Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012693

Physical Location & Seq

Genomic Coordinates Reverse (-)

48157807 .. 48158256

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGTACTATTTTTTTTTTTGTTGTGTTAGTGGCAATATGACTGTGGCTGGGATTGACTATTACATAAGTGACACTTTTGGACAAGGACTACACAACTCCTGCAAGGATGTTAAATTCCGATCCGTAGACTTGGTAGGTGCCGGTGCTAAAAGTTTTGAAGAATGGTTTGATTTTCTTGGAAAGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

63

Amino Acids

7.11

Weight (kDa)

5.55

Isoelectric Point (pI)

23.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPC1_N	PF16414	11 - 62	5e-09	Niemann-Pick C1 N terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012693)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0443141 RchiOBHm_Chr6g0284841
rosa_laevigata	RLG00000008014 RLG00000012711 RLG00000034684
rosa_roxburghii	Rroxscaffold_1G00068590
rosa_rugosa	Rorug06G0167400
rosa_samantha	Rh2AG448000 Rh3BG307600 Rh4BG390400 Rh4CG426100 Rh5BG126000 Rh6AG280100 Rh6BG280200 Rh6BG370100 Rh6CG282400 Rh6DG259200 Rh6DG275300 Rh6DG275500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	158
AlwI	GGATC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	140
BseGI	GGATG	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	1 cut(s)	47
CviKI_1	RGCY	1 cut(s)	47
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
FaeI	CATG	1 cut(s)	192
FaiI	YATR	3 cut(s)	38, 65, 190
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FatI	CATG	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	1 cut(s)	119
GsaI	CCCAGC	1 cut(s)	51
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	192
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	119
LpnPI	CCDG	3 cut(s)	33, 112, 154
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	1 cut(s)	170
MluCI	AATT	1 cut(s)	113
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	192
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	119
SetI	ASST	1 cut(s)	139
SgeI	CNNG	7 cut(s)	60, 95, 111, 115, 142, 153, 188
Sse9I	AATT	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	1 cut(s)	113
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	112
XapI	RAATTY	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.