 97, 305, 338
DdeI	CTNAG	4 cut(s)	252, 301, 307, 328
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	4 cut(s)	110, 224, 267, 272
DpnII	GATC	4 cut(s)	108, 222, 265, 270
Eco32I	GATATC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	125, 171
Eco72I	CACGTG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
Esp3I	CGTCTC	2 cut(s)	80, 143
FaiI	YATR	2 cut(s)	17, 378
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	39, 42, 45, 336
Fsp4HI	GCNGC	4 cut(s)	39, 42, 45, 336
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	2 cut(s)	37, 57
GluI	GCNGC	4 cut(s)	39, 42, 45, 336
HaeII	RGCGCY	1 cut(s)	59
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	38, 58
Hin1I	GRCGYC	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	36, 56
HinP1I	GCGC	2 cut(s)	36, 56
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	73, 165, 317
HpaI	GTTAAC	1 cut(s)	27
Hpy166II	GTNNAC	4 cut(s)	27, 128, 174, 321
Hpy188I	TCNGA	7 cut(s)	12, 113, 164, 227, 255, 270, 287
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	4 cut(s)	27, 128, 174, 321
Hpy99I	CGWCG	3 cut(s)	138, 147, 371
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 44, 53
HpyF3I	CTNAG	4 cut(s)	252, 301, 307, 328
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	56
HspAI	GCGC	2 cut(s)	36, 56
KasI	GGCGCC	1 cut(s)	55
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	108, 222, 265, 270
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	3 cut(s)	91, 205, 334
Lsp1109I	GCAGC	1 cut(s)	347
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	176
MalI	GATC	4 cut(s)	110, 224, 267, 272
MboI	GATC	4 cut(s)	108, 222, 265, 270
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	5 cut(s)	66, 100, 153, 341, 352
Mly113I	GGCGCC	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	1 cut(s)	26
MvnI	CGCG	3 cut(s)	38, 91, 203
MwoI	GCNNNNNNNGC	3 cut(s)	38, 44, 53
NarI	GGCGCC	1 cut(s)	56
NdeII	GATC	4 cut(s)	108, 222, 265, 270
NlaIV	GGNNCC	3 cut(s)	57, 126, 172
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 142, 266
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	73, 165
PkrI	GCNGC	4 cut(s)	40, 43, 46, 337
PleI	GAGTC	1 cut(s)	325
PluTI	GGCGCC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	57, 126, 172
PspPI	GGNCC	2 cut(s)	125, 171
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	4 cut(s)	39, 42, 45, 336
Sau3AI	GATC	4 cut(s)	108, 222, 265, 270
Sau96I	GGNCC	2 cut(s)	125, 171
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	3 cut(s)	179, 233, 326
SfoI	GGCGCC	1 cut(s)	57
SinI	GGWCC	2 cut(s)	125, 171
Sse9I	AATT	5 cut(s)	66, 100, 153, 341, 352
SsiI	CCGC	5 cut(s)	38, 41, 44, 91, 203
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	76
TasI	AATT	5 cut(s)	66, 100, 153, 341, 352
TauI	GCSGC	3 cut(s)	41, 44, 47
TfiI	GAWTC	2 cut(s)	73, 165
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	125, 171
XapI	RAATTY	2 cut(s)	153, 352
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.