Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012693

Physical Location & Seq

Genomic Coordinates Reverse (-)

24491567 .. 24493919

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCAGCTGGGCATATGGGTCTTTTGCCATTGGAAGGGACTGATGGCAGAAACAACCTGCAAGCTCGAACAAAATTGATATTATCAAATCCAAACAAAACGAAGAATACCGATTCTTCCAGATTTCACAATCGGACAAACAGTGTTCGAAATGGATTCCATTTTGGGATTACAAGGGATCTCTGGTACTATCCTAATTCGAGAAGCCTCCATTGTCGTCAGCATCTGCTTTTAGCCGACATCAAACTTCTCCATCAAGATCAACATCAGCACAGACTTGGGATCCATTCACGTGCTATTGTCATGATTGAAACAGAAAGAAGAAGACCTTTGAGCAATTCAAAGGAATTCAAGATGTGTAATTTATATAAGGGGTTCAAACCAGATAACTTGCCGGAATTGATCAGAAAAAATGCGTTTGGGCACCAGTACAATGGCCAGCAGTGTTTAACACCGATGTACCTAATTGGATCAAAATCGCTCATAAGCATGGCATGTGCAGCATGTACTTGTAGTGTGGATGCTAATAACATTTTTGTAGGCATGCTTAAGGATCATGGAGACATGTATAGACATGGCGATAGCTCTAATCGCAAGAGCGGAAAAGATAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

205

Amino Acids

23.39

Weight (kDa)

9.8

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012693)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0443141 RchiOBHm_Chr6g0284841
rosa_laevigata	RLG00000008014 RLG00000012711 RLG00000034684
rosa_roxburghii	Rroxscaffold_1G00068590
rosa_rugosa	Rorug06G0167400
rosa_samantha	Rh2AG448000 Rh3BG307600 Rh4BG390400 Rh4CG426100 Rh5BG126000 Rh6AG280100 Rh6BG280200 Rh6BG370100 Rh6CG282400 Rh6DG259200 Rh6DG275300 Rh6DG275500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	600
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	5 cut(s)	186, 277, 290, 478, 561
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	347
AcvI	CACGTG	1 cut(s)	293
AfaI	GTAC	4 cut(s)	188, 431, 461, 508
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	4 cut(s)	311, 342, 352, 379
AluBI	AGCT	3 cut(s)	8, 65, 585
AluI	AGCT	3 cut(s)	8, 65, 585
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	5 cut(s)	186, 277, 290, 478, 561
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	426
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BalI	TGGCCA	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	423
BbrPI	CACGTG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	2 cut(s)	38, 261
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	555
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	284, 425
BmsI	GCATC	2 cut(s)	232, 511
BpiI	GAAGAC	1 cut(s)	331
Bpu14I	TTCGAA	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	293
BsaBI	GATNNNNATC	2 cut(s)	264, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	427
Bse8I	GATNNNNATC	2 cut(s)	264, 475
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	2 cut(s)	264, 475
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	512
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	284, 425
BspMI	ACCTGC	1 cut(s)	66
BspPI	GGATC	5 cut(s)	186, 277, 290, 478, 561
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	427
BssMI	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
Bst4CI	ACNGT	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	548
BstBAI	YACGTR	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	63, 440, 545
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	6 cut(s)	181, 262, 285, 405, 473, 556
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 591
BstNSI	RCATGY	4 cut(s)	498, 507, 547, 568
BstSLI	GKGCMC	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	178, 282
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	2 cut(s)	178, 282
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	148, 449
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	63, 440, 545
CaiI	CAGNNNCTG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	303
Csp6I	GTAC	4 cut(s)	187, 430, 460, 507
CviAII	CATG	8 cut(s)	304, 490, 495, 504, 544, 557, 565, 575
CviJI	RGCY	6 cut(s)	8, 65, 207, 236, 438, 585
CviKI_1	RGCY	6 cut(s)	8, 65, 207, 236, 438, 585
CviQI	GTAC	4 cut(s)	187, 430, 460, 507
DpnI	GATC	6 cut(s)	180, 261, 284, 404, 472, 555
DpnII	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
EaeI	YGGCCR	1 cut(s)	436
Eco72I	CACGTG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	347
FaeI	CATG	8 cut(s)	307, 493, 498, 507, 547, 560, 568, 578
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	8 cut(s)	303, 489, 494, 503, 543, 556, 564, 574
FauNDI	CATATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	8 cut(s)	307, 493, 498, 507, 547, 560, 568, 578
HinfI	GANTC	2 cut(s)	113, 156
HpaII	CCGG	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	135, 407
Hpy188III	TCNNGA	5 cut(s)	120, 201, 257, 304, 352
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	61, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 591
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	8 cut(s)	307, 493, 498, 507, 547, 560, 568, 578
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
LpnPI	CCDG	7 cut(s)	71, 133, 169, 396, 408, 440, 452
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	2 cut(s)	232, 511
MaeII	ACGT	1 cut(s)	292
MalI	GATC	6 cut(s)	180, 261, 284, 404, 472, 555
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
MboII	GAAGA	4 cut(s)	108, 115, 333, 336
MflI	RGATCY	2 cut(s)	178, 282
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	7 cut(s)	74, 196, 337, 347, 361, 398, 465
MluNI	TGGCCA	1 cut(s)	438
MnlI	CCTC	1 cut(s)	218
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	2 cut(s)	449, 549
MslI	CAYNNNNRTG	2 cut(s)	291, 488
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	500, 591
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
NlaIII	CATG	8 cut(s)	307, 493, 498, 507, 547, 560, 568, 578
NlaIV	GGNNCC	2 cut(s)	284, 425
NspI	RCATGY	4 cut(s)	498, 507, 547, 568
NspV	TTCGAA	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	547
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	113, 156
PkrI	GCNGC	1 cut(s)	502
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
Ppu21I	YACGTR	1 cut(s)	293
PscI	ACATGT	1 cut(s)	564
PspCI	CACGTG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	284, 425
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	178, 282
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	4 cut(s)	188, 431, 461, 508
RsaNI	GTAC	4 cut(s)	187, 430, 460, 507
RseI	CAYNNNNRTG	2 cut(s)	291, 488
SaqAI	TTAA	2 cut(s)	449, 549
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	6 cut(s)	178, 259, 282, 402, 470, 553
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	7 cut(s)	10, 60, 67, 295, 331, 465, 587
SfaNI	GCATC	2 cut(s)	232, 511
SfuI	TTCGAA	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	291, 488
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	7 cut(s)	74, 196, 337, 347, 361, 398, 465
SsiI	CCGC	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	67, 148, 200
TasI	AATT	7 cut(s)	74, 196, 337, 347, 361, 398, 465
TatI	WGTACW	2 cut(s)	429, 506
TfiI	GAWTC	2 cut(s)	113, 156
Tru1I	TTAA	2 cut(s)	449, 549
Tru9I	TTAA	2 cut(s)	449, 549
TscAI	CASTG	2 cut(s)	148, 449
TseI	GCWGC	1 cut(s)	500
TspRI	CASTG	2 cut(s)	148, 449
Vha464I	CTTAAG	1 cut(s)	548
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	4 cut(s)	498, 507, 547, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.