Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Reverse (-)

28891222 .. 28897522

Gene Structure 6301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGGAGAAATCAAGACAAGAAAAGCGAAAAGAAGCTCGGTCGGTCAAAAATGCCAGAAAAAACGAGTCTTGGCTCCAAAGACAGAAATCTCAAAAGCTCAAAAGCTCAAAATCTACAGAGAAACGACAAAATTCTTCTGTTCAGAATGTGAAAGACGAAACAGTTACCCAATTGGATGCTACTTCTGGGAGAAGTAGGAATATGAAAAATACTAGTATGGGAGTGGAAAAAGAAGTTGAAAAGACTAAATCAAAGGCGATGCAAGGAGACAAGGTATCAAAGAGAACCCCAAAAACAAAGTTTGAGAAGTTTCTTGAACTGGATAATACTAGGGCTGAGGAGGATTTGGAACTAGAAAGGAAACTTGCAAAGAAACTCAAAGTGAAGGGTGGAAAATTGAAGGGTGAGGATCTTGGTCTTAACATGTTGTTTGAAGGAATTTCATCTTTTGCTGATTCATTGGGAAACAAAGAAGTGGTGTATCCTGAGGCATTGCCTTCTAAAAAATCTGAAAAAAGCTCTCCAAGAAAGAAACGGAAGAAGGAAAAGTTATTACCTGATGACTTGAAGGGTGAAGATCCAAAGGTTGTCGTCATTGATGGTGCTGAGGTGGAATCTGAAGATTTTCCTTCCAAGTCATCTACAAGGAAGAGACAGAAGAAGAGAAAGTCCTTGGAGGAGACAAAAGAGGTCAACAAGGAAGGTGATATGAACATTGAGGTATCTAAGCCAATACAGTCATGTGGGACGGATATTGTGTTGGAAAAAGTTCCTGCCAAGACACCCAAAAAATATGTAGCTCCTCACTTAAGATCACGTGCAGGGAATGAGCTTGAAGAGCATAGTCAGATCCGTCGACAATTACGTGGTCTTCTAAATAGACTCTCGGAATCTAATGTGGAATCTATTACAGGGGACGTGTCAGTCCTCATGCGTTCCATTCCTCGTGGTATTGCCTCTCAGATATTTGGTGAGGAGGTGTTAGCCTCATGTGTTCATGGTCCTCGTGGAAATGAACAGCATGCTGCTGTTTTTGCTGCTTTTGTGGCTGGCATGGCCAGTTCAGTGGGAATCGACTTTGGTGCGAAGCTTCTGGCTTTACTTGCTAAAACTTTTGAGGATGAATACCACAAAGAGGACAATATTTCCTTGAGAAATCTTACTCTTTTTCTCTCTCAATTATGCATATTTGGAGTTTGTTCAAGTGATTTGATATACGACTTTCTGATTGTTTTGAGCAAGCGGTTAACAGAGATTGATGTCTCCACCATCTTGACAGTTTTGCAATGCTGTGGAATGAAAATAAGGGCTGATGATCCTCTTGTGATGAAAAATTTTATTGCCAGTGTTCAGAATAGAGTGAATGAGTTAAAAGTCTCATGTGGAGATGACCAGGAGAAGATCAATGGCAAAAGGATGGAGTTCATGCTTGAAACCATATGTGACATCAAGAACAACAAGAAAAGGCCTAAAGAAGATACCGCACCTCATACAAGGATAAAGAAATGGCTACAAAAGTTATGTGTAGAAGACATTTTAATAAGAGGACTCAATTGGAGCAAACTTCTTGATCCTAATAAGAAGGGCCAGTGGTGGTTATCTGGGGATATTGCTTCAACAGTAGACAATGTCGAAGAGGTAGCCAACACAATAGACAAAGAGGTTCTTGAAGCCCAGAAACTTTTGCAGCTCGCTGCTGCACAGAGAATGAACACAGATGCTAGAAAGGCAATTTTTTGTATAATTATGAGTGGGGAGGATTACATTGATGCATTTGAAAAGCTTTTGAGATTGGATTTACATGGAAAGCAGGACAGAGAGATAATGCGAGTTCTTGTGGAGTGCTGTTTGCAGGAGAAAGTGTTTAACAAGTATTACACAGTTCTGGCTTCCAAATTGTGTGAGCATGACAAAAATCACAAGTTCACATTACAGTTTTGCCTTTGGGACCACTTCAAACAGCTGGACTCAATGCAGCTTAGTAGGTCAATGCACCTAGCCAAATTTGTTGCAGAGATGATAGCCTCTTTCACCCTCTCCCTCGCCGTACTGAAGACAGTAGATCTAGCTGACATCAAGCAACTAACTGCAAAACGGACAATGCATTTCCGGATGTTATTTGAGGCCATCTTTGAGTATCCAGACAGCCTGATATGGAATATATTCACGCGTGTAGCCGTCACCCCGGAGCTTGAAAGTCTTCGACATGGGATTGAATTTTTTATCAAGTATATTGTGGAAACCAATAAATCCCTCGGTGAAAAGTTTAAGCTTGCAAGGAAAGCCCTGAATAATGCTGAAGGGGTTCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

771

Amino Acids

87.74

Weight (kDa)

9.19

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	286 - 487	5.3e-17	MIF4G domain
MA3	PF02847	575 - 676	7.8e-21	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	923
AccI	GTMKAC	2 cut(s)	856, 1623
AccII	CGCG	1 cut(s)	2170
AccIII	TCCGGA	1 cut(s)	2109
AciI	CCGC	2 cut(s)	1243, 1482
AclWI	GGATC	5 cut(s)	417, 572, 844, 1310, 1565
AcoI	YGGCCR	1 cut(s)	1056
AcsI	RAATTY	5 cut(s)	130, 438, 1333, 2003, 2216
AcuI	CTGAAG	2 cut(s)	639, 2072
AcvI	CACGTG	1 cut(s)	818
AfaI	GTAC	1 cut(s)	2049
AfiI	CCNNNNNNNGG	1 cut(s)	1135
AflII	CTTAAG	1 cut(s)	808
AflIII	ACRYGT	3 cut(s)	423, 918, 2168
AhlI	ACTAGT	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	1 cut(s)	1392
Alw26I	GTCTC	5 cut(s)	261, 646, 674, 1267, 1381
AlwI	GGATC	5 cut(s)	417, 572, 844, 1310, 1565
Aor13HI	TCCGGA	1 cut(s)	2109
AoxI	GGCC	4 cut(s)	1056, 1466, 1585, 2124
ApeKI	GCWGC	6 cut(s)	1025, 1037, 1687, 1694, 1697, 1975
ApoI	RAATTY	5 cut(s)	130, 438, 1333, 2003, 2216
Asp700I	GAANNNNTTC	5 cut(s)	624, 768, 2162, 2199, 2304
AspS9I	GGNCC	3 cut(s)	1001, 1585, 1948
AsuC2I	CCSGG	1 cut(s)	2186
AsuHPI	GGTGA	7 cut(s)	416, 584, 716, 983, 2023, 2173, 2270
AvaII	GGWCC	2 cut(s)	1001, 1948
AxyI	CCTNAGG	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	1058
BauI	CACGAG	2 cut(s)	945, 1005
BbrPI	CACGTG	1 cut(s)	818
BbsI	GAAGAC	4 cut(s)	863, 1536, 2060, 2192
BbvCI	CCTCAGC	2 cut(s)	336, 606
BbvI	GCAGC	6 cut(s)	1012, 1024, 1681, 1684, 1699, 1987
BccI	CCATC	4 cut(s)	593, 1277, 1411, 2135
BceAI	ACGGC	2 cut(s)	2030, 2162
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BciT130I	CCWGG	1 cut(s)	1394
BciVI	GTATCC	2 cut(s)	492, 2148
BcnI	CCSGG	1 cut(s)	2186
BcoDI	GTCTC	5 cut(s)	261, 646, 674, 1267, 1381
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	6 cut(s)	213, 330, 353, 1722, 1997, 2066
BfmI	CTRYAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	808
BfuI	GTATCC	2 cut(s)	492, 2148
BglII	AGATCT	1 cut(s)	2062
BisI	GCNGC	6 cut(s)	1026, 1038, 1688, 1695, 1698, 1976
BlsI	GCNGC	6 cut(s)	1027, 1039, 1689, 1696, 1699, 1977
Bme1390I	CCNGG	2 cut(s)	1394, 2186
Bme18I	GGWCC	2 cut(s)	1001, 1948
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	3 cut(s)	1001, 1585, 1948
BmiI	GGNNCC	2 cut(s)	74, 1949
BmrFI	CCNGG	2 cut(s)	1394, 2186
BmsI	GCATC	4 cut(s)	166, 249, 1708, 1759
BpiI	GAAGAC	4 cut(s)	863, 1536, 2060, 2192
Bpu10I	CCTNAGC	2 cut(s)	336, 606
BpuEI	CTTGAG	1 cut(s)	1171
BpuMI	CCSGG	1 cut(s)	2186
BsaAI	YACGTR	2 cut(s)	818, 866
BsaJI	CCNNGG	3 cut(s)	672, 2184, 2254
BsaWI	WCCGGW	1 cut(s)	2109
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 1847, 1877
Bsc4I	CCNNNNNNNGG	1 cut(s)	1135
Bse1I	ACTGG	4 cut(s)	324, 1059, 1344, 1588
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	2 cut(s)	491, 1292
BseAI	TCCGGA	1 cut(s)	2109
BseBI	CCWGG	1 cut(s)	1394
BseDI	CCNNGG	3 cut(s)	672, 2184, 2254
BseGI	GGATG	4 cut(s)	181, 1126, 1422, 2118
BseLI	CCNNNNNNNGG	1 cut(s)	1135
BseMI	GCAATG	2 cut(s)	491, 1292
BseMII	CTCAG	4 cut(s)	327, 477, 597, 974
BseNI	ACTGG	4 cut(s)	324, 1059, 1344, 1588
BseRI	GAGGAG	4 cut(s)	353, 692, 792, 989
BseXI	GCAGC	6 cut(s)	1012, 1024, 1681, 1684, 1699, 1987
BsgI	GTGCAG	2 cut(s)	840, 1683
Bsh1236I	CGCG	1 cut(s)	2170
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	1058, 1468, 1587, 2126
BsiEI	CGRYCG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	2110, 2186
BslFI	GGGAC	3 cut(s)	760, 929, 1961
BslI	CCNNNNNNNGG	1 cut(s)	1135
BsmAI	GTCTC	5 cut(s)	261, 646, 674, 1267, 1381
BsmFI	GGGAC	3 cut(s)	760, 929, 1961
BsnI	GGCC	4 cut(s)	1058, 1468, 1587, 2126
Bsp13I	TCCGGA	1 cut(s)	2109
Bsp143I	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
BspACI	CCGC	2 cut(s)	1243, 1482
BspANI	GGCC	4 cut(s)	1058, 1468, 1587, 2126
BspCNI	CTCAG	4 cut(s)	328, 478, 598, 973
BspEI	TCCGGA	1 cut(s)	2109
BspFNI	CGCG	1 cut(s)	2170
BspLI	GGNNCC	2 cut(s)	74, 1949
BspPI	GGATC	5 cut(s)	417, 572, 844, 1310, 1565
BspQI	GCTCTTC	1 cut(s)	831
BspTI	CTTAAG	1 cut(s)	808
BsrDI	GCAATG	2 cut(s)	491, 1292
BsrI	ACTGG	4 cut(s)	324, 1059, 1344, 1588
BssECI	CCNNGG	3 cut(s)	672, 2184, 2254
BssMI	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
BssSI	CACGAG	2 cut(s)	945, 1005
BssT1I	CCWWGG	1 cut(s)	672
Bst2BI	CACGAG	2 cut(s)	945, 1005
Bst2UI	CCWGG	1 cut(s)	1394
Bst4CI	ACNGT	7 cut(s)	163, 738, 1279, 1621, 1882, 1935, 2059
Bst6I	CTCTTC	4 cut(s)	644, 656, 831, 1629
BstAFI	CTTAAG	1 cut(s)	808
BstBAI	YACGTR	2 cut(s)	818, 866
BstC8I	GCNNGC	5 cut(s)	1023, 1051, 1241, 1692, 2274
BstDEI	CTNAG	6 cut(s)	336, 486, 606, 726, 960, 1979
BstF5I	GGATG	4 cut(s)	181, 1126, 1422, 2118
BstFNI	CGCG	1 cut(s)	2170
BstKTI	GATC	8 cut(s)	412, 580, 815, 852, 1318, 1404, 1573, 2065
BstMAI	GTCTC	5 cut(s)	261, 646, 674, 1267, 1381
BstMBI	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	7 cut(s)	838, 1034, 1046, 1055, 1103, 1727, 2282
BstNI	CCWGG	1 cut(s)	1394
BstNSI	RCATGY	2 cut(s)	427, 1025
BstSCI	CCNGG	2 cut(s)	1392, 2184
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	2170
BstV1I	GCAGC	6 cut(s)	1012, 1024, 1681, 1684, 1699, 1987
BstV2I	GAAGAC	4 cut(s)	863, 1536, 2060, 2192
BstX2I	RGATCY	4 cut(s)	409, 577, 849, 2062
BstXI	CCANNNNNNTGG	1 cut(s)	1066
BstYI	RGATCY	4 cut(s)	409, 577, 849, 2062
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	2 cut(s)	492, 2148
BsuRI	GGCC	4 cut(s)	1058, 1468, 1587, 2126
BtgZI	GCGATG	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	4 cut(s)	181, 1126, 1422, 2118
BtsIMutI	CAGTG	3 cut(s)	1071, 1351, 1595
Cac8I	GCNNGC	5 cut(s)	1023, 1051, 1241, 1692, 2274
Cfr13I	GGNCC	3 cut(s)	1001, 1585, 1948
Csp6I	GTAC	1 cut(s)	2048
CviQI	GTAC	1 cut(s)	2048
DdeI	CTNAG	6 cut(s)	336, 486, 606, 726, 960, 1979
DpnI	GATC	8 cut(s)	411, 579, 814, 851, 1317, 1403, 1572, 2064
DpnII	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
DrdI	GACNNNNNNGTC	1 cut(s)	923
DseDI	GACNNNNNNGTC	1 cut(s)	923
EaeI	YGGCCR	1 cut(s)	1056
Eam1104I	CTCTTC	4 cut(s)	644, 656, 831, 1629
EarI	CTCTTC	4 cut(s)	644, 656, 831, 1629
Eco130I	CCWWGG	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	1468
Eco47I	GGWCC	2 cut(s)	1001, 1948
Eco57I	CTGAAG	2 cut(s)	639, 2072
Eco72I	CACGTG	1 cut(s)	818
Eco81I	CCTNAGG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	1392
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	3 cut(s)	1187, 1774, 2106
ErhI	CCWWGG	1 cut(s)	672
FalI	AAGNNNNNCTT	2 cut(s)	1650, 1682
FaqI	GGGAC	3 cut(s)	760, 929, 1961
FauNDI	CATATG	1 cut(s)	1439
FblI	GTMKAC	2 cut(s)	856, 1623
Fnu4HI	GCNGC	6 cut(s)	1026, 1038, 1688, 1695, 1698, 1976
FokI	GGATG	4 cut(s)	188, 1133, 1429, 2125
Fsp4HI	GCNGC	6 cut(s)	1026, 1038, 1688, 1695, 1698, 1976
FspBI	CTAG	6 cut(s)	213, 330, 353, 1722, 1997, 2066
GluI	GCNGC	6 cut(s)	1026, 1038, 1688, 1695, 1698, 1976
HaeIII	GGCC	4 cut(s)	1058, 1468, 1587, 2126
HapII	CCGG	2 cut(s)	2110, 2186
HincII	GTYRAC	3 cut(s)	694, 857, 1248
HindII	GTYRAC	3 cut(s)	694, 857, 1248
HindIII	AAGCTT	3 cut(s)	1088, 1781, 2270
HinfI	GANTC	9 cut(s)	65, 455, 614, 882, 890, 902, 1071, 1548, 1967
HpaI	GTTAAC	1 cut(s)	1248
HpaII	CCGG	2 cut(s)	2110, 2186
HphI	GGTGA	7 cut(s)	416, 584, 716, 983, 2023, 2173, 2270
Hpy166II	GTNNAC	5 cut(s)	694, 857, 1248, 1624, 1926
Hpy188I	TCNGA	8 cut(s)	144, 511, 619, 849, 889, 963, 1227, 1353
Hpy188III	TCNNGA	9 cut(s)	12, 314, 485, 1273, 1450, 1568, 1667, 2110, 2141
Hpy8I	GTNNAC	5 cut(s)	694, 857, 1248, 1624, 1926
Hpy99I	CGWCG	1 cut(s)	858
HpyCH4III	ACNGT	7 cut(s)	163, 738, 1279, 1621, 1882, 1935, 2059
HpyCH4IV	ACGT	3 cut(s)	817, 865, 918
HpyF10VI	GCNNNNNNNGC	7 cut(s)	838, 1034, 1046, 1055, 1103, 1727, 2282
HpyF3I	CTNAG	6 cut(s)	336, 486, 606, 726, 960, 1979
HpySE526I	ACGT	3 cut(s)	817, 865, 918
Kpn2I	TCCGGA	1 cut(s)	2109
KspAI	GTTAAC	1 cut(s)	1248
Kzo9I	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	4 cut(s)	78, 805, 1557, 2188
Lsp1109I	GCAGC	6 cut(s)	1012, 1024, 1681, 1684, 1699, 1987
LweI	GCATC	4 cut(s)	166, 249, 1708, 1759
MaeI	CTAG	6 cut(s)	213, 330, 353, 1722, 1997, 2066
MaeII	ACGT	3 cut(s)	817, 865, 918
MaeIII	GTNAC	3 cut(s)	163, 1442, 2179
MalI	GATC	8 cut(s)	411, 579, 814, 851, 1317, 1403, 1572, 2064
MboI	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
MfeI	CAATTG	2 cut(s)	170, 1552
MflI	RGATCY	4 cut(s)	409, 577, 849, 2062
MlsI	TGGCCA	1 cut(s)	1058
MluI	ACGCGT	1 cut(s)	2168
MluNI	TGGCCA	1 cut(s)	1058
MlyI	GAGTC	4 cut(s)	74, 876, 1542, 1961
MmeI	TCCRAC	1 cut(s)	741
Mox20I	TGGCCA	1 cut(s)	1058
Mph1103I	ATGCAT	3 cut(s)	1187, 1774, 2106
MroI	TCCGGA	1 cut(s)	2109
MroXI	GAANNNNTTC	5 cut(s)	624, 768, 2162, 2199, 2304
MscI	TGGCCA	1 cut(s)	1058
MseI	TTAA	7 cut(s)	420, 809, 1247, 1370, 1538, 1866, 2268
Msp20I	TGGCCA	1 cut(s)	1058
MspA1I	CMGCKG	1 cut(s)	1963
MspCI	CTTAAG	1 cut(s)	808
MspI	CCGG	2 cut(s)	2110, 2186
MspR9I	CCNGG	2 cut(s)	1394, 2186
MunI	CAATTG	2 cut(s)	170, 1552
MvaI	CCWGG	1 cut(s)	1394
MvnI	CGCG	1 cut(s)	2170
MwoI	GCNNNNNNNGC	7 cut(s)	838, 1034, 1046, 1055, 1103, 1727, 2282
NciI	CCSGG	1 cut(s)	2186
NdeI	CATATG	1 cut(s)	1439
NdeII	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
NlaIV	GGNNCC	2 cut(s)	74, 1949
NmuCI	GTSAC	2 cut(s)	1442, 2179
NsiI	ATGCAT	3 cut(s)	1187, 1774, 2106
NspI	RCATGY	2 cut(s)	427, 1025
PaeI	GCATGC	1 cut(s)	1025
PceI	AGGCCT	1 cut(s)	1468
PciI	ACATGT	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	862
PdmI	GAANNNNTTC	5 cut(s)	624, 768, 2162, 2199, 2304
PfeI	GAWTC	5 cut(s)	455, 614, 890, 902, 1071
PflFI	GACNNNGTC	1 cut(s)	1628
PkrI	GCNGC	6 cut(s)	1027, 1039, 1689, 1696, 1699, 1977
PleI	GAGTC	4 cut(s)	73, 876, 1542, 1961
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
PpsI	GAGTC	4 cut(s)	73, 876, 1542, 1961
Ppu21I	YACGTR	2 cut(s)	818, 866
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	1392
PspCI	CACGTG	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	1392
PspN4I	GGNNCC	2 cut(s)	74, 1949
PspPI	GGNCC	3 cut(s)	1001, 1585, 1948
PsuI	RGATCY	4 cut(s)	409, 577, 849, 2062
PsyI	GACNNNGTC	1 cut(s)	1628
PvuII	CAGCTG	1 cut(s)	1963
RsaI	GTAC	1 cut(s)	2049
RsaNI	GTAC	1 cut(s)	2048
SalI	GTCGAC	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	7 cut(s)	420, 809, 1247, 1370, 1538, 1866, 2268
SatI	GCNGC	6 cut(s)	1026, 1038, 1688, 1695, 1698, 1976
Sau3AI	GATC	8 cut(s)	409, 577, 812, 849, 1315, 1401, 1570, 2062
Sau96I	GGNCC	3 cut(s)	1001, 1585, 1948
SchI	GAGTC	4 cut(s)	74, 876, 1542, 1961
ScrFI	CCNGG	2 cut(s)	1394, 2186
SfaNI	GCATC	4 cut(s)	166, 249, 1708, 1759
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	1001, 1948
SmlI	CTYRAG	2 cut(s)	808, 1150
SmoI	CTYRAG	2 cut(s)	808, 1150
SpeI	ACTAGT	1 cut(s)	212
SphI	GCATGC	1 cut(s)	1025
SseBI	AGGCCT	1 cut(s)	1468
SsiI	CCGC	2 cut(s)	1243, 1482
SspI	AATATT	1 cut(s)	1144
SspMI	CTAG	6 cut(s)	213, 330, 353, 1722, 1997, 2066
StuI	AGGCCT	1 cut(s)	1468
StyD4I	CCNGG	2 cut(s)	1392, 2184
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	7 cut(s)	163, 738, 1279, 1621, 1882, 1935, 2059
TaiI	ACGT	3 cut(s)	820, 868, 921
TaqI	TCGA	4 cut(s)	856, 1074, 1632, 2203
TaqII	GACCGA	2 cut(s)	27, 31
TfiI	GAWTC	5 cut(s)	455, 614, 890, 902, 1071
Tru1I	TTAA	7 cut(s)	420, 809, 1247, 1370, 1538, 1866, 2268
Tru9I	TTAA	7 cut(s)	420, 809, 1247, 1370, 1538, 1866, 2268
TscAI	CASTG	3 cut(s)	1071, 1351, 1595
TseFI	GTSAC	2 cut(s)	1442, 2179
TseI	GCWGC	6 cut(s)	1025, 1037, 1687, 1694, 1697, 1975
Tsp45I	GTSAC	2 cut(s)	1442, 2179
TspGWI	ACGGA	4 cut(s)	550, 764, 842, 2110
TspRI	CASTG	3 cut(s)	1071, 1351, 1595
Tth111I	GACNNNGTC	1 cut(s)	1628
Vha464I	CTTAAG	1 cut(s)	808
VpaK11BI	GGWCC	2 cut(s)	1001, 1948
XapI	RAATTY	5 cut(s)	130, 438, 1333, 2003, 2216
XceI	RCATGY	2 cut(s)	427, 1025
XmiI	GTMKAC	2 cut(s)	856, 1623
XmnI	GAANNNNTTC	5 cut(s)	624, 768, 2162, 2199, 2304
XspI	CTAG	6 cut(s)	213, 330, 353, 1722, 1997, 2066
Zsp2I	ATGCAT	3 cut(s)	1187, 1774, 2106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.