Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8456101.1

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 714

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8456101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 419 bp

atggagaaatcaagacaagaaaagcgaaaagaagctcggtcggccaaaaatgccagaaaaaacgagtcttggctccaaagacagaaatctcaaaagctcaaaagctcaaaatctacagagaaacgacaaaattcttctgttcagaatgtgaaagacgaaacagttacccaattggatgctacttctgggagaagtaggaatatgaaaaaaactagtatgggagtggaaaaagaagttgaaaatactaaatcaaaggcgatgcgaggagacaaggtatcaaagagaaccccaaaaacaaagtttgagaagtttcttgaactggataatactagggctgaggaggatttggaactagaaaggaaacttgcaaagaaactcaaagtgaagggtggaaaattgaagggtgaggatcttggtct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

140

Amino Acids

16.11

Weight (kDa)

10.18

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	239, 317, 400
AhlI	ACTAGT	1 cut(s)	212
AluBI	AGCT	3 cut(s)	35, 97, 105
AluI	AGCT	3 cut(s)	35, 97, 105
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	3 cut(s)	213, 330, 353
BfmI	CTRYAG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	2 cut(s)	166, 249
Bpu10I	CCTNAGC	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse1I	ACTGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	279, 353
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	409
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstSFI	CTRYAG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	35, 44, 73, 97, 105, 335
CviKI_1	RGCY	6 cut(s)	35, 44, 73, 97, 105, 335
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	42
FaiI	YATR	2 cut(s)	203, 218
FokI	GGATG	1 cut(s)	188
FspBI	CTAG	3 cut(s)	213, 330, 353
HaeIII	GGCC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	12, 314
HpyAV	CCTTC	2 cut(s)	379, 394
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	3 cut(s)	67, 171, 305
LweI	GCATC	2 cut(s)	166, 249
MaeI	CTAG	3 cut(s)	213, 330, 353
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	1 cut(s)	126
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	3 cut(s)	130, 170, 395
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	257, 331, 334, 400
MunI	CAATTG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NdeII	GATC	1 cut(s)	409
NlaIV	GGNNCC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	409
Sau3AI	GATC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	74
SetI	ASST	4 cut(s)	37, 99, 107, 276
SfaNI	GCATC	2 cut(s)	166, 249
SfcI	CTRYAG	1 cut(s)	114
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	3 cut(s)	130, 170, 395
SspMI	CTAG	3 cut(s)	213, 330, 353
TaaI	ACNGT	1 cut(s)	163
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	130, 170, 395
TspDTI	ATGAA	1 cut(s)	218
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	3 cut(s)	213, 330, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.