Rh5BG126000

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012693
Physical Location & Seq
Reverse (-)
11894774 .. 11895049
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG126000.1

Sequence Viewer

Length: 276 bp
ATGCTCAACCGCGGCTTCTCGGACTCCGCCTCAGTTAACTACTTGCTCGGCCTAGACGATGACGGCGGCGGCGGCGCCGCAAACAATTCGGATTCGAGAGGAGGAGATGCGGAGGCTTCTGCGGCACCGAATTGCAGGATCAGAAGTCGTTTGGGTCAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCACCGATTCGGGTCCACGTGGAAGACGGCGGTGGGAGTAGTCGCAGTGGGAATAGAGCGCAGGATCAGAAGGTGGGGATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

91

Amino Acids

10.01

Weight (kDa)

11.22

Isoelectric Point (pI)

70.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 74, 124
AccII CGCG 1 cut(s) 12
AclWI GGATC 2 cut(s) 146, 260
AcsI RAATTY 1 cut(s) 183
AcvI CACGTG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 146, 260
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 183
AspLEI GCGC 2 cut(s) 77, 249
AspS9I GGNCC 1 cut(s) 201
AvaII GGWCC 1 cut(s) 201
BanI GGYRCC 2 cut(s) 74, 124
BbrPI CACGTG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 218
BceAI ACGGC 2 cut(s) 79, 231
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 6 cut(s) 13, 67, 70, 73, 78, 123
BlsI GCNGC 6 cut(s) 14, 68, 71, 74, 79, 124
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 3 cut(s) 76, 126, 202
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 114, 117
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 2 cut(s) 74, 124
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 138, 252
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 44
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 76, 126, 202
BspPI GGATC 2 cut(s) 146, 260
BspT107I GGYRCC 2 cut(s) 74, 124
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 138, 252
BssNI GRCGYC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 249
BstKTI GATC 2 cut(s) 141, 255
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 138, 252
BstMWI GCNNNNNNNGC 2 cut(s) 72, 122
BstUI CGCG 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 2 cut(s) 77, 249
Cfr13I GGNCC 1 cut(s) 201
Cfr42I CCGCGG 1 cut(s) 13
CviJI RGCY 3 cut(s) 15, 51, 116
CviKI_1 RGCY 3 cut(s) 15, 51, 116
DdeI CTNAG 1 cut(s) 31
DinI GGCGCC 1 cut(s) 76
DpnI GATC 2 cut(s) 140, 254
DpnII GATC 2 cut(s) 138, 252
EciI GGCGGA 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 173
Fnu4HI GCNGC 6 cut(s) 13, 67, 70, 73, 78, 123
Fsp4HI GCNGC 6 cut(s) 13, 67, 70, 73, 78, 123
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 76, 248
GluI GCNGC 6 cut(s) 13, 67, 70, 73, 78, 123
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 51
HhaI GCGC 2 cut(s) 77, 249
Hin1I GRCGYC 1 cut(s) 75
Hin6I GCGC 2 cut(s) 75, 247
HinP1I GCGC 2 cut(s) 75, 247
HincII GTYRAC 2 cut(s) 37, 158
HindII GTYRAC 2 cut(s) 37, 158
HinfI GANTC 3 cut(s) 23, 92, 195
HpaI GTTAAC 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 37, 158, 204
Hpy188I TCNGA 4 cut(s) 22, 91, 143, 257
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 3 cut(s) 37, 158, 204
Hpy99I CGWCG 2 cut(s) 168, 177
HpyAV CCTTC 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 122
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 75
HspAI GCGC 2 cut(s) 75, 247
KasI GGCGCC 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 37
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 2 cut(s) 138, 252
LpnPI CCDG 3 cut(s) 121, 163, 235
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 140, 254
MboI GATC 2 cut(s) 138, 252
MboII GAAGA 1 cut(s) 223
MluCI AATT 3 cut(s) 85, 130, 183
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 4 cut(s) 40, 92, 95, 106
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 12
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 72, 122
NarI GGCGCC 1 cut(s) 75
NdeII GATC 2 cut(s) 138, 252
NlaIV GGNNCC 3 cut(s) 76, 126, 202
NmeAIII GCCGAG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 169
PfeI GAWTC 2 cut(s) 92, 195
PkrI GCNGC 6 cut(s) 14, 68, 71, 74, 79, 124
PleI GAGTC 1 cut(s) 17
PluTI GGCGCC 1 cut(s) 78
PmaCI CACGTG 1 cut(s) 207
PmlI CACGTG 1 cut(s) 207
PpsI GAGTC 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 207
PspCI CACGTG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 76, 126, 202
PspPI GGNCC 1 cut(s) 201
SacII CCGCGG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 6 cut(s) 13, 67, 70, 73, 78, 123
Sau3AI GATC 2 cut(s) 138, 252
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 17
SetI ASST 2 cut(s) 209, 263
SfaNI GCATC 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 76
Sfr303I CCGCGG 1 cut(s) 13
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 1 cut(s) 201
Sse9I AATT 3 cut(s) 85, 130, 183
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 1 cut(s) 53
TaiI ACGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 85, 130, 183
TauI GCSGC 6 cut(s) 15, 69, 72, 75, 80, 125
TfiI GAWTC 2 cut(s) 92, 195
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 1 cut(s) 183
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.