Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Reverse (-)

30885062 .. 30891401

Gene Structure 6340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGGCGGCGACGGCGGCCATTTTTGAGAGGAGGTTTTGGGGGGGGTCTTGGCTCTTCGGCTCTGGGGATAGTGAAACTATAAATGGCTTTATTGTTAGTCAATTACTCGAACAAGTACAGTTGGGAAGAATGGAGAAATCAAGACAAGAAAAGCGAAAAGAAGCTCGGTCGGCCAAAAATGCCAGAAAAAACGAGTCTTGGCTCCAAAGACAGAAATCTCAAAAGCTCAAAAGCTCAAAATCTACAGAGAAACGACAAAATTCTTCTGTTCAGAATGTGAAAGACGAAACAGTTACCCAATTGGATGCTACTTCTGGGAGAAGTAGGAATATGAAAAAAACTAGTATGGGAGTGGAAAAAGAAGTTGAAAATACTATATCAGAGGCTCCAGAACATAATTATCCAAAACCATCAAAGGCGATGCGAGGAGACAAGGTATCAAAGAGAACCCCAAAAACAAAGTTTGAGAAGTTTCTTGAACTGGATAATACTAGGGCTGAGGAGGATTTGGAACTAGAAAGGAAACTTGCAAACAAACTCAAAGTGAAGGGTGGAAAATTGAAAGGTGAGGATCTTGGTCTTAACATGTTGTTTGAAGGAATTTCATCTTTTGCTGATTCATTGGGAAACAAAGAAGTCGCGTATCCTGAGGCATTGCCTTCTAAAAAATCTGAAAAAAGCTCTCCAAGAAAGAAACGGAAGAAGGAAAAGTTATTACCTGATGACTTGAAGGGTGAAGATCCAAAGGTTGTCGTCACAGATGGCGCTGAGGTGGAATCTGAAGATTTTCCTTCCAAGTCATCTACAAGGAAGAGACAGAAGAAGAGAAAGTCCTTGGAGGAGGCAAAAGAGGTCAACAAGGAAGGTGATATGAACATTGAGGTATCTAAGCCAATGGAGTCATGTGGGACGGATATTGTGTTGGAAAAAGTTCCTGCCAAGACACCCGAAAAATATGTAGCTCCTCACTTAAGATCACGTGCAGGGAATGAGCTTGAAGAGCATAGTCAGATCCGTCGACAATTACGTGGTCTTCTAAATAGGCTCTCGGAATCTAATGTGGAATCTATTACAGGGGACGTGTCAGTCCTCATGCGTTCCATTCCTCGTGGTATTGCCTCTCAGATATTTGGTGAGGAGGTATTAGCCTCATGTGTTCATGGTCCTCGTGGAAATGAACAGCATGCTGCTGTTTTTGCTGCTTTTGTGGCTGGCATGGCCAGTTCAGTGGGAATCGACTTTGGTGCGAAGCTTCTGGCTTTACTTGCTAAAACTTTTCAGGATGAATACCACAAAGAGGACAATATTTCCTTGAGAAATCTTACTCTTTTACTCTCTCAATTATGCATATTTGGACTTTGTTCAAGTGATTTGATATACGACTTTCTGATTGTTTTGAGCAAGCGGTTAACAGAGATTGATGTCTCCACCATCTTGACAGTTTTGCAATGCTGTGGAATGAAAATAAGGGCTGATGATCCTCTTGCGATGAAAAATTTTATTGCAAGTGTTCAAAATAGAGTGAATGAGTTAAAAGTCTCATGTGGAGATGACCAGGAGAAGATCAATGGCAAAAGGATGGAGTTCATGCTTGAAACCATATGTGACATCAAGAACAACAAGAAAAGGCCTAAAGAAGATACTGCACCTCATACAAGGATAAAGAAATGGCTACAAAAGTTACGTGTAGAAGACATTTTAATAAGAGGACTCAATTGGAGCAAACTTCTTGATCCTAATAAGAAGGGCCAGTGGTGGTTATCTGGGGATATTGCTTCAACAGTAGACAATGTCGAAGAGGTAGCCAACACAATAGACAAAGAGGTTCTGGAAGCCCAGAAACTTTTGCAGCTCGCTGCTGCACAGAGAATGAACACAGATGCTAGAAAGGCAATTTTTTGTATAATTATGAGTGGAGAGGATTACATTGATGCATTTGAAAAGCTTTTGAGATTGGATTTACATGGAAAGCAGGACAGAGAGATAATGCGAGTTCTTGTGGAGTGCTGTTTGCAGGAGAAAGTGTTTAACAAGTATTACACAATTCTGGCTTCCAAATTGTGTGAGCATGACAAAAATCACAAGTTCACATTACAGTTTTGCCTTTGGGACCACTTCAAACAGCTGGACTCAATGCAGCTTAGTAGGTCAATGCACCTAGCCAAATTTGTTGCAGAGATGATAGCCTCTTTCACCCTCTCCCTCGCTGTACTGAAGACGGTAGATCTAGCTGACATCAAGCAACTAACTGCAAAACGGACAATGCATTTCCGGATGTTATTTGAGGCCATCTTTGAGTATCCAGACAGCCTGATATGGAATATATTCACGCGTGTAGCCGTCACCCCGGAGCTGGAAAGTCTTCAACATGGGATTGAATTTTTTATCAAGTATATTGTGGAAACCAATAAATCCCTCGGTGAAAAGTTTAAGCTTGCAAGGAAAGCCCTGAATAATGCTGAAGGGGTTCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

825

Amino Acids

93.63

Weight (kDa)

9.06

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	340 - 541	1.1e-16	MIF4G domain
MA3	PF02847	629 - 730	1.2e-20	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1085
AccI	GTMKAC	2 cut(s)	1018, 1785
AccII	CGCG	2 cut(s)	641, 2332
AccIII	TCCGGA	1 cut(s)	2271
AciI	CCGC	3 cut(s)	5, 14, 1405
AclWI	GGATC	5 cut(s)	579, 734, 1006, 1472, 1727
AcoI	YGGCCR	3 cut(s)	15, 171, 1218
AcsI	RAATTY	5 cut(s)	259, 600, 1495, 2165, 2378
AcuI	CTGAAG	2 cut(s)	801, 2234
AcvI	CACGTG	1 cut(s)	980
AfaI	GTAC	2 cut(s)	117, 2211
AfiI	CCNNNNNNNGG	2 cut(s)	1297, 2353
AflII	CTTAAG	1 cut(s)	970
AflIII	ACRYGT	4 cut(s)	585, 1080, 1684, 2330
AhlI	ACTAGT	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	1081
AjnI	CCWGG	1 cut(s)	1554
Alw26I	GTCTC	4 cut(s)	423, 808, 1429, 1543
AlwI	GGATC	5 cut(s)	579, 734, 1006, 1472, 1727
Aor13HI	TCCGGA	1 cut(s)	2271
AoxI	GGCC	6 cut(s)	15, 171, 1218, 1628, 1747, 2286
ApeKI	GCWGC	6 cut(s)	1187, 1199, 1849, 1856, 1859, 2137
ApoI	RAATTY	5 cut(s)	259, 600, 1495, 2165, 2378
Asp700I	GAANNNNTTC	5 cut(s)	786, 930, 2324, 2361, 2466
AspLEI	GCGC	1 cut(s)	767
AspS9I	GGNCC	3 cut(s)	1163, 1747, 2110
AsuC2I	CCSGG	1 cut(s)	2348
AsuHPI	GGTGA	7 cut(s)	578, 746, 878, 1145, 2185, 2335, 2432
AvaII	GGWCC	2 cut(s)	1163, 2110
AxyI	CCTNAGG	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	1220
BauI	CACGAG	2 cut(s)	1107, 1167
BbrPI	CACGTG	1 cut(s)	980
BbsI	GAAGAC	4 cut(s)	1025, 1698, 2222, 2354
BbvCI	CCTCAGC	2 cut(s)	498, 768
BbvI	GCAGC	6 cut(s)	1174, 1186, 1843, 1846, 1861, 2149
BccI	CCATC	5 cut(s)	418, 755, 1439, 1573, 2297
BceAI	ACGGC	2 cut(s)	27, 2324
BcgI	CGANNNNNNTGC	2 cut(s)	1226, 1260
BciT130I	CCWGG	1 cut(s)	1556
BciVI	GTATCC	2 cut(s)	654, 2310
BcnI	CCSGG	1 cut(s)	2348
BcoDI	GTCTC	4 cut(s)	423, 808, 1429, 1543
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	6 cut(s)	342, 492, 515, 1884, 2159, 2228
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	768
BfrI	CTTAAG	1 cut(s)	970
BfuI	GTATCC	2 cut(s)	654, 2310
BglII	AGATCT	1 cut(s)	2224
BisI	GCNGC	8 cut(s)	6, 15, 1188, 1200, 1850, 1857, 1860, 2138
BlsI	GCNGC	8 cut(s)	7, 16, 1189, 1201, 1851, 1858, 1861, 2139
Bme1390I	CCNGG	2 cut(s)	1556, 2348
Bme18I	GGWCC	2 cut(s)	1163, 2110
BmgBI	CACGTC	1 cut(s)	1081
BmgT120I	GGNCC	3 cut(s)	1163, 1747, 2110
BmiI	GGNNCC	3 cut(s)	203, 387, 2111
BmrFI	CCNGG	2 cut(s)	1556, 2348
BmsI	GCATC	4 cut(s)	295, 411, 1870, 1921
BpiI	GAAGAC	4 cut(s)	1025, 1698, 2222, 2354
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	2 cut(s)	498, 768
BpuEI	CTTGAG	1 cut(s)	1333
BpuMI	CCSGG	1 cut(s)	2348
BsaAI	YACGTR	3 cut(s)	980, 1028, 1685
BsaJI	CCNNGG	3 cut(s)	834, 2346, 2416
BsaWI	WCCGGW	1 cut(s)	2271
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 2009, 2039
Bsc4I	CCNNNNNNNGG	2 cut(s)	1297, 2353
Bse1I	ACTGG	3 cut(s)	486, 1221, 1750
Bse21I	CCTNAGG	1 cut(s)	648
Bse3DI	GCAATG	2 cut(s)	653, 1454
BseAI	TCCGGA	1 cut(s)	2271
BseBI	CCWGG	1 cut(s)	1556
BseDI	CCNNGG	3 cut(s)	834, 2346, 2416
BseGI	GGATG	4 cut(s)	310, 1288, 1584, 2280
BseLI	CCNNNNNNNGG	2 cut(s)	1297, 2353
BseMI	GCAATG	2 cut(s)	653, 1454
BseMII	CTCAG	4 cut(s)	489, 639, 759, 1136
BseNI	ACTGG	3 cut(s)	486, 1221, 1750
BseRI	GAGGAG	6 cut(s)	43, 441, 515, 854, 954, 1151
BseXI	GCAGC	6 cut(s)	1174, 1186, 1843, 1846, 1861, 2149
BsgI	GTGCAG	3 cut(s)	1002, 1629, 1845
Bsh1236I	CGCG	2 cut(s)	641, 2332
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	6 cut(s)	17, 173, 1220, 1630, 1749, 2288
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	2272, 2348
BslFI	GGGAC	3 cut(s)	922, 1091, 2123
BslI	CCNNNNNNNGG	2 cut(s)	1297, 2353
BsmAI	GTCTC	4 cut(s)	423, 808, 1429, 1543
BsmFI	GGGAC	3 cut(s)	922, 1091, 2123
BsnI	GGCC	6 cut(s)	17, 173, 1220, 1630, 1749, 2288
Bsp13I	TCCGGA	1 cut(s)	2271
Bsp143I	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
BspACI	CCGC	3 cut(s)	5, 14, 1405
BspANI	GGCC	6 cut(s)	17, 173, 1220, 1630, 1749, 2288
BspCNI	CTCAG	4 cut(s)	490, 640, 760, 1135
BspEI	TCCGGA	1 cut(s)	2271
BspFNI	CGCG	2 cut(s)	641, 2332
BspLI	GGNNCC	3 cut(s)	203, 387, 2111
BspPI	GGATC	5 cut(s)	579, 734, 1006, 1472, 1727
BspQI	GCTCTTC	2 cut(s)	59, 993
BspTI	CTTAAG	1 cut(s)	970
BsrDI	GCAATG	2 cut(s)	653, 1454
BsrI	ACTGG	3 cut(s)	486, 1221, 1750
BssECI	CCNNGG	3 cut(s)	834, 2346, 2416
BssMI	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
BssSI	CACGAG	2 cut(s)	1107, 1167
BssT1I	CCWWGG	1 cut(s)	834
Bst2BI	CACGAG	2 cut(s)	1107, 1167
Bst2UI	CCWGG	1 cut(s)	1556
Bst4CI	ACNGT	6 cut(s)	120, 292, 1441, 1783, 2097, 2221
Bst6I	CTCTTC	5 cut(s)	59, 806, 818, 993, 1791
BstAFI	CTTAAG	1 cut(s)	970
BstBAI	YACGTR	3 cut(s)	980, 1028, 1685
BstC8I	GCNNGC	5 cut(s)	1185, 1213, 1403, 1854, 2436
BstDEI	CTNAG	6 cut(s)	498, 648, 768, 888, 1122, 2141
BstF5I	GGATG	4 cut(s)	310, 1288, 1584, 2280
BstFNI	CGCG	2 cut(s)	641, 2332
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	767
BstKTI	GATC	8 cut(s)	574, 742, 977, 1014, 1480, 1566, 1735, 2227
BstMAI	GTCTC	4 cut(s)	423, 808, 1429, 1543
BstMBI	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
BstMCI	CGRYCG	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	1556
BstNSI	RCATGY	2 cut(s)	589, 1187
BstSCI	CCNGG	2 cut(s)	1554, 2346
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	2 cut(s)	641, 2332
BstV1I	GCAGC	6 cut(s)	1174, 1186, 1843, 1846, 1861, 2149
BstV2I	GAAGAC	4 cut(s)	1025, 1698, 2222, 2354
BstX2I	RGATCY	4 cut(s)	571, 739, 1011, 2224
BstXI	CCANNNNNNTGG	1 cut(s)	1228
BstYI	RGATCY	4 cut(s)	571, 739, 1011, 2224
Bsu36I	CCTNAGG	1 cut(s)	648
BsuI	GTATCC	2 cut(s)	654, 2310
BsuRI	GGCC	6 cut(s)	17, 173, 1220, 1630, 1749, 2288
BtgZI	GCGATG	2 cut(s)	434, 1502
BtrI	CACGTC	1 cut(s)	1081
BtsCI	GGATG	4 cut(s)	310, 1288, 1584, 2280
BtsIMutI	CAGTG	2 cut(s)	1233, 1757
Cac8I	GCNNGC	5 cut(s)	1185, 1213, 1403, 1854, 2436
CfoI	GCGC	1 cut(s)	767
Cfr13I	GGNCC	3 cut(s)	1163, 1747, 2110
Csp6I	GTAC	2 cut(s)	116, 2210
CviQI	GTAC	2 cut(s)	116, 2210
DdeI	CTNAG	6 cut(s)	498, 648, 768, 888, 1122, 2141
DpnI	GATC	8 cut(s)	573, 741, 976, 1013, 1479, 1565, 1734, 2226
DpnII	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
DrdI	GACNNNNNNGTC	1 cut(s)	1085
DseDI	GACNNNNNNGTC	1 cut(s)	1085
EaeI	YGGCCR	3 cut(s)	15, 171, 1218
Eam1104I	CTCTTC	5 cut(s)	59, 806, 818, 993, 1791
EarI	CTCTTC	5 cut(s)	59, 806, 818, 993, 1791
Eco130I	CCWWGG	1 cut(s)	834
Eco147I	AGGCCT	1 cut(s)	1630
Eco47I	GGWCC	2 cut(s)	1163, 2110
Eco57I	CTGAAG	2 cut(s)	801, 2234
Eco72I	CACGTG	1 cut(s)	980
Eco81I	CCTNAGG	1 cut(s)	648
EcoRII	CCWGG	1 cut(s)	1554
EcoT14I	CCWWGG	1 cut(s)	834
EcoT22I	ATGCAT	3 cut(s)	1349, 1936, 2268
ErhI	CCWWGG	1 cut(s)	834
FaqI	GGGAC	3 cut(s)	922, 1091, 2123
FauNDI	CATATG	1 cut(s)	1601
FblI	GTMKAC	2 cut(s)	1018, 1785
Fnu4HI	GCNGC	8 cut(s)	6, 15, 1188, 1200, 1850, 1857, 1860, 2138
FokI	GGATG	4 cut(s)	317, 1295, 1591, 2287
Fsp4HI	GCNGC	8 cut(s)	6, 15, 1188, 1200, 1850, 1857, 1860, 2138
FspBI	CTAG	6 cut(s)	342, 492, 515, 1884, 2159, 2228
GlaI	GCGC	1 cut(s)	766
GluI	GCNGC	8 cut(s)	6, 15, 1188, 1200, 1850, 1857, 1860, 2138
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	6 cut(s)	17, 173, 1220, 1630, 1749, 2288
HapII	CCGG	2 cut(s)	2272, 2348
HhaI	GCGC	1 cut(s)	767
Hin6I	GCGC	1 cut(s)	765
HinP1I	GCGC	1 cut(s)	765
HincII	GTYRAC	3 cut(s)	856, 1019, 1410
HindII	GTYRAC	3 cut(s)	856, 1019, 1410
HindIII	AAGCTT	3 cut(s)	1250, 1943, 2432
HinfI	GANTC	9 cut(s)	194, 617, 776, 899, 1052, 1064, 1233, 1710, 2129
HpaI	GTTAAC	1 cut(s)	1410
HpaII	CCGG	2 cut(s)	2272, 2348
HphI	GGTGA	7 cut(s)	578, 746, 878, 1145, 2185, 2335, 2432
Hpy166II	GTNNAC	5 cut(s)	856, 1019, 1410, 1786, 2088
Hpy188I	TCNGA	8 cut(s)	273, 382, 673, 781, 1011, 1051, 1125, 1389
Hpy8I	GTNNAC	5 cut(s)	856, 1019, 1410, 1786, 2088
Hpy99I	CGWCG	2 cut(s)	13, 1020
HpyAV	CCTTC	9 cut(s)	541, 590, 669, 697, 724, 801, 857, 1738, 2456
HpyCH4III	ACNGT	6 cut(s)	120, 292, 1441, 1783, 2097, 2221
HpyCH4IV	ACGT	4 cut(s)	979, 1027, 1080, 1684
HpyF3I	CTNAG	6 cut(s)	498, 648, 768, 888, 1122, 2141
HpySE526I	ACGT	4 cut(s)	979, 1027, 1080, 1684
HspAI	GCGC	1 cut(s)	765
Kpn2I	TCCGGA	1 cut(s)	2271
KspAI	GTTAAC	1 cut(s)	1410
Kzo9I	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
LguI	GCTCTTC	2 cut(s)	59, 993
LmnI	GCTCC	5 cut(s)	207, 391, 967, 1719, 2350
Lsp1109I	GCAGC	6 cut(s)	1174, 1186, 1843, 1846, 1861, 2149
LweI	GCATC	4 cut(s)	295, 411, 1870, 1921
MaeI	CTAG	6 cut(s)	342, 492, 515, 1884, 2159, 2228
MaeII	ACGT	4 cut(s)	979, 1027, 1080, 1684
MaeIII	GTNAC	5 cut(s)	292, 754, 1604, 1680, 2341
MalI	GATC	8 cut(s)	573, 741, 976, 1013, 1479, 1565, 1734, 2226
MboI	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
MfeI	CAATTG	2 cut(s)	299, 1714
MflI	RGATCY	4 cut(s)	571, 739, 1011, 2224
MlsI	TGGCCA	1 cut(s)	1220
MluI	ACGCGT	1 cut(s)	2330
MluNI	TGGCCA	1 cut(s)	1220
MlyI	GAGTC	4 cut(s)	203, 908, 1704, 2123
MmeI	TCCRAC	1 cut(s)	903
Mox20I	TGGCCA	1 cut(s)	1220
Mph1103I	ATGCAT	3 cut(s)	1349, 1936, 2268
MroI	TCCGGA	1 cut(s)	2271
MroXI	GAANNNNTTC	5 cut(s)	786, 930, 2324, 2361, 2466
MscI	TGGCCA	1 cut(s)	1220
MseI	TTAA	7 cut(s)	582, 971, 1409, 1532, 1700, 2028, 2430
Msp20I	TGGCCA	1 cut(s)	1220
MspA1I	CMGCKG	1 cut(s)	2125
MspCI	CTTAAG	1 cut(s)	970
MspI	CCGG	2 cut(s)	2272, 2348
MspR9I	CCNGG	2 cut(s)	1556, 2348
MunI	CAATTG	2 cut(s)	299, 1714
MvaI	CCWGG	1 cut(s)	1556
MvnI	CGCG	2 cut(s)	641, 2332
NciI	CCSGG	1 cut(s)	2348
NdeI	CATATG	1 cut(s)	1601
NdeII	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
NlaIV	GGNNCC	3 cut(s)	203, 387, 2111
NmuCI	GTSAC	3 cut(s)	754, 1604, 2341
NsiI	ATGCAT	3 cut(s)	1349, 1936, 2268
NspI	RCATGY	2 cut(s)	589, 1187
PaeI	GCATGC	1 cut(s)	1187
PceI	AGGCCT	1 cut(s)	1630
PciI	ACATGT	1 cut(s)	585
PciSI	GCTCTTC	2 cut(s)	59, 993
PcsI	WCGNNNNNNNCGW	1 cut(s)	1024
PdmI	GAANNNNTTC	5 cut(s)	786, 930, 2324, 2361, 2466
PfeI	GAWTC	5 cut(s)	617, 776, 1052, 1064, 1233
PflFI	GACNNNGTC	1 cut(s)	1790
PkrI	GCNGC	8 cut(s)	7, 16, 1189, 1201, 1851, 1858, 1861, 2139
PleI	GAGTC	4 cut(s)	202, 907, 1704, 2123
PmaCI	CACGTG	1 cut(s)	980
PmlI	CACGTG	1 cut(s)	980
PpsI	GAGTC	4 cut(s)	202, 907, 1704, 2123
Ppu21I	YACGTR	3 cut(s)	980, 1028, 1685
PscI	ACATGT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	1554
PspCI	CACGTG	1 cut(s)	980
PspGI	CCWGG	1 cut(s)	1554
PspN4I	GGNNCC	3 cut(s)	203, 387, 2111
PspPI	GGNCC	3 cut(s)	1163, 1747, 2110
PsuI	RGATCY	4 cut(s)	571, 739, 1011, 2224
PsyI	GACNNNGTC	1 cut(s)	1790
PvuII	CAGCTG	1 cut(s)	2125
RsaI	GTAC	2 cut(s)	117, 2211
RsaNI	GTAC	2 cut(s)	116, 2210
SalI	GTCGAC	1 cut(s)	1017
SapI	GCTCTTC	2 cut(s)	59, 993
SaqAI	TTAA	7 cut(s)	582, 971, 1409, 1532, 1700, 2028, 2430
SatI	GCNGC	8 cut(s)	6, 15, 1188, 1200, 1850, 1857, 1860, 2138
Sau3AI	GATC	8 cut(s)	571, 739, 974, 1011, 1477, 1563, 1732, 2224
Sau96I	GGNCC	3 cut(s)	1163, 1747, 2110
SchI	GAGTC	4 cut(s)	203, 908, 1704, 2123
ScrFI	CCNGG	2 cut(s)	1556, 2348
SfaNI	GCATC	4 cut(s)	295, 411, 1870, 1921
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	1163, 2110
SmlI	CTYRAG	2 cut(s)	970, 1312
SmoI	CTYRAG	2 cut(s)	970, 1312
SpeI	ACTAGT	1 cut(s)	341
SphI	GCATGC	1 cut(s)	1187
SseBI	AGGCCT	1 cut(s)	1630
SsiI	CCGC	3 cut(s)	5, 14, 1405
SspI	AATATT	1 cut(s)	1306
SspMI	CTAG	6 cut(s)	342, 492, 515, 1884, 2159, 2228
StuI	AGGCCT	1 cut(s)	1630
StyD4I	CCNGG	2 cut(s)	1554, 2346
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	6 cut(s)	120, 292, 1441, 1783, 2097, 2221
TaiI	ACGT	4 cut(s)	982, 1030, 1083, 1687
TaqI	TCGA	4 cut(s)	108, 1018, 1236, 1794
TaqII	GACCGA	1 cut(s)	156
TatI	WGTACW	2 cut(s)	115, 2209
TauI	GCSGC	2 cut(s)	8, 17
TfiI	GAWTC	5 cut(s)	617, 776, 1052, 1064, 1233
Tru1I	TTAA	7 cut(s)	582, 971, 1409, 1532, 1700, 2028, 2430
Tru9I	TTAA	7 cut(s)	582, 971, 1409, 1532, 1700, 2028, 2430
TscAI	CASTG	2 cut(s)	1233, 1757
TseFI	GTSAC	3 cut(s)	754, 1604, 2341
TseI	GCWGC	6 cut(s)	1187, 1199, 1849, 1856, 1859, 2137
Tsp45I	GTSAC	3 cut(s)	754, 1604, 2341
TspGWI	ACGGA	4 cut(s)	712, 926, 1004, 2272
TspRI	CASTG	2 cut(s)	1233, 1757
Tth111I	GACNNNGTC	1 cut(s)	1790
Vha464I	CTTAAG	1 cut(s)	970
VpaK11BI	GGWCC	2 cut(s)	1163, 2110
XapI	RAATTY	5 cut(s)	259, 600, 1495, 2165, 2378
XceI	RCATGY	2 cut(s)	589, 1187
XmiI	GTMKAC	2 cut(s)	1018, 1785
XmnI	GAANNNNTTC	5 cut(s)	786, 930, 2324, 2361, 2466
XspI	CTAG	6 cut(s)	342, 492, 515, 1884, 2159, 2228
Zsp2I	ATGCAT	3 cut(s)	1349, 1936, 2268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.