Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005956.1

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Reverse (-)

36124 .. 39552

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005956.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggccagttcagtgggaatcgactttggtgcgaagcttctagctttacttgctaaaacttttgaggatgagtaccacaaagaggacaatatttccttgagaaatcttactcttttactctctcaattatgcatatttggagtttgttcgagtgatttgatatacaactttttgcttgttttgagcaatcggttaacagaggttgatgtctccaccatgttgactcttttgcaatgctgtggaatgaaaataagggctgatgatcctcttgcgatgaaaaatttttttgcgagtgttcagaataaagtgaatgagttaaaagcctcatgtggagatgaccaggagaagatcaatggcaaaaggatggggttcatgcttgaaaccatatgtgacatcaagaacaacaagaaaaggcctaaagaagatactgcacctcatacaaggataaagaaatggctacaaaagttacgggaggaagacattttaataagaggactcaattggagcaaacttcttgatcctaataagaagggccagtggtggtcatctggggatattgattcaacagcttcaacactcgctgctggacagagaatgaacaaagatgctagaaaggcaattttttgtataattatgagcggggaggattacgttgatgcatttgagaatcttttgagattggatttacatggaaagcaggagaaagtgtttaacaagtattacacaattctggcttccaaattgtgcgagcatgacaaaaatcacaagttcacattacagttttgcctttgggaccacttcaaacagctggactcaatgcagctgaataggtcattacacctagccaaatttgttgcagagatggtagcctctatcaccctctcccttgcggtactgaagactgtaaatctagctgacatcaagcaacttactgcaaaaaggacaatgtatttccggatgttatttgaggccatctttgagtatccagatagccttgtatggaatatattcacgcgagtagctgtcaccccggagcttgaaagtcttcgacatgggatcgaattttttatcaagtatattgtggaaaccaataaatccctcagtgaaaagtttaagcttgcaaagaaagccctgaataatgctgaaggggacctcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

386

Amino Acids

44.27

Weight (kDa)

8.68

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	639
AccII	CGCG	1 cut(s)	1015
AccIII	TCCGGA	1 cut(s)	954
AciI	CCGC	2 cut(s)	639, 890
AclWI	GGATC	3 cut(s)	257, 512, 1064
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	280, 848, 1061
AcuI	CTGAAG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	74, 894
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	5 cut(s)	380, 564, 573, 802, 1040
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	9 cut(s)	37, 44, 569, 808, 823, 914, 1022, 1036, 1117
AluI	AGCT	9 cut(s)	37, 44, 569, 808, 823, 914, 1022, 1036, 1117
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	257, 512, 1064
Aor13HI	TCCGGA	1 cut(s)	954
AoxI	GGCC	4 cut(s)	3, 413, 532, 969
ApeKI	GCWGC	2 cut(s)	581, 820
ApoI	RAATTY	3 cut(s)	280, 848, 1061
Asp700I	GAANNNNTTC	2 cut(s)	1007, 1044
AspS9I	GGNCC	3 cut(s)	532, 793, 1150
AsuC2I	CCSGG	1 cut(s)	1031
AsuHPI	GGTGA	2 cut(s)	868, 1018
AvaII	GGWCC	2 cut(s)	793, 1150
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	3 cut(s)	483, 905, 1037
BbvI	GCAGC	2 cut(s)	568, 832
BccI	CCATC	3 cut(s)	358, 856, 980
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	993
BcnI	CCSGG	1 cut(s)	1031
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	4 cut(s)	41, 609, 842, 911
BfuI	GTATCC	1 cut(s)	993
BisI	GCNGC	2 cut(s)	582, 821
BlsI	GCNGC	2 cut(s)	583, 822
Bme1390I	CCNGG	2 cut(s)	341, 1031
Bme18I	GGWCC	2 cut(s)	793, 1150
BmgT120I	GGNCC	3 cut(s)	532, 793, 1150
BmiI	GGNNCC	2 cut(s)	794, 1151
BmrFI	CCNGG	2 cut(s)	341, 1031
BmsI	GCATC	2 cut(s)	595, 646
BpiI	GAAGAC	3 cut(s)	483, 905, 1037
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	1031
BsaJI	CCNNGG	1 cut(s)	1029
BsaWI	WCCGGW	1 cut(s)	954
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	6, 535
Bse3DI	GCAATG	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	1029
BseGI	GGATG	3 cut(s)	73, 369, 963
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	1114
BseNI	ACTGG	2 cut(s)	6, 535
BseXI	GCAGC	2 cut(s)	568, 832
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	1015
BshFI	GGCC	4 cut(s)	5, 415, 534, 971
BsiSI	CCGG	2 cut(s)	955, 1031
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	4 cut(s)	5, 415, 534, 971
Bsp13I	TCCGGA	1 cut(s)	954
Bsp143I	GATC	4 cut(s)	262, 348, 517, 1056
BspACI	CCGC	2 cut(s)	639, 890
BspANI	GGCC	4 cut(s)	5, 415, 534, 971
BspCNI	CTCAG	1 cut(s)	1113
BspEI	TCCGGA	1 cut(s)	954
BspFNI	CGCG	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	794, 1151
BspPI	GGATC	3 cut(s)	257, 512, 1064
BsrBI	CCGCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	6, 535
BssECI	CCNNGG	1 cut(s)	1029
BssMI	GATC	4 cut(s)	262, 348, 517, 1056
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	780, 904
BstC8I	GCNNGC	2 cut(s)	749, 1119
BstDEI	CTNAG	1 cut(s)	1100
BstF5I	GGATG	3 cut(s)	73, 369, 963
BstFNI	CGCG	1 cut(s)	1015
BstKTI	GATC	4 cut(s)	265, 351, 520, 1059
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	262, 348, 517, 1056
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 614, 1127
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	339, 1029
BstUI	CGCG	1 cut(s)	1015
BstV1I	GCAGC	2 cut(s)	568, 832
BstV2I	GAAGAC	3 cut(s)	483, 905, 1037
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	993
BsuRI	GGCC	4 cut(s)	5, 415, 534, 971
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	3 cut(s)	73, 369, 963
BtsIMutI	CAGTG	3 cut(s)	18, 542, 1108
Cac8I	GCNNGC	2 cut(s)	749, 1119
Cfr13I	GGNCC	3 cut(s)	532, 793, 1150
Csp6I	GTAC	2 cut(s)	73, 893
CviAII	CATG	7 cut(s)	217, 327, 373, 689, 752, 1052, 1156
CviQI	GTAC	2 cut(s)	73, 893
DdeI	CTNAG	1 cut(s)	1100
DpnI	GATC	4 cut(s)	264, 350, 519, 1058
DpnII	GATC	4 cut(s)	262, 348, 517, 1056
EaeI	YGGCCR	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	793, 1150
Eco57I	CTGAAG	1 cut(s)	917
EcoO109I	RGGNCCY	1 cut(s)	1150
EcoRII	CCWGG	1 cut(s)	339
EcoT22I	ATGCAT	2 cut(s)	134, 661
FaeI	CATG	7 cut(s)	220, 330, 376, 692, 755, 1055, 1159
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	7 cut(s)	216, 326, 372, 688, 751, 1051, 1155
FauI	CCCGC	1 cut(s)	632
FauNDI	CATATG	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	582, 821
FokI	GGATG	3 cut(s)	80, 376, 970
Fsp4HI	GCNGC	2 cut(s)	582, 821
FspBI	CTAG	4 cut(s)	41, 609, 842, 911
GluI	GCNGC	2 cut(s)	582, 821
HaeIII	GGCC	4 cut(s)	5, 415, 534, 971
HapII	CCGG	2 cut(s)	955, 1031
Hin1II	CATG	7 cut(s)	220, 330, 376, 692, 755, 1055, 1159
HincII	GTYRAC	2 cut(s)	195, 222
HindII	GTYRAC	2 cut(s)	195, 222
HindIII	AAGCTT	2 cut(s)	35, 1115
HinfI	GANTC	6 cut(s)	18, 223, 495, 560, 667, 812
HpaI	GTTAAC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	955, 1031
HphI	GGTGA	2 cut(s)	868, 1018
Hpy166II	GTNNAC	3 cut(s)	195, 222, 771
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	4 cut(s)	397, 515, 955, 986
Hpy8I	GTNNAC	3 cut(s)	195, 222, 771
HpyAV	CCTTC	2 cut(s)	523, 1139
HpyCH4III	ACNGT	2 cut(s)	780, 904
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	8 cut(s)	132, 232, 431, 659, 820, 857, 935, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 614, 1127
HpyF3I	CTNAG	1 cut(s)	1100
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	7 cut(s)	220, 330, 376, 692, 755, 1055, 1159
Kpn2I	TCCGGA	1 cut(s)	954
KspAI	GTTAAC	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	262, 348, 517, 1056
LmnI	GCTCC	2 cut(s)	504, 1033
Lsp1109I	GCAGC	2 cut(s)	568, 832
LweI	GCATC	2 cut(s)	595, 646
MaeI	CTAG	4 cut(s)	41, 609, 842, 911
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	3 cut(s)	389, 465, 1024
MalI	GATC	4 cut(s)	264, 350, 519, 1058
MbiI	CCGCTC	1 cut(s)	639
MboI	GATC	4 cut(s)	262, 348, 517, 1056
MboII	GAAGA	5 cut(s)	358, 434, 488, 910, 1037
MfeI	CAATTG	1 cut(s)	499
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	125, 280, 499, 618, 630, 726, 740, 848, 1061
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	217, 489, 806
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	134, 661
MroI	TCCGGA	1 cut(s)	954
MroXI	GAANNNNTTC	2 cut(s)	1007, 1044
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	194, 317, 485, 711, 1113
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	808, 823
MspI	CCGG	2 cut(s)	955, 1031
MspR9I	CCNGG	2 cut(s)	341, 1031
MunI	CAATTG	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	1015
MwoI	GCNNNNNNNGC	3 cut(s)	50, 614, 1127
NciI	CCSGG	1 cut(s)	1031
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	4 cut(s)	262, 348, 517, 1056
NlaIII	CATG	7 cut(s)	220, 330, 376, 692, 755, 1055, 1159
NlaIV	GGNNCC	2 cut(s)	794, 1151
NmuCI	GTSAC	2 cut(s)	389, 1024
NsiI	ATGCAT	2 cut(s)	134, 661
PceI	AGGCCT	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	1007, 1044
PfeI	GAWTC	3 cut(s)	18, 560, 667
PkrI	GCNGC	2 cut(s)	583, 822
PleI	GAGTC	3 cut(s)	217, 489, 806
PpsI	GAGTC	3 cut(s)	217, 489, 806
PpuMI	RGGWCCY	1 cut(s)	1150
Psp5II	RGGWCCY	1 cut(s)	1150
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	794, 1151
PspPI	GGNCC	3 cut(s)	532, 793, 1150
PspPPI	RGGWCCY	1 cut(s)	1150
PvuII	CAGCTG	2 cut(s)	808, 823
RsaI	GTAC	2 cut(s)	74, 894
RsaNI	GTAC	2 cut(s)	73, 893
SaqAI	TTAA	5 cut(s)	194, 317, 485, 711, 1113
SatI	GCNGC	2 cut(s)	582, 821
Sau3AI	GATC	4 cut(s)	262, 348, 517, 1056
Sau96I	GGNCC	3 cut(s)	532, 793, 1150
SchI	GAGTC	3 cut(s)	217, 489, 806
ScrFI	CCNGG	2 cut(s)	341, 1031
SfaNI	GCATC	2 cut(s)	595, 646
SinI	GGWCC	2 cut(s)	793, 1150
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	9 cut(s)	125, 280, 499, 618, 630, 726, 740, 848, 1061
SseBI	AGGCCT	1 cut(s)	415
SsiI	CCGC	2 cut(s)	639, 890
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	4 cut(s)	41, 609, 842, 911
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	2 cut(s)	339, 1029
TaaI	ACNGT	2 cut(s)	780, 904
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	4 cut(s)	21, 149, 1048, 1059
TasI	AATT	9 cut(s)	125, 280, 499, 618, 630, 726, 740, 848, 1061
TfiI	GAWTC	3 cut(s)	18, 560, 667
Tru1I	TTAA	5 cut(s)	194, 317, 485, 711, 1113
Tru9I	TTAA	5 cut(s)	194, 317, 485, 711, 1113
TscAI	CASTG	3 cut(s)	18, 542, 1108
TseFI	GTSAC	2 cut(s)	389, 1024
TseI	GCWGC	2 cut(s)	581, 820
Tsp45I	GTSAC	2 cut(s)	389, 1024
TspDTI	ATGAA	4 cut(s)	260, 290, 361, 611
TspRI	CASTG	3 cut(s)	18, 542, 1108
VpaK11BI	GGWCC	2 cut(s)	793, 1150
XapI	RAATTY	3 cut(s)	280, 848, 1061
XmnI	GAANNNNTTC	2 cut(s)	1007, 1044
XspI	CTAG	4 cut(s)	41, 609, 842, 911
Zsp2I	ATGCAT	2 cut(s)	134, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.