Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0012693

Physical Location & Seq

Genomic Coordinates Reverse (-)

66890771 .. 66891462

Gene Structure 692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG426100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTCAACCGTGGCTTCTCCGACTCTGCCTCCGTTAACTGTTTGCTCGGCTTAGACTACGGTGGCGGCGGTGGTGCCGCGAACAATTCAGATTCAAGAGGAGGAGACGCAGAGGCTTATGCGGCGGCGAATTGCAGGATCAGAAGTCGTTTGGGTGAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACGGCGGTGGGAATAGAGCACAGGATCAGGATCAGAAGGTTGGGATTGGAGCAGTTTGCTCAGATGACGAACGATCCGATCACGGTGGATATCGGAAACTGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCTCCTCAGTCGCAGCCCAAATCTACTGGAATTTTTGATTTGCCGTCGCCAGATTCAGTGTCAATTGATCATAGTTTATCAAATCCTGCCATATCTCGCCCAAAACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

9.87

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012693)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0443141 RchiOBHm_Chr6g0284841
rosa_laevigata	RLG00000008014 RLG00000012711 RLG00000034684
rosa_roxburghii	Rroxscaffold_1G00068590
rosa_rugosa	Rorug06G0167400
rosa_samantha	Rh2AG448000 Rh3BG307600 Rh4BG390400 Rh4CG426100 Rh5BG126000 Rh6AG280100 Rh6BG280200 Rh6BG370100 Rh6CG282400 Rh6DG259200 Rh6DG275300 Rh6DG275500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	80
AciI	CCGC	6 cut(s)	66, 69, 78, 122, 125, 218
AclWI	GGATC	4 cut(s)	146, 245, 251, 281
AcsI	RAATTY	2 cut(s)	183, 374
AcvI	CACGTG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	99, 173
AlwI	GGATC	4 cut(s)	146, 245, 251, 281
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	2 cut(s)	183, 374
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	2 cut(s)	323, 329
BbvI	GCAGC	1 cut(s)	369
BceAI	ACGGC	2 cut(s)	231, 372
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	99, 173
BisI	GCNGC	5 cut(s)	67, 78, 123, 126, 358
BlsI	GCNGC	5 cut(s)	68, 79, 124, 127, 359
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	76, 202
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
Bpu10I	CCTNAGC	2 cut(s)	323, 329
BsaAI	YACGTR	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	242
BseMII	CTCAG	4 cut(s)	287, 337, 343, 364
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	4 cut(s)	114, 117, 311, 338
BseXI	GCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	99, 173
BsmBI	CGTCTC	2 cut(s)	99, 173
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
BspACI	CCGC	6 cut(s)	66, 69, 78, 122, 125, 218
BspCNI	CTCAG	4 cut(s)	286, 336, 342, 363
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	76, 202
BspPI	GGATC	4 cut(s)	146, 245, 251, 281
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
Bst4CI	ACNGT	4 cut(s)	11, 41, 62, 298
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	5 cut(s)	52, 273, 323, 329, 350
BstDSI	CCRYGG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	6 cut(s)	141, 240, 246, 289, 294, 414
BstMAI	GTCTC	2 cut(s)	99, 173
BstMBI	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	1 cut(s)	116
CviJI	RGCY	5 cut(s)	15, 51, 116, 327, 360
CviKI_1	RGCY	5 cut(s)	15, 51, 116, 327, 360
DdeI	CTNAG	5 cut(s)	52, 273, 323, 329, 350
DpnI	GATC	6 cut(s)	140, 239, 245, 288, 293, 413
DpnII	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	304
Esp3I	CGTCTC	2 cut(s)	99, 173
FaiI	YATR	3 cut(s)	120, 416, 436
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	5 cut(s)	67, 78, 123, 126, 358
Fsp4HI	GCNGC	5 cut(s)	67, 78, 123, 126, 358
GluI	GCNGC	5 cut(s)	67, 78, 123, 126, 358
HgaI	GACGC	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	5 cut(s)	23, 92, 195, 339, 397
HpaI	GTTAAC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	4 cut(s)	37, 158, 204, 343
Hpy188I	TCNGA	8 cut(s)	22, 91, 143, 194, 248, 276, 291, 308
Hpy188III	TCNNGA	2 cut(s)	96, 241
Hpy8I	GTNNAC	4 cut(s)	37, 158, 204, 343
Hpy99I	CGWCG	3 cut(s)	168, 177, 393
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	4 cut(s)	11, 41, 62, 298
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	5 cut(s)	52, 273, 323, 329, 350
HpySE526I	ACGT	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	411
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	7 cut(s)	121, 163, 220, 226, 356, 407, 443
Lsp1109I	GCAGC	1 cut(s)	369
MaeII	ACGT	1 cut(s)	206
MalI	GATC	6 cut(s)	140, 239, 245, 288, 293, 413
MboI	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
MboII	GAAGA	1 cut(s)	223
MfeI	CAATTG	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	5 cut(s)	85, 130, 183, 374, 407
MlyI	GAGTC	2 cut(s)	17, 348
MmeI	TCCRAC	1 cut(s)	45
MseI	TTAA	1 cut(s)	36
MunI	CAATTG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
NlaIV	GGNNCC	2 cut(s)	76, 202
NmeAIII	GCCGAG	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	169, 287
PfeI	GAWTC	3 cut(s)	92, 195, 397
PkrI	GCNGC	5 cut(s)	68, 79, 124, 127, 359
PleI	GAGTC	2 cut(s)	17, 347
PmaCI	CACGTG	1 cut(s)	207
PmlI	CACGTG	1 cut(s)	207
PpsI	GAGTC	2 cut(s)	17, 347
Ppu21I	YACGTR	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	76, 202
PspPI	GGNCC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	5 cut(s)	67, 78, 123, 126, 358
Sau3AI	GATC	6 cut(s)	138, 237, 243, 286, 291, 411
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	17, 348
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	4 cut(s)	209, 254, 348, 453
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	5 cut(s)	85, 130, 183, 374, 407
SsiI	CCGC	6 cut(s)	66, 69, 78, 122, 125, 218
TaaI	ACNGT	4 cut(s)	11, 41, 62, 298
TaiI	ACGT	1 cut(s)	209
TasI	AATT	5 cut(s)	85, 130, 183, 374, 407
TauI	GCSGC	4 cut(s)	69, 80, 125, 128
TfiI	GAWTC	3 cut(s)	92, 195, 397
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	407
TseI	GCWGC	1 cut(s)	357
TspGWI	ACGGA	2 cut(s)	22, 161
TspRI	CASTG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	2 cut(s)	183, 374
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.