Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Forward (+)

1782496 .. 1782804

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAACACAGATGCTAGAAAGGCAATGTTTTGTATAATTATGAGCGGGGAGGATTACATTGATGCATTTGAGAAGCTTTTGGGATTGGATTTACATGGAAAGCAGGACAGAGAAACAATGCAAGTTCTTGTGGAGTGCTGTTTGGAGGAGAAACTGTTTAACAAGTATTACACGATTCTGGCTTCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

63

Amino Acids

7.33

Weight (kDa)

4.94

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	6 - 63	2.9e-11	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	1 cut(s)	45
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
BfaI	CTAG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse3DI	GCAATG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	161
BspACI	CCGC	1 cut(s)	45
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	2 cut(s)	76, 182
CviKI_1	RGCY	2 cut(s)	76, 182
EcoT22I	ATGCAT	1 cut(s)	67
FaeI	CATG	1 cut(s)	98
FaiI	YATR	3 cut(s)	35, 41, 96
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	65, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	98
LpnPI	CCDG	2 cut(s)	89, 164
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	45
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	2 cut(s)	43, 139
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	159
SetI	ASST	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	52
SgeI	CNNG	8 cut(s)	27, 58, 107, 116, 134, 140, 175, 184
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	156
TasI	AATT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.