Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012693

Physical Location & Seq

Genomic Coordinates Reverse (-)

54338743 .. 54341478

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG390400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTCAACCGTGGCTTCTCCGACTCCGCCTCTGTTAATTGCTTGCTCGGCCTAGACTACGGCGGCGGCGGCGCCACGAACAATTCAGATTCGAGAGGAGGAGAAGCAGAGGCTTCTGCGGCGGCGAATTGCAGGATCAGAAGTCATTTGGGTCAATATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACGGTGGTGGGAGTAGTCGCGGTGGGAATAGAGCGCAGGATCAGAAGGTTGGGATTGGAGCAGTTTGCTCAGATGTCGAACGATCCGATCACAGTGGATATCGGAAACTGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCTCCTCAGTTGCAGCCCAAATCTACTGGAATTTTTGATTTTCCATCGCCAGATTCAGTGTCAATTTACTCAAAATCAGACACAATTTATAAAGATACAACAGAACAAAAGCACTGAGAAGTCAAGGAAACAACAAAACCAACATAGCCGAAAATCCCAACAAAGAACTTTGAGTCGTCTAAAATGTGTGATAACACTTCGTCTGTCCGAGCTGTCCAGCAGCGGCGAATCACGGCTTCAGAATCTGACGACGATGAGGCGCCGGCTAACGTTCCAGGGTATAAATTTAGGGACGTTAGCCGGCGCCTCATCGTCGTCAGATTCTGTGACGGTCGGAGCGCGTGAGGGGGAACCGACGGTCGGAGAGGGGGAACCGACGGTCGGAGCGCGTGAAGAGGAACCGACAGTCGGAGTGCGTCGGACCGTCGGTTCCTCCTCACGCGCTCGGACCGTCACAGAATCTGACGACGATGAGGCGCCGGCTAACGTCCCTAAATTTATACCCTGGAACGTGCCGGCGCCTCATCGTCGTCAGATTCTGAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

299

Amino Acids

33.15

Weight (kDa)

10.26

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012693)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0443141 RchiOBHm_Chr6g0284841
rosa_laevigata	RLG00000008014 RLG00000012711 RLG00000034684
rosa_roxburghii	Rroxscaffold_1G00068590
rosa_rugosa	Rorug06G0167400
rosa_samantha	Rh2AG448000 Rh3BG307600 Rh4BG390400 Rh4CG426100 Rh5BG126000 Rh6AG280100 Rh6BG280200 Rh6BG370100 Rh6CG282400 Rh6DG259200 Rh6DG275300 Rh6DG275500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AccB1I	GGYRCC	5 cut(s)	71, 609, 653, 826, 868
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	4 cut(s)	230, 691, 739, 792
AciI	CCGC	8 cut(s)	27, 63, 66, 69, 119, 122, 230, 573
AclI	AACGTT	1 cut(s)	620
AclWI	GGATC	3 cut(s)	143, 257, 287
AcsI	RAATTY	4 cut(s)	180, 380, 634, 845
AcuI	CTGAAG	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	204
AcyI	GRCGYC	5 cut(s)	72, 610, 654, 827, 869
AfiI	CCNNNNNNNGG	3 cut(s)	710, 731, 758
AjnI	CCWGG	2 cut(s)	624, 854
AloI	GAACNNNNNNTCC	2 cut(s)	763, 795
AluBI	AGCT	1 cut(s)	562
AluI	AGCT	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	143, 257, 287
AlwNI	CAGNNNCTG	4 cut(s)	595, 674, 812, 889
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	363, 570
ApoI	RAATTY	4 cut(s)	180, 380, 634, 845
AspLEI	GCGC	9 cut(s)	74, 246, 612, 656, 691, 739, 794, 829, 871
AspS9I	GGNCC	3 cut(s)	198, 771, 798
AvaII	GGWCC	3 cut(s)	198, 771, 798
BanI	GGYRCC	5 cut(s)	71, 609, 653, 826, 868
BbrPI	CACGTG	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	215
BbvCI	CCTCAGC	2 cut(s)	329, 335
BbvI	GCAGC	2 cut(s)	375, 582
BccI	CCATC	1 cut(s)	402
BceAI	ACGGC	3 cut(s)	76, 599, 880
BciT130I	CCWGG	2 cut(s)	626, 856
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	5 cut(s)	75, 613, 657, 830, 872
BisI	GCNGC	8 cut(s)	64, 67, 70, 120, 123, 364, 571, 574
BlsI	GCNGC	8 cut(s)	65, 68, 71, 121, 124, 365, 572, 575
Bme1390I	CCNGG	2 cut(s)	626, 856
Bme18I	GGWCC	3 cut(s)	198, 771, 798
BmgT120I	GGNCC	3 cut(s)	198, 771, 798
BmrFI	CCNGG	2 cut(s)	626, 856
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
Bpu10I	CCTNAGC	2 cut(s)	329, 335
BsaAI	YACGTR	1 cut(s)	204
BsaHI	GRCGYC	5 cut(s)	72, 610, 654, 827, 869
BsaJI	CCNNGG	3 cut(s)	10, 625, 854
Bsc4I	CCNNNNNNNGG	3 cut(s)	710, 731, 758
Bse118I	RCCGGY	4 cut(s)	612, 650, 829, 865
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	626, 856
BseDI	CCNNGG	3 cut(s)	10, 625, 854
BseLI	CCNNNNNNNGG	3 cut(s)	710, 731, 758
BseMII	CTCAG	5 cut(s)	293, 343, 349, 370, 456
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	5 cut(s)	111, 114, 317, 344, 775
BseXI	GCAGC	2 cut(s)	375, 582
Bsh1236I	CGCG	4 cut(s)	230, 691, 739, 792
Bsh1285I	CGRYCG	3 cut(s)	684, 711, 732
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	5 cut(s)	71, 609, 653, 826, 868
BsiEI	CGRYCG	3 cut(s)	684, 711, 732
BsiSI	CCGG	4 cut(s)	613, 651, 830, 866
BslFI	GGGAC	2 cut(s)	655, 824
BslI	CCNNNNNNNGG	3 cut(s)	710, 731, 758
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	655, 824
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	135, 249, 292, 297
BspACI	CCGC	8 cut(s)	27, 63, 66, 69, 119, 122, 230, 573
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	5 cut(s)	292, 342, 348, 369, 457
BspFNI	CGCG	4 cut(s)	230, 691, 739, 792
BspPI	GGATC	3 cut(s)	143, 257, 287
BspT107I	GGYRCC	5 cut(s)	71, 609, 653, 826, 868
BsrFI	RCCGGY	4 cut(s)	612, 650, 829, 865
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	4 cut(s)	612, 650, 829, 865
BssECI	CCNNGG	3 cut(s)	10, 625, 854
BssMI	GATC	4 cut(s)	135, 249, 292, 297
BssNI	GRCGYC	5 cut(s)	72, 610, 654, 827, 869
Bst2UI	CCWGG	2 cut(s)	626, 856
Bst4CI	ACNGT	9 cut(s)	11, 214, 304, 682, 709, 730, 757, 775, 802
Bst6I	CTCTTC	1 cut(s)	738
BstACI	GRCGYC	5 cut(s)	72, 610, 654, 827, 869
BstBAI	YACGTR	1 cut(s)	204
BstC8I	GCNNGC	6 cut(s)	44, 176, 614, 652, 831, 867
BstDEI	CTNAG	5 cut(s)	279, 329, 335, 356, 465
BstDSI	CCRYGG	1 cut(s)	10
BstFNI	CGCG	4 cut(s)	230, 691, 739, 792
BstH2I	RGCGCY	5 cut(s)	75, 613, 657, 830, 872
BstHHI	GCGC	9 cut(s)	74, 246, 612, 656, 691, 739, 794, 829, 871
BstKTI	GATC	4 cut(s)	138, 252, 295, 300
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	4 cut(s)	135, 249, 292, 297
BstMCI	CGRYCG	3 cut(s)	684, 711, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 69, 119
BstNI	CCWGG	2 cut(s)	626, 856
BstSCI	CCNGG	2 cut(s)	624, 854
BstUI	CGCG	4 cut(s)	230, 691, 739, 792
BstV1I	GCAGC	2 cut(s)	375, 582
BstV2I	GAAGAC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	309, 413, 462
Cac8I	GCNNGC	6 cut(s)	44, 176, 614, 652, 831, 867
CaiI	CAGNNNCTG	4 cut(s)	595, 674, 812, 889
CfoI	GCGC	9 cut(s)	74, 246, 612, 656, 691, 739, 794, 829, 871
Cfr10I	RCCGGY	4 cut(s)	612, 650, 829, 865
Cfr13I	GGNCC	3 cut(s)	198, 771, 798
CpoI	CGGWCCG	2 cut(s)	771, 798
CseI	GACGC	1 cut(s)	755
CspI	CGGWCCG	2 cut(s)	771, 798
DdeI	CTNAG	5 cut(s)	279, 329, 335, 356, 465
DinI	GGCGCC	5 cut(s)	73, 611, 655, 828, 870
DpnI	GATC	4 cut(s)	137, 251, 294, 299
DpnII	GATC	4 cut(s)	135, 249, 292, 297
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
EciI	GGCGGA	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	3 cut(s)	198, 771, 798
Eco57I	CTGAAG	1 cut(s)	572
Eco72I	CACGTG	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	624, 854
EcoRV	GATATC	1 cut(s)	310
EgeI	GGCGCC	5 cut(s)	73, 611, 655, 828, 870
EheI	GGCGCC	5 cut(s)	73, 611, 655, 828, 870
Esp3I	CGTCTC	1 cut(s)	170
FaiI	YATR	4 cut(s)	440, 495, 632, 851
FaqI	GGGAC	2 cut(s)	655, 824
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	8 cut(s)	64, 67, 70, 120, 123, 364, 571, 574
Fsp4HI	GCNGC	8 cut(s)	64, 67, 70, 120, 123, 364, 571, 574
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	9 cut(s)	73, 245, 611, 655, 690, 738, 793, 828, 870
GluI	GCNGC	8 cut(s)	64, 67, 70, 120, 123, 364, 571, 574
HaeII	RGCGCY	5 cut(s)	75, 613, 657, 830, 872
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	4 cut(s)	613, 651, 830, 866
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	9 cut(s)	74, 246, 612, 656, 691, 739, 794, 829, 871
Hin1I	GRCGYC	5 cut(s)	72, 610, 654, 827, 869
Hin6I	GCGC	9 cut(s)	72, 244, 610, 654, 689, 737, 792, 827, 869
HinP1I	GCGC	9 cut(s)	72, 244, 610, 654, 689, 737, 792, 827, 869
HpaII	CCGG	4 cut(s)	613, 651, 830, 866
Hpy166II	GTNNAC	2 cut(s)	201, 349
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	2 cut(s)	201, 349
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	9 cut(s)	11, 214, 304, 682, 709, 730, 757, 775, 802
HpyCH4IV	ACGT	5 cut(s)	203, 620, 644, 837, 861
HpyCH4V	TGCA	2 cut(s)	132, 363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 69, 119
HpyF3I	CTNAG	5 cut(s)	279, 329, 335, 356, 465
HpySE526I	ACGT	5 cut(s)	203, 620, 644, 837, 861
Hsp92I	GRCGYC	5 cut(s)	72, 610, 654, 827, 869
HspAI	GCGC	9 cut(s)	72, 244, 610, 654, 689, 737, 792, 827, 869
KasI	GGCGCC	5 cut(s)	71, 609, 653, 826, 868
KroI	GCCGGC	4 cut(s)	612, 650, 829, 865
KroNI	GCCGGC	4 cut(s)	614, 652, 831, 867
Kzo9I	GATC	4 cut(s)	135, 249, 292, 297
LmnI	GCTCC	3 cut(s)	268, 686, 734
Lsp1109I	GCAGC	2 cut(s)	375, 582
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	5 cut(s)	203, 620, 644, 837, 861
MaeIII	GTNAC	2 cut(s)	676, 802
MalI	GATC	4 cut(s)	137, 251, 294, 299
MboI	GATC	4 cut(s)	135, 249, 292, 297
MboII	GAAGA	2 cut(s)	220, 755
MluCI	AATT	9 cut(s)	37, 82, 127, 180, 380, 413, 434, 634, 845
Mly113I	GGCGCC	5 cut(s)	72, 610, 654, 827, 869
MlyI	GAGTC	3 cut(s)	17, 354, 532
MmeI	TCCRAC	6 cut(s)	45, 664, 691, 712, 739, 749
MroNI	GCCGGC	4 cut(s)	612, 650, 829, 865
MseI	TTAA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	4 cut(s)	613, 651, 830, 866
MspR9I	CCNGG	2 cut(s)	626, 856
MvaI	CCWGG	2 cut(s)	626, 856
MvnI	CGCG	4 cut(s)	230, 691, 739, 792
MwoI	GCNNNNNNNGC	3 cut(s)	48, 69, 119
NaeI	GCCGGC	4 cut(s)	614, 652, 831, 867
NarI	GGCGCC	5 cut(s)	72, 610, 654, 827, 869
NdeII	GATC	4 cut(s)	135, 249, 292, 297
NgoMIV	GCCGGC	4 cut(s)	612, 650, 829, 865
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	676, 802
PcsI	WCGNNNNNNNCGW	2 cut(s)	166, 293
PdiI	GCCGGC	4 cut(s)	614, 652, 831, 867
PfeI	GAWTC	8 cut(s)	89, 192, 403, 578, 592, 671, 809, 886
PkrI	GCNGC	8 cut(s)	65, 68, 71, 121, 124, 365, 572, 575
PleI	GAGTC	3 cut(s)	17, 353, 531
PluTI	GGCGCC	5 cut(s)	75, 613, 657, 830, 872
PmaCI	CACGTG	1 cut(s)	204
PmlI	CACGTG	1 cut(s)	204
PpsI	GAGTC	3 cut(s)	17, 353, 531
Ppu21I	YACGTR	1 cut(s)	204
PsiI	TTATAA	1 cut(s)	440
Psp1406I	AACGTT	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	624, 854
PspCI	CACGTG	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	624, 854
PspPI	GGNCC	3 cut(s)	198, 771, 798
PstNI	CAGNNNCTG	4 cut(s)	595, 674, 812, 889
Rsr2I	CGGWCCG	2 cut(s)	771, 798
RsrII	CGGWCCG	2 cut(s)	771, 798
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	8 cut(s)	64, 67, 70, 120, 123, 364, 571, 574
Sau3AI	GATC	4 cut(s)	135, 249, 292, 297
Sau96I	GGNCC	3 cut(s)	198, 771, 798
SchI	GAGTC	3 cut(s)	17, 354, 532
ScrFI	CCNGG	2 cut(s)	626, 856
SetI	ASST	8 cut(s)	206, 260, 354, 564, 623, 647, 840, 864
SfoI	GGCGCC	5 cut(s)	73, 611, 655, 828, 870
SinI	GGWCC	3 cut(s)	198, 771, 798
Sse9I	AATT	9 cut(s)	37, 82, 127, 180, 380, 413, 434, 634, 845
SsiI	CCGC	8 cut(s)	27, 63, 66, 69, 119, 122, 230, 573
SspDI	GGCGCC	5 cut(s)	71, 609, 653, 826, 868
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	624, 854
TaaI	ACNGT	9 cut(s)	11, 214, 304, 682, 709, 730, 757, 775, 802
TaiI	ACGT	5 cut(s)	206, 623, 647, 840, 864
TaqI	TCGA	2 cut(s)	92, 287
TasI	AATT	9 cut(s)	37, 82, 127, 180, 380, 413, 434, 634, 845
TauI	GCSGC	6 cut(s)	66, 69, 72, 122, 125, 576
TfiI	GAWTC	8 cut(s)	89, 192, 403, 578, 592, 671, 809, 886
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	3 cut(s)	309, 413, 469
TseFI	GTSAC	2 cut(s)	676, 802
TseI	GCWGC	2 cut(s)	363, 570
Tsp45I	GTSAC	2 cut(s)	676, 802
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	3 cut(s)	309, 413, 469
VpaK11BI	GGWCC	3 cut(s)	198, 771, 798
XapI	RAATTY	4 cut(s)	180, 380, 634, 845
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.