Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Forward (+)

7722336 .. 7722707

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTCTCCCTTTTGAAAGGAACGCCAAACTTGGCTACTTTGCACATAGAGGCTGGCCGGACTGGAAGCAGATATAGATCATCATCTTATGGCAATATGTCAGTCTGGGAGTTGCAAAAGCTTGCTTTACATAACCTAAAGGAGGTGACAATAAAGCTTTCCAGTGGAGGTAATGGAATCAGCTTTACACAGTATATCATCCATCACGCTCTACAGTTGCAGAAAATGGTCATCTATTATTTACCTGAGCAATCTTATAAAGTCAGGAGGTACAAATGGCCAAGGACTTCGAATGCTAAAGTTGTCTTTCACGTGCGAGAAGATAAATATGAGAGCATAGATAATGTGTTTGATTTCCTGGATTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

123

Amino Acids

14.37

Weight (kDa)

9.58

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AcoI	YGGCCR	2 cut(s)	55, 278
AcvI	CACGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	3 cut(s)	121, 157, 183
AluI	AGCT	3 cut(s)	121, 157, 183
Alw26I	GTCTC	1 cut(s)	10
AoxI	GGCC	2 cut(s)	55, 278
AsuHPI	GGTGA	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	313
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	2 cut(s)	76, 82
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	67, 162
Bse8I	GATNNNNATC	2 cut(s)	76, 82
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	198
BseJI	GATNNNNATC	2 cut(s)	76, 82
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	67, 162
BshFI	GGCC	2 cut(s)	57, 280
BsiSI	CCGG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	57, 280
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	57, 280
BspCNI	CTCAG	1 cut(s)	238
BspT104I	TTCGAA	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	67, 162
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	192, 216
BstBAI	YACGTR	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	55, 123
BstDEI	CTNAG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	57, 280
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	55, 123
Csp6I	GTAC	1 cut(s)	271
CviJI	RGCY	7 cut(s)	35, 53, 57, 121, 157, 183, 280
CviKI_1	RGCY	7 cut(s)	35, 53, 57, 121, 157, 183, 280
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
EaeI	YGGCCR	2 cut(s)	55, 278
Eco130I	CCWWGG	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	10
Eco72I	CACGTG	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaiI	YATR	9 cut(s)	47, 75, 90, 98, 132, 195, 258, 330, 338
FokI	GGATG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	57, 280
HapII	CCGG	1 cut(s)	58
HindIII	AAGCTT	2 cut(s)	119, 155
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	192, 216
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	43, 115, 220
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	39, 48, 71, 91, 175, 250, 258, 344
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	1 cut(s)	332
MlsI	TGGCCA	1 cut(s)	280
MluNI	TGGCCA	1 cut(s)	280
MnlI	CCTC	4 cut(s)	43, 136, 161, 261
Mox20I	TGGCCA	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	280
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	359
NdeII	GATC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	290
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	357
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	357
PspCI	CACGTG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	357
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	9 cut(s)	123, 138, 147, 159, 172, 185, 247, 272, 315
SfcI	CTRYAG	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	192, 216
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.