RLG00000034684

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012693
Physical Location & Seq
Forward (+)
48412034 .. 48412749
716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034684

Sequence Viewer

Length: 324 bp
ATGCTCAACCACGACATTTCAAACTCTGCCTCTGTTAACTGCTTGCTCAGCCTAGATAACCTAGGCGGCGGCGCCGCCTCAAACAATTCGAATTGCTGGATCAGAAGTTGTTTGGGTCAACATTGTCGTCTCCGTCGCTGTCGAATTTGCCTCCTATTTGGGTCCACGTGGAAGACGGCGGTGGGAGTAGTCGCGATGGGAATAGAGCGCAGGATCAGAAGTGATCATAGTTTATCAAATGCTGTGCCATATCTCGCCAAAACCTATAATTTATCAAGAACCAGTAGCTCAAATGCCCGCTGTAACCCCCACAAGATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

9.79

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 194
AciI CCGC 5 cut(s) 66, 69, 75, 179, 298
AclWI GGATC 2 cut(s) 107, 221
AcsI RAATTY 1 cut(s) 144
AcvI CACGTG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 107, 221
ApoI RAATTY 1 cut(s) 144
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 2 cut(s) 74, 210
AspS9I GGNCC 1 cut(s) 162
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 162
AvrII CCTAGG 1 cut(s) 61
BanI GGYRCC 1 cut(s) 71
BbrPI CACGTG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 179
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 192
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 53, 62
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 3 cut(s) 67, 70, 75
BlnI CCTAGG 1 cut(s) 61
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 3 cut(s) 68, 71, 76
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 73, 163
BpiI GAAGAC 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 3 cut(s) 99, 213, 223
Bsp1720I GCTNAGC 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 194
BspACI CCGC 5 cut(s) 66, 69, 75, 179, 298
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 73, 163
BspPI GGATC 2 cut(s) 107, 221
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 3 cut(s) 99, 213, 223
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 44, 298
BstDEI CTNAG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 210
BstKTI GATC 3 cut(s) 102, 216, 226
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 99, 213, 223
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 209
BtuMI TCGCGA 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 44, 298
CfoI GCGC 2 cut(s) 74, 210
Cfr13I GGNCC 1 cut(s) 162
CviJI RGCY 2 cut(s) 51, 288
CviKI_1 RGCY 2 cut(s) 51, 288
DdeI CTNAG 1 cut(s) 47
DinI GGCGCC 1 cut(s) 73
DpnI GATC 3 cut(s) 101, 215, 225
DpnII GATC 3 cut(s) 99, 213, 223
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 134
FaiI YATR 3 cut(s) 228, 250, 267
FauI CCCGC 1 cut(s) 305
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 67, 70, 75
Fsp4HI GCNGC 3 cut(s) 67, 70, 75
FspBI CTAG 2 cut(s) 53, 62
GlaI GCGC 2 cut(s) 73, 209
GluI GCNGC 3 cut(s) 67, 70, 75
HaeII RGCGCY 1 cut(s) 75
HhaI GCGC 2 cut(s) 74, 210
Hin1I GRCGYC 1 cut(s) 72
Hin6I GCGC 2 cut(s) 72, 208
HinP1I GCGC 2 cut(s) 72, 208
HincII GTYRAC 2 cut(s) 37, 119
HindII GTYRAC 2 cut(s) 37, 119
HpaI GTTAAC 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 37, 119, 165
Hpy188I TCNGA 2 cut(s) 104, 218
Hpy188III TCNNGA 3 cut(s) 193, 276, 321
Hpy8I GTNNAC 3 cut(s) 37, 119, 165
Hpy99I CGWCG 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 72
HspAI GCGC 2 cut(s) 72, 208
KasI GGCGCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 3 cut(s) 99, 213, 223
LpnPI CCDG 3 cut(s) 82, 196, 295
MaeI CTAG 2 cut(s) 53, 62
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 302
MalI GATC 3 cut(s) 101, 215, 225
MboI GATC 3 cut(s) 99, 213, 223
MboII GAAGA 1 cut(s) 184
MluCI AATT 4 cut(s) 85, 91, 144, 268
Mly113I GGCGCC 1 cut(s) 72
MnlI CCTC 3 cut(s) 40, 88, 161
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 300
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 48
NarI GGCGCC 1 cut(s) 72
NdeII GATC 3 cut(s) 99, 213, 223
NlaIV GGNNCC 2 cut(s) 73, 163
NruI TCGCGA 1 cut(s) 194
NspV TTCGAA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 68, 71, 76
PluTI GGCGCC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 168
PmlI CACGTG 1 cut(s) 168
Ppu21I YACGTR 1 cut(s) 168
PspCI CACGTG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 73, 163
PspPI GGNCC 1 cut(s) 162
RruI TCGCGA 1 cut(s) 194
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 3 cut(s) 67, 70, 75
Sau3AI GATC 3 cut(s) 99, 213, 223
Sau96I GGNCC 1 cut(s) 162
SetI ASST 4 cut(s) 63, 170, 266, 290
SfoI GGCGCC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 162
Sse9I AATT 4 cut(s) 85, 91, 144, 268
SsiI CCGC 5 cut(s) 66, 69, 75, 179, 298
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 2 cut(s) 53, 62
StyI CCWWGG 1 cut(s) 61
TaiI ACGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 89, 142
TasI AATT 4 cut(s) 85, 91, 144, 268
TauI GCSGC 3 cut(s) 69, 72, 77
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 144
XmaJI CCTAGG 1 cut(s) 61
XspI CTAG 2 cut(s) 53, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.