Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Reverse (-)

67120909 .. 67122795

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGTTCATGCTTGAAACCATATCTGACATCAAGAACAAGAAAAGGTCTAAAGAAGATACTACACCTCATACAAGGATAAAGAAATGGCTACAAAAGTTCTGTGGGACAATTTGGTTATCTGGGGATATTGCTTCAACAGTAGAGAATGTCGAAGAGGTTGCCAACACAATAGACAAAGAAGTTCTTGAAGCCCAGAAACTTTTGCAGCTCGCTGCTGCACAGCAAATGAACACAGATGCTAGAAAGGCAATGGTTTGTATAATTATGAGCGGGGAGGATTACATTGATGCATTTGAGAAGCTTTTGAGATTGGATTTACATGGAAAGCAGTTCATGTGGAGTGCTGTTTGCAGGAGAAAGTGTCTTAACAAGTATTACACAATTCTCGCTTCCAAATTTTGCGAGCATGACAAAAATCACAAGTTCACATTACATCTGGACTCAATGCAGCTTAGTAGGTCAATGCACCTAGCCAAATTTTTTGCAGAGATGGTAGCCTCTTTCGCCCTCTCCCTTGTTGTACTGAAGACGGTAGATCTAGCTGACATCAAGCAACCAACTGCAAAAAGGACAAGTACAAGATCCAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

199

Amino Acids

22.75

Weight (kDa)

9.15

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	398, 479
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	525, 580
AgsI	TTSAA	3 cut(s)	17, 138, 191
AluBI	AGCT	4 cut(s)	211, 304, 454, 545
AluI	AGCT	4 cut(s)	211, 304, 454, 545
AlwI	GGATC	1 cut(s)	579
ApeKI	GCWGC	4 cut(s)	208, 215, 218, 451
ApoI	RAATTY	2 cut(s)	398, 479
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	4 cut(s)	202, 205, 220, 463
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	577
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BfaI	CTAG	3 cut(s)	243, 473, 542
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	4 cut(s)	209, 216, 219, 452
BlsI	GCNGC	4 cut(s)	210, 217, 220, 453
BmsI	GCATC	2 cut(s)	229, 280
BpiI	GAAGAC	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bse3DI	GCAATG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	258
BseXI	GCAGC	4 cut(s)	202, 205, 220, 463
BsgI	GTGCAG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	538, 584
BspACI	CCGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	258
BssMI	GATC	2 cut(s)	538, 584
Bst4CI	ACNGT	2 cut(s)	142, 535
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	213, 407
BstDEI	CTNAG	1 cut(s)	455
BstKTI	GATC	2 cut(s)	541, 587
BstMBI	GATC	2 cut(s)	538, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 506
BstV1I	GCAGC	4 cut(s)	202, 205, 220, 463
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	538, 584
BstYI	RGATCY	2 cut(s)	538, 584
Cac8I	GCNNGC	2 cut(s)	213, 407
Csp6I	GTAC	2 cut(s)	524, 579
CviAII	CATG	4 cut(s)	10, 323, 337, 410
CviJI	RGCY	9 cut(s)	91, 194, 211, 304, 454, 476, 500, 545, 592
CviKI_1	RGCY	9 cut(s)	91, 194, 211, 304, 454, 476, 500, 545, 592
CviQI	GTAC	2 cut(s)	524, 579
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	2 cut(s)	540, 586
DpnII	GATC	2 cut(s)	538, 584
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	548
EcoT22I	ATGCAT	1 cut(s)	295
FaeI	CATG	4 cut(s)	13, 326, 340, 413
FaiI	YATR	8 cut(s)	11, 23, 72, 263, 269, 324, 338, 411
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	4 cut(s)	9, 322, 336, 409
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	209, 216, 219, 452
Fsp4HI	GCNGC	4 cut(s)	209, 216, 219, 452
FspBI	CTAG	3 cut(s)	243, 473, 542
GluI	GCNGC	4 cut(s)	209, 216, 219, 452
Hin1II	CATG	4 cut(s)	13, 326, 340, 413
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	3 cut(s)	34, 188, 440
Hpy8I	GTNNAC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	142, 535
HpyCH4V	TGCA	8 cut(s)	208, 221, 293, 354, 451, 469, 488, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 506
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	4 cut(s)	13, 326, 340, 413
Kzo9I	GATC	2 cut(s)	538, 584
LpnPI	CCDG	4 cut(s)	108, 209, 340, 425
Lsp1109I	GCAGC	4 cut(s)	202, 205, 220, 463
LweI	GCATC	2 cut(s)	229, 280
MaeI	CTAG	3 cut(s)	243, 473, 542
MalI	GATC	2 cut(s)	540, 586
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	538, 584
MboII	GAAGA	3 cut(s)	68, 167, 541
MflI	RGATCY	2 cut(s)	538, 584
MluCI	AATT	5 cut(s)	111, 264, 384, 398, 479
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	5 cut(s)	78, 151, 271, 511, 521
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	248, 506
NdeII	GATC	2 cut(s)	538, 584
NlaIII	CATG	4 cut(s)	13, 326, 340, 413
NsiI	ATGCAT	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	210, 217, 220, 453
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	538, 584
RsaI	GTAC	2 cut(s)	525, 580
RsaNI	GTAC	2 cut(s)	524, 579
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	4 cut(s)	209, 216, 219, 452
Sau3AI	GATC	2 cut(s)	538, 584
SchI	GAGTC	1 cut(s)	437
SetI	ASST	9 cut(s)	50, 70, 162, 213, 306, 456, 464, 474, 547
SfaNI	GCATC	2 cut(s)	229, 280
Sse9I	AATT	5 cut(s)	111, 264, 384, 398, 479
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	3 cut(s)	243, 473, 542
TaaI	ACNGT	2 cut(s)	142, 535
TaqI	TCGA	1 cut(s)	153
TasI	AATT	5 cut(s)	111, 264, 384, 398, 479
TatI	WGTACW	2 cut(s)	523, 578
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	4 cut(s)	208, 215, 218, 451
TspDTI	ATGAA	2 cut(s)	245, 325
XapI	RAATTY	2 cut(s)	398, 479
XspI	CTAG	3 cut(s)	243, 473, 542
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.