Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Forward (+)

40523921 .. 40530033

Gene Structure 6113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2487 bp

ATGGCCCTGCTATTTCCTTTTGGCTTTATTGTTAGTCAATTACTCGAACAAGTACAGTTGGGAAGAATGGAGAAATCAAGACAAGAAAAGCGAAAAGAAGCTCGGTCGGCCAAAAATGCCAGAAAAAACGAGTCTTGGCTCCAAAGACAGAAATCTCAAAAGCTCAAAAGCTCAAAATCTACAGAGAAACCACAAAATTCTTCTGTTCAGAATGTGAAAGGCGAAACAGTTACCCAATTGGATGCTACTTCTGGGAGAAGTAGGAATATGATAAAAACTAGTATGGGGGTGGAAAAAGAAGTTGAAAATACTAAATCAGAGGCTCCAGAACATAATTATCCAAAACCATCAAAGGCAATGCGAGGAGACAAGATATCAAAGAGAACCCCAAAAACAAAGTTTGAGAAGTTTCTTGAACTGGATAATACTAGGGCTGAGGAGGATTTGGAACTAGAAAGGAAACTTGCAAAGAAACTCAAAGTGAAGGGTGGAAAATTGAAGGGTGAGGATCTTGGTCTTAACATGTTGTTTGAAGGAATTTCATCTTTTGCTGATTCATTGGGAAACAAAGAAGTGGCGTATCCTGAGGCATTGCCTTCTAAAAAATCTGAAAAAAGCTCTCCAAGAAAGAAACGGAAGAAGGAAAAGTTATTACCTGATGACTTGAAGGGTGAAGATCCAAAGGTTGTTGTCACAGATGGTGCTGAGGTGGAATCTGAAGATTTTCCTTCCAAGTCATCTACAAGGAAGAGACAGAGGAAGAGAAATTCCTTGGAGGAGACAAAAGAGGTCAACAAGGAAGGTGATATGAACATTGAGGTATCTAAGCCAATGGAATCATGTGGGACGGATATTGAGTTGGAAAAAGTTCCTGCCAAGACACCTAAAAAATATGTAGCTCCTCACTTAAGATCACGTGCAGGGAATGAGCTTGAAGAGCATAGTCAGATCCGTCGACAATTACGTGGTCTTCTAAATAGGCTCTCGGAATCCAATGTGGAATCTATTACAGGGGACGTGTCAGTCCTCGTGCGTTCCATTCCTCGTGGTATTGCCTCTCAGATATTTGGTGAGGAGGTATTAGCCTCATGTGTTCATGGTCCTCGAGGAAATGAACAGCATGCTGCTGTTTTTGCTGCTTTTGTGGCTGGCATGGTCAGTTCAGTGGGAATCGACTTTGGTCCGAAGCTTCTGGCTTTACTTGCTAAAACTTTTGAGGATGAATACCACAAAGAGGACAATATTTCCTTGAGAAATCTTACTCTTTTACTTTCTCAATTATGCATATTTGGAGTTTGTTCAAGTGATTTGATATACGACTTTCTGATTGTTTTGAGCAAGCGGTTAACAGAGATTGATGTCTCCACCATCTTGACAGTTTTGCAATGCTGTGGAATGAAAATAAGGGCTGATGATCCTCTTGCGATGAAAAATTTTATTGCAAGTGTTCAGAATAGAGTGAATGAGTTAAAAGTCTCATGTGGAGATGACCAGGAGAAGATCAATGGCAAAAGGATGGAGTTCATGCTTGAAACCATATGTGACATCAAGAACAACAAGAAAAGGCCTAGAGAAGATACTGCACCTCATACAAGGATAAAGAAATGGCTACAAAAGTTACGTGTAGAAGACATTTTAATAAGAGGACTCAATTGGAGCAAACTTCTTGATCCTAATAAGAAGGGCCAGTGGTGGTTATCTGGGGATATTGCTTCAACGGTAGACAATGTCGAAGCGGTAGCCAACACAATAGACAAAGAGGTTCTTGAAGCCCAGAAACTTTTGCAGCTCGCTGCTGCACAGAGAATGAACACAGATGCTAGAAAGGCAATTTTTTGTATAATTATGAGTGGGGAGGATTACATTGATGCATTTGAAAAGCTTTTGAGATTGGATTTACATGGAAAGCAGGACAGAGAGATAATGCGAGTTCTTGTGGAGTGCTGTTTGCAGGAGAAAGTGTTTAACAAGTATTACACAATCCTGGCTTCCAAATTGTGTGAGCATGACAAAAATCACAAGTTCACATTACAGTTTTGCCTTTGGGACCACTTCAAACAGCTGGACTCAATGCAGCTTAGTAGGTCAATGCACCTAGCCAAATTTGTTGCAGAGATGATAGCCTCTTTCACCCTCTCCCTCGCCGTACTGAAGACGGTAGATCTAGCTGACATCAAGCAACTAACTGCAAAACGGACAATGCATTTCCGGATGTTATTTGAGGCCATCTTTGAGTATCCAGACAGCCTGATATGGAATATATTCACGCGTGTAGCCGTCACCCCGGAGCTTGAAAGTCTTCGACATGGGATCGAATTTTTTATCAAGTATATTGTGGAAACCAATAAATCCTTCGGTGAAAAGTTTAAGCTTGCAAGGAAAGCCCTGAATAATGCTGAAGGGTTTTTGACACTCTTAGCTCCATCAACTATTGTGGTTCATGTTTTGTCGGACTACTTACCAACCTACATGATGGGGTGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

829

Amino Acids

94.04

Weight (kDa)

9.1

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	319 - 520	1.7e-15	MIF4G domain
MA3	PF02847	608 - 709	1.2e-20	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1022
AbsI	CCTCGAGG	1 cut(s)	1104
AccI	GTMKAC	2 cut(s)	955, 1722
AccII	CGCG	1 cut(s)	2269
AccIII	TCCGGA	1 cut(s)	2208
AciI	CCGC	2 cut(s)	1342, 1736
AclWI	GGATC	6 cut(s)	516, 671, 943, 1409, 1664, 2318
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	6 cut(s)	196, 537, 766, 1432, 2102, 2315
AcuI	CTGAAG	3 cut(s)	738, 2171, 2418
AcvI	CACGTG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	54, 2148
AfiI	CCNNNNNNNGG	1 cut(s)	1234
AflII	CTTAAG	1 cut(s)	907
AflIII	ACRYGT	4 cut(s)	522, 1017, 1621, 2267
AhlI	ACTAGT	1 cut(s)	278
AjiI	CACGTC	1 cut(s)	1018
AjnI	CCWGG	2 cut(s)	1491, 1983
AjuI	GAANNNNNNNTTGG	2 cut(s)	2336, 2368
Alw21I	GWGCWC	1 cut(s)	2483
Alw26I	GTCTC	5 cut(s)	360, 745, 773, 1366, 1480
Alw44I	GTGCAC	1 cut(s)	2479
AlwI	GGATC	6 cut(s)	516, 671, 943, 1409, 1664, 2318
Ama87I	CYCGRG	1 cut(s)	1104
Aor13HI	TCCGGA	1 cut(s)	2208
AoxI	GGCC	5 cut(s)	3, 108, 1565, 1684, 2223
ApaLI	GTGCAC	1 cut(s)	2479
ApeKI	GCWGC	6 cut(s)	1124, 1136, 1786, 1793, 1796, 2074
ApoI	RAATTY	6 cut(s)	196, 537, 766, 1432, 2102, 2315
Asp700I	GAANNNNTTC	4 cut(s)	723, 867, 2261, 2298
AspS9I	GGNCC	5 cut(s)	4, 1100, 1181, 1684, 2047
AsuC2I	CCSGG	1 cut(s)	2285
AsuHPI	GGTGA	7 cut(s)	515, 683, 815, 1082, 2122, 2272, 2369
AvaI	CYCGRG	1 cut(s)	1104
AvaII	GGWCC	3 cut(s)	1100, 1181, 2047
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	1 cut(s)	2483
BauI	CACGAG	2 cut(s)	1028, 1044
BbrPI	CACGTG	1 cut(s)	917
BbsI	GAAGAC	4 cut(s)	962, 1635, 2159, 2291
Bbv12I	GWGCWC	1 cut(s)	2483
BbvCI	CCTCAGC	2 cut(s)	435, 705
BbvI	GCAGC	6 cut(s)	1111, 1123, 1780, 1783, 1798, 2086
BccI	CCATC	7 cut(s)	355, 692, 1376, 1510, 2234, 2431, 2467
BceAI	ACGGC	2 cut(s)	2129, 2261
BciT130I	CCWGG	2 cut(s)	1493, 1985
BciVI	GTATCC	2 cut(s)	591, 2247
BcnI	CCSGG	1 cut(s)	2285
BcoDI	GTCTC	5 cut(s)	360, 745, 773, 1366, 1480
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	7 cut(s)	279, 429, 452, 1569, 1821, 2096, 2165
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	907
BfuI	GTATCC	2 cut(s)	591, 2247
BglII	AGATCT	1 cut(s)	2161
BisI	GCNGC	6 cut(s)	1125, 1137, 1787, 1794, 1797, 2075
BlsI	GCNGC	6 cut(s)	1126, 1138, 1788, 1795, 1798, 2076
Bme1390I	CCNGG	3 cut(s)	1493, 1985, 2285
Bme18I	GGWCC	3 cut(s)	1100, 1181, 2047
BmeT110I	CYCGRG	1 cut(s)	1104
BmgBI	CACGTC	1 cut(s)	1018
BmgT120I	GGNCC	5 cut(s)	4, 1100, 1181, 1684, 2047
BmiI	GGNNCC	3 cut(s)	140, 324, 2048
BmrFI	CCNGG	3 cut(s)	1493, 1985, 2285
BmsI	GCATC	3 cut(s)	232, 1807, 1858
BoxI	GACNNNNGTC	1 cut(s)	1179
BpiI	GAAGAC	4 cut(s)	962, 1635, 2159, 2291
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	2 cut(s)	435, 705
BpuEI	CTTGAG	1 cut(s)	1270
BpuMI	CCSGG	1 cut(s)	2285
BsaAI	YACGTR	3 cut(s)	917, 965, 1622
BsaJI	CCNNGG	2 cut(s)	771, 2283
BsaWI	WCCGGW	1 cut(s)	2208
BsaXI	ACNNNNNCTCC	2 cut(s)	1946, 1976
Bsc4I	CCNNNNNNNGG	1 cut(s)	1234
Bse1I	ACTGG	2 cut(s)	423, 1687
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	3 cut(s)	363, 590, 1391
BseAI	TCCGGA	1 cut(s)	2208
BseBI	CCWGG	2 cut(s)	1493, 1985
BseDI	CCNNGG	2 cut(s)	771, 2283
BseGI	GGATG	4 cut(s)	247, 1225, 1521, 2217
BseLI	CCNNNNNNNGG	1 cut(s)	1234
BseMI	GCAATG	3 cut(s)	363, 590, 1391
BseMII	CTCAG	4 cut(s)	426, 576, 696, 1073
BseNI	ACTGG	2 cut(s)	423, 1687
BseRI	GAGGAG	5 cut(s)	378, 452, 791, 891, 1088
BseSI	GKGCMC	1 cut(s)	2483
BseXI	GCAGC	6 cut(s)	1111, 1123, 1780, 1783, 1798, 2086
BsgI	GTGCAG	3 cut(s)	939, 1566, 1782
Bsh1236I	CGCG	1 cut(s)	2269
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	5 cut(s)	5, 110, 1567, 1686, 2225
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	2483
BsiHKCI	CYCGRG	1 cut(s)	1104
BsiSI	CCGG	2 cut(s)	2209, 2285
BslFI	GGGAC	3 cut(s)	859, 1028, 2060
BslI	CCNNNNNNNGG	1 cut(s)	1234
BsmAI	GTCTC	5 cut(s)	360, 745, 773, 1366, 1480
BsmFI	GGGAC	3 cut(s)	859, 1028, 2060
BsnI	GGCC	5 cut(s)	5, 110, 1567, 1686, 2225
BsoBI	CYCGRG	1 cut(s)	1104
Bsp1286I	GDGCHC	1 cut(s)	2483
Bsp13I	TCCGGA	1 cut(s)	2208
Bsp143I	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
BspACI	CCGC	2 cut(s)	1342, 1736
BspANI	GGCC	5 cut(s)	5, 110, 1567, 1686, 2225
BspCNI	CTCAG	4 cut(s)	427, 577, 697, 1072
BspEI	TCCGGA	1 cut(s)	2208
BspFNI	CGCG	1 cut(s)	2269
BspLI	GGNNCC	3 cut(s)	140, 324, 2048
BspPI	GGATC	6 cut(s)	516, 671, 943, 1409, 1664, 2318
BspQI	GCTCTTC	1 cut(s)	930
BspTI	CTTAAG	1 cut(s)	907
BsrDI	GCAATG	3 cut(s)	363, 590, 1391
BsrI	ACTGG	2 cut(s)	423, 1687
BssECI	CCNNGG	2 cut(s)	771, 2283
BssMI	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
BssSI	CACGAG	2 cut(s)	1028, 1044
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	2 cut(s)	1028, 1044
Bst2UI	CCWGG	2 cut(s)	1493, 1985
Bst4CI	ACNGT	6 cut(s)	57, 229, 1378, 1720, 2034, 2158
Bst6I	CTCTTC	3 cut(s)	743, 755, 930
BstAFI	CTTAAG	1 cut(s)	907
BstBAI	YACGTR	3 cut(s)	917, 965, 1622
BstC8I	GCNNGC	5 cut(s)	1122, 1150, 1340, 1791, 2373
BstDEI	CTNAG	7 cut(s)	435, 585, 705, 825, 1059, 2078, 2416
BstF5I	GGATG	4 cut(s)	247, 1225, 1521, 2217
BstFNI	CGCG	1 cut(s)	2269
BstKTI	GATC	9 cut(s)	511, 679, 914, 951, 1417, 1503, 1672, 2164, 2313
BstMAI	GTCTC	5 cut(s)	360, 745, 773, 1366, 1480
BstMBI	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 116, 937, 1133, 1145, 1202, 1826, 2381
BstNI	CCWGG	2 cut(s)	1493, 1985
BstNSI	RCATGY	2 cut(s)	526, 1124
BstPAI	GACNNNNGTC	1 cut(s)	1179
BstSCI	CCNGG	3 cut(s)	1491, 1983, 2283
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	2483
BstUI	CGCG	1 cut(s)	2269
BstV1I	GCAGC	6 cut(s)	1111, 1123, 1780, 1783, 1798, 2086
BstV2I	GAAGAC	4 cut(s)	962, 1635, 2159, 2291
BstX2I	RGATCY	4 cut(s)	508, 676, 948, 2161
BstYI	RGATCY	4 cut(s)	508, 676, 948, 2161
Bsu36I	CCTNAGG	1 cut(s)	585
BsuI	GTATCC	2 cut(s)	591, 2247
BsuRI	GGCC	5 cut(s)	5, 110, 1567, 1686, 2225
BtgZI	GCGATG	1 cut(s)	1439
BtrI	CACGTC	1 cut(s)	1018
BtsCI	GGATG	4 cut(s)	247, 1225, 1521, 2217
BtsIMutI	CAGTG	2 cut(s)	1170, 1694
Cac8I	GCNNGC	5 cut(s)	1122, 1150, 1340, 1791, 2373
Cfr13I	GGNCC	5 cut(s)	4, 1100, 1181, 1684, 2047
Csp6I	GTAC	2 cut(s)	53, 2147
CspCI	CAANNNNNGTGG	2 cut(s)	2415, 2450
CviQI	GTAC	2 cut(s)	53, 2147
DdeI	CTNAG	7 cut(s)	435, 585, 705, 825, 1059, 2078, 2416
DpnI	GATC	9 cut(s)	510, 678, 913, 950, 1416, 1502, 1671, 2163, 2312
DpnII	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
DrdI	GACNNNNNNGTC	1 cut(s)	1022
DseDI	GACNNNNNNGTC	1 cut(s)	1022
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	3 cut(s)	743, 755, 930
EarI	CTCTTC	3 cut(s)	743, 755, 930
Eco130I	CCWWGG	1 cut(s)	771
Eco147I	AGGCCT	1 cut(s)	1567
Eco32I	GATATC	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	1100, 1181, 2047
Eco57I	CTGAAG	3 cut(s)	738, 2171, 2418
Eco72I	CACGTG	1 cut(s)	917
Eco81I	CCTNAGG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	1104
EcoRII	CCWGG	2 cut(s)	1491, 1983
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	771
EcoT22I	ATGCAT	3 cut(s)	1286, 1873, 2205
ErhI	CCWWGG	1 cut(s)	771
FalI	AAGNNNNNCTT	2 cut(s)	1749, 1781
FaqI	GGGAC	3 cut(s)	859, 1028, 2060
FauNDI	CATATG	1 cut(s)	1538
FblI	GTMKAC	2 cut(s)	955, 1722
Fnu4HI	GCNGC	6 cut(s)	1125, 1137, 1787, 1794, 1797, 2075
FokI	GGATG	4 cut(s)	254, 1232, 1528, 2224
Fsp4HI	GCNGC	6 cut(s)	1125, 1137, 1787, 1794, 1797, 2075
FspBI	CTAG	7 cut(s)	279, 429, 452, 1569, 1821, 2096, 2165
GluI	GCNGC	6 cut(s)	1125, 1137, 1787, 1794, 1797, 2075
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	5 cut(s)	5, 110, 1567, 1686, 2225
HapII	CCGG	2 cut(s)	2209, 2285
HincII	GTYRAC	3 cut(s)	793, 956, 1347
HindII	GTYRAC	3 cut(s)	793, 956, 1347
HindIII	AAGCTT	3 cut(s)	1187, 1880, 2369
HinfI	GANTC	9 cut(s)	131, 554, 713, 836, 989, 1001, 1170, 1647, 2066
HpaI	GTTAAC	1 cut(s)	1347
HpaII	CCGG	2 cut(s)	2209, 2285
HphI	GGTGA	7 cut(s)	515, 683, 815, 1082, 2122, 2272, 2369
Hpy166II	GTNNAC	6 cut(s)	793, 956, 1347, 1723, 2025, 2481
Hpy8I	GTNNAC	6 cut(s)	793, 956, 1347, 1723, 2025, 2481
Hpy99I	CGWCG	1 cut(s)	957
HpyCH4III	ACNGT	6 cut(s)	57, 229, 1378, 1720, 2034, 2158
HpyCH4IV	ACGT	4 cut(s)	916, 964, 1017, 1621
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 116, 937, 1133, 1145, 1202, 1826, 2381
HpyF3I	CTNAG	7 cut(s)	435, 585, 705, 825, 1059, 2078, 2416
HpySE526I	ACGT	4 cut(s)	916, 964, 1017, 1621
Kpn2I	TCCGGA	1 cut(s)	2208
KspAI	GTTAAC	1 cut(s)	1347
Kzo9I	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	6 cut(s)	144, 328, 904, 1656, 2287, 2425
Lsp1109I	GCAGC	6 cut(s)	1111, 1123, 1780, 1783, 1798, 2086
LweI	GCATC	3 cut(s)	232, 1807, 1858
MaeI	CTAG	7 cut(s)	279, 429, 452, 1569, 1821, 2096, 2165
MaeII	ACGT	4 cut(s)	916, 964, 1017, 1621
MaeIII	GTNAC	5 cut(s)	229, 691, 1541, 1617, 2278
MalI	GATC	9 cut(s)	510, 678, 913, 950, 1416, 1502, 1671, 2163, 2312
MboI	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
MfeI	CAATTG	2 cut(s)	236, 1651
MflI	RGATCY	4 cut(s)	508, 676, 948, 2161
MhlI	GDGCHC	1 cut(s)	2483
MluI	ACGCGT	1 cut(s)	2267
MlyI	GAGTC	3 cut(s)	140, 1641, 2060
MmeI	TCCRAC	2 cut(s)	840, 2430
Mph1103I	ATGCAT	3 cut(s)	1286, 1873, 2205
MroI	TCCGGA	1 cut(s)	2208
MroXI	GAANNNNTTC	4 cut(s)	723, 867, 2261, 2298
MseI	TTAA	8 cut(s)	519, 908, 1346, 1469, 1637, 1965, 2367, 2485
MspA1I	CMGCKG	1 cut(s)	2062
MspCI	CTTAAG	1 cut(s)	907
MspI	CCGG	2 cut(s)	2209, 2285
MspR9I	CCNGG	3 cut(s)	1493, 1985, 2285
MunI	CAATTG	2 cut(s)	236, 1651
MvaI	CCWGG	2 cut(s)	1493, 1985
MvnI	CGCG	1 cut(s)	2269
MwoI	GCNNNNNNNGC	8 cut(s)	107, 116, 937, 1133, 1145, 1202, 1826, 2381
NciI	CCSGG	1 cut(s)	2285
NdeI	CATATG	1 cut(s)	1538
NdeII	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
NlaIV	GGNNCC	3 cut(s)	140, 324, 2048
NmuCI	GTSAC	3 cut(s)	691, 1541, 2278
NsiI	ATGCAT	3 cut(s)	1286, 1873, 2205
NspI	RCATGY	2 cut(s)	526, 1124
PaeI	GCATGC	1 cut(s)	1124
PaeR7I	CTCGAG	1 cut(s)	1104
PceI	AGGCCT	1 cut(s)	1567
PciI	ACATGT	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	1 cut(s)	961
PdmI	GAANNNNTTC	4 cut(s)	723, 867, 2261, 2298
PfeI	GAWTC	6 cut(s)	554, 713, 836, 989, 1001, 1170
PflFI	GACNNNGTC	1 cut(s)	1727
PkrI	GCNGC	6 cut(s)	1126, 1138, 1788, 1795, 1798, 2076
PleI	GAGTC	3 cut(s)	139, 1641, 2060
PmaCI	CACGTG	1 cut(s)	917
PmlI	CACGTG	1 cut(s)	917
PpsI	GAGTC	3 cut(s)	139, 1641, 2060
Ppu21I	YACGTR	3 cut(s)	917, 965, 1622
PscI	ACATGT	1 cut(s)	522
PshAI	GACNNNNGTC	1 cut(s)	1179
Psp6I	CCWGG	2 cut(s)	1491, 1983
PspCI	CACGTG	1 cut(s)	917
PspGI	CCWGG	2 cut(s)	1491, 1983
PspN4I	GGNNCC	3 cut(s)	140, 324, 2048
PspPI	GGNCC	5 cut(s)	4, 1100, 1181, 1684, 2047
PspXI	VCTCGAGB	1 cut(s)	1104
PsuI	RGATCY	4 cut(s)	508, 676, 948, 2161
PsyI	GACNNNGTC	1 cut(s)	1727
PvuII	CAGCTG	1 cut(s)	2062
RsaI	GTAC	2 cut(s)	54, 2148
RsaNI	GTAC	2 cut(s)	53, 2147
SalI	GTCGAC	1 cut(s)	954
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	8 cut(s)	519, 908, 1346, 1469, 1637, 1965, 2367, 2485
SatI	GCNGC	6 cut(s)	1125, 1137, 1787, 1794, 1797, 2075
Sau3AI	GATC	9 cut(s)	508, 676, 911, 948, 1414, 1500, 1669, 2161, 2310
Sau96I	GGNCC	5 cut(s)	4, 1100, 1181, 1684, 2047
SchI	GAGTC	3 cut(s)	140, 1641, 2060
ScrFI	CCNGG	3 cut(s)	1493, 1985, 2285
SduI	GDGCHC	1 cut(s)	2483
SfaNI	GCATC	3 cut(s)	232, 1807, 1858
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	1104
SinI	GGWCC	3 cut(s)	1100, 1181, 2047
SlaI	CTCGAG	1 cut(s)	1104
SmlI	CTYRAG	3 cut(s)	907, 1104, 1249
SmoI	CTYRAG	3 cut(s)	907, 1104, 1249
SpeI	ACTAGT	1 cut(s)	278
SphI	GCATGC	1 cut(s)	1124
SseBI	AGGCCT	1 cut(s)	1567
SsiI	CCGC	2 cut(s)	1342, 1736
SspI	AATATT	1 cut(s)	1243
SspMI	CTAG	7 cut(s)	279, 429, 452, 1569, 1821, 2096, 2165
StuI	AGGCCT	1 cut(s)	1567
StyD4I	CCNGG	3 cut(s)	1491, 1983, 2283
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	6 cut(s)	57, 229, 1378, 1720, 2034, 2158
TaiI	ACGT	4 cut(s)	919, 967, 1020, 1624
TaqI	TCGA	7 cut(s)	45, 955, 1105, 1173, 1731, 2302, 2313
TaqII	GACCGA	1 cut(s)	93
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	6 cut(s)	554, 713, 836, 989, 1001, 1170
Tru1I	TTAA	8 cut(s)	519, 908, 1346, 1469, 1637, 1965, 2367, 2485
Tru9I	TTAA	8 cut(s)	519, 908, 1346, 1469, 1637, 1965, 2367, 2485
TscAI	CASTG	2 cut(s)	1170, 1694
TseFI	GTSAC	3 cut(s)	691, 1541, 2278
TseI	GCWGC	6 cut(s)	1124, 1136, 1786, 1793, 1796, 2074
Tsp45I	GTSAC	3 cut(s)	691, 1541, 2278
TspGWI	ACGGA	4 cut(s)	649, 863, 941, 2209
TspRI	CASTG	2 cut(s)	1170, 1694
Tth111I	GACNNNGTC	1 cut(s)	1727
Vha464I	CTTAAG	1 cut(s)	907
VneI	GTGCAC	1 cut(s)	2479
VpaK11BI	GGWCC	3 cut(s)	1100, 1181, 2047
XapI	RAATTY	6 cut(s)	196, 537, 766, 1432, 2102, 2315
XceI	RCATGY	2 cut(s)	526, 1124
XhoI	CTCGAG	1 cut(s)	1104
XmiI	GTMKAC	2 cut(s)	955, 1722
XmnI	GAANNNNTTC	4 cut(s)	723, 867, 2261, 2298
XspI	CTAG	7 cut(s)	279, 429, 452, 1569, 1821, 2096, 2165
Zsp2I	ATGCAT	3 cut(s)	1286, 1873, 2205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.