Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Reverse (-)

24869544 .. 24878614

Gene Structure 9071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGAGAAATCAAGACAAGAAAAGCGAAAAGAAGCTCGGTCGGCCAAAAATGCCAGAAAAAACGAGTCTTGGCTCCAAAGACAGAAATCTCAAAAGCTCAAAAGCTCAAAATCTACAGAGAAACGACAAAATTCTTCTGTTCAGAATGTGAAAGACGAAACAGTTACCCAATTGGATGCTACTTCTGGGAGAAGTAGGAATATGAAAAAAACTAGTATGGGAGTGGAAAAAGAAGTTGAAAATACTAAATCAGAGGCTCCAGAACATAATTATCCAAAACCATCAAAGGCGATGCGAGGAGACAAGGTATCAAAGAGAACCCCAAAAACAAAGTTTGAGAAGTTTCTTGAACTGGATAATACTAGGGCTGAGGAGGATTTGGAACTAGAAAGGAAACTTGCAAAGAAACTCAAAGTGAAGGGTGGAAAATTGAAGGGTGAGGATCTTGGTCTTAACACGTTGTTTGAAGGAATTTCATCTTTTGCTGATTCATTGGGAAACAAAGAAGTGGTGTATCCTGAGGCATTGCCTTCTAAAAAATCTGAAAAAAGCTCTCCAAGAAAGAAACGGAAGAAGGAAAAGTTATTACCTGATGACTTGAAGGGTGAAGATCCAATGGTTGTCGTCACAGATGGCGCTGAGGTGGAATCTGAAGATTTTCCTTCCAAGTCATCTACAAGGAAGAGACAGAAGAAGAGAAAGTCCTTGGAGGAGACAAAAGAGGTCAACAAGGAAGGTGATATGAACATTGAGGTTAGGCCAATGGAGTCATGTGGGACGGATATTGTGTTGGAAAAAGTTCCTGCCAAGACACCCAAAAAATATGTAGCTCCTCACTTAAGATCACGTGCAGGGAATGAGCTTGAAGAGCATAGTCAGATCCGTCGACAATTACGTGGTCTTCTAAATAGGCTCTCGGAATCTAATGTGGAATCTATTACAGGGGACGTGTCAGTCCTCATGCGTTCCATTCCTCGTGGTATTGCCTCTCAGATATTTGGTGAGGAGGTATTAGCCTCATGTGTTCATGGTCCTCGTGGAAATGAACAGCATGCTGCTGTTTTTGCTGCTTTTGTGGCTGGCATGGCCAGTTCAGTGGGAATCGACTTTGGTGCGAAGCTTCTGGCTTTACTTGCTAAAACTTTTGAGGATGAATACCACAAAGAGGACAATATTTCCTTGAGAAATATTACTCTTTTACTCTCTCAATTATGCATATTTGGAGTTTGTTCAAGTGATTTGATATACGACTTTCTGATTGTTTTGAGCAAGCGGTTAACAGAGATTGATGTCTCCACCATCTTGACAGTTTTACAATGCTGTGGAATGAAAATAAGGGCTGATGATCCTCTTGCGATGAAAAATTTTATTGCAAGTGTTCAGAATAGAGTGAATGAGTTAAAAGTCTCATGTGGAGATGACCAGGAGAAGATCAATGGCAAAAGGATGGAGTTCATGCTTGAAACCATATGTGACATCAAGAACAACAAGAAAAGGCCTAAAGAAGATACCGCACCTCATACAAGGATAAAGAAATGGCTACAAAAGTTACGTGTAGAAGACATTTTAATAAGAGGACTCAATTGGAGCAAACTTCTTGATCCTAATAAGAAGGGCCAGTGGTGGTTATCTGGGGATATTGCTTCAACAGTAGACAATGTCGAAGAGGTAGCCAACACAATAGACAAAGAGGTTCTTGAAGCCCAGAAACTTTTGCAGCTCGCTGCTGCACAGAGAATGAACACAGATGCTAGAAAGGCAATTTTTTGTATAATTATGAGTGGGGAGGATTACATTGATGCATTTGAAAAGCTTTTGAGATTGGATTTACATGGAAAGCAGGACAGAGAGATAATGCGAGTTCTTGTGGAGTGCTGTTTGCAGGAGAAAGTGTTTAACAAGTATTACACAGTTCTGGCTTCCAAATTGTGTGAGCATGACAAAAATCACAAGTTCACATTACAGTTTTGCCTTTGGGACCACTTCAAACAGCTGGACTCAATGCAGCTTAGTAGGTCAATGCACCTAGCCAAATTTGTTGCAGAGATGATAGCCTCTTTCACCCTCTCCCTCGCCGTACTGAAGACGGTAGATCTAGCTGACATCAAGCAACTAACTGCAAAACGGACAATGCATTTCCGGATGTTATTTGAGGCCATCTTTGAGTATCCAGACAGCCTGATATGGAATATATTCACGCGTGTAGCTGTCACCCCGGAGCTTGAAAGTCTTCAACATGGGATTGAATTTTTTATCAAGTATATTGTGGAAACCAATAAATCCCTCGGTGAAAAGTTTAAGCTTGCAAGGAAAGCCCTGAATAATGCTGAAGGGGTTCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

781

Amino Acids

88.87

Weight (kDa)

9.15

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	296 - 497	1.1e-16	MIF4G domain
MA3	PF02847	585 - 686	7.9e-21	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	953
AccI	GTMKAC	2 cut(s)	886, 1653
AccII	CGCG	1 cut(s)	2200
AccIII	TCCGGA	1 cut(s)	2139
AciI	CCGC	2 cut(s)	1273, 1512
AclWI	GGATC	5 cut(s)	450, 605, 874, 1340, 1595
AcoI	YGGCCR	2 cut(s)	42, 1086
AcsI	RAATTY	5 cut(s)	130, 471, 1363, 2033, 2246
AcuI	CTGAAG	2 cut(s)	672, 2102
AcvI	CACGTG	1 cut(s)	848
AfaI	GTAC	1 cut(s)	2079
AfiI	CCNNNNNNNGG	1 cut(s)	1165
AflII	CTTAAG	1 cut(s)	838
AflIII	ACRYGT	4 cut(s)	456, 948, 1552, 2198
AhlI	ACTAGT	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	949
AjnI	CCWGG	1 cut(s)	1422
Alw26I	GTCTC	5 cut(s)	294, 679, 707, 1297, 1411
AlwI	GGATC	5 cut(s)	450, 605, 874, 1340, 1595
Aor13HI	TCCGGA	1 cut(s)	2139
AoxI	GGCC	6 cut(s)	42, 758, 1086, 1496, 1615, 2154
ApeKI	GCWGC	6 cut(s)	1055, 1067, 1717, 1724, 1727, 2005
ApoI	RAATTY	5 cut(s)	130, 471, 1363, 2033, 2246
Asp700I	GAANNNNTTC	5 cut(s)	657, 798, 2192, 2229, 2334
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	1031, 1615, 1978
AsuC2I	CCSGG	1 cut(s)	2216
AsuHPI	GGTGA	7 cut(s)	449, 617, 749, 1013, 2053, 2203, 2300
AvaII	GGWCC	2 cut(s)	1031, 1978
AxyI	CCTNAGG	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	1088
BauI	CACGAG	2 cut(s)	975, 1035
BbrPI	CACGTG	1 cut(s)	848
BbsI	GAAGAC	4 cut(s)	893, 1566, 2090, 2222
BbvCI	CCTCAGC	2 cut(s)	369, 639
BbvI	GCAGC	6 cut(s)	1042, 1054, 1711, 1714, 1729, 2017
BccI	CCATC	5 cut(s)	289, 626, 1307, 1441, 2165
BceAI	ACGGC	1 cut(s)	2060
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	1 cut(s)	1424
BciVI	GTATCC	2 cut(s)	525, 2178
BcnI	CCSGG	1 cut(s)	2216
BcoDI	GTCTC	5 cut(s)	294, 679, 707, 1297, 1411
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	6 cut(s)	213, 363, 386, 1752, 2027, 2096
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	639
BfrI	CTTAAG	1 cut(s)	838
BfuI	GTATCC	2 cut(s)	525, 2178
BglII	AGATCT	1 cut(s)	2092
BisI	GCNGC	6 cut(s)	1056, 1068, 1718, 1725, 1728, 2006
BlsI	GCNGC	6 cut(s)	1057, 1069, 1719, 1726, 1729, 2007
Bme1390I	CCNGG	2 cut(s)	1424, 2216
Bme18I	GGWCC	2 cut(s)	1031, 1978
BmgBI	CACGTC	1 cut(s)	949
BmgT120I	GGNCC	3 cut(s)	1031, 1615, 1978
BmiI	GGNNCC	3 cut(s)	74, 258, 1979
BmrFI	CCNGG	2 cut(s)	1424, 2216
BmsI	GCATC	4 cut(s)	166, 282, 1738, 1789
BpiI	GAAGAC	4 cut(s)	893, 1566, 2090, 2222
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	369, 639
BpuEI	CTTGAG	1 cut(s)	1201
BpuMI	CCSGG	1 cut(s)	2216
BsaAI	YACGTR	3 cut(s)	848, 896, 1553
BsaJI	CCNNGG	3 cut(s)	705, 2214, 2284
BsaWI	WCCGGW	1 cut(s)	2139
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 1877, 1907
Bsc4I	CCNNNNNNNGG	1 cut(s)	1165
Bse1I	ACTGG	3 cut(s)	357, 1089, 1618
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	524
BseAI	TCCGGA	1 cut(s)	2139
BseBI	CCWGG	1 cut(s)	1424
BseDI	CCNNGG	3 cut(s)	705, 2214, 2284
BseGI	GGATG	4 cut(s)	181, 1156, 1452, 2148
BseLI	CCNNNNNNNGG	1 cut(s)	1165
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	4 cut(s)	360, 510, 630, 1004
BseNI	ACTGG	3 cut(s)	357, 1089, 1618
BseRI	GAGGAG	5 cut(s)	312, 386, 725, 822, 1019
BseXI	GCAGC	6 cut(s)	1042, 1054, 1711, 1714, 1729, 2017
BsgI	GTGCAG	2 cut(s)	870, 1713
Bsh1236I	CGCG	1 cut(s)	2200
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	6 cut(s)	44, 760, 1088, 1498, 1617, 2156
BsiEI	CGRYCG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	2140, 2216
BslFI	GGGAC	3 cut(s)	790, 959, 1991
BslI	CCNNNNNNNGG	1 cut(s)	1165
BsmAI	GTCTC	5 cut(s)	294, 679, 707, 1297, 1411
BsmFI	GGGAC	3 cut(s)	790, 959, 1991
BsnI	GGCC	6 cut(s)	44, 760, 1088, 1498, 1617, 2156
Bsp13I	TCCGGA	1 cut(s)	2139
Bsp143I	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
BspACI	CCGC	2 cut(s)	1273, 1512
BspANI	GGCC	6 cut(s)	44, 760, 1088, 1498, 1617, 2156
BspCNI	CTCAG	4 cut(s)	361, 511, 631, 1003
BspEI	TCCGGA	1 cut(s)	2139
BspFNI	CGCG	1 cut(s)	2200
BspLI	GGNNCC	3 cut(s)	74, 258, 1979
BspPI	GGATC	5 cut(s)	450, 605, 874, 1340, 1595
BspQI	GCTCTTC	1 cut(s)	861
BspTI	CTTAAG	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	3 cut(s)	357, 1089, 1618
BssECI	CCNNGG	3 cut(s)	705, 2214, 2284
BssMI	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
BssSI	CACGAG	2 cut(s)	975, 1035
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	2 cut(s)	975, 1035
Bst2UI	CCWGG	1 cut(s)	1424
Bst4CI	ACNGT	6 cut(s)	163, 1309, 1651, 1912, 1965, 2089
Bst6I	CTCTTC	4 cut(s)	677, 689, 861, 1659
BstAFI	CTTAAG	1 cut(s)	838
BstBAI	YACGTR	3 cut(s)	848, 896, 1553
BstC8I	GCNNGC	5 cut(s)	1053, 1081, 1271, 1722, 2304
BstDEI	CTNAG	5 cut(s)	369, 519, 639, 990, 2009
BstF5I	GGATG	4 cut(s)	181, 1156, 1452, 2148
BstFNI	CGCG	1 cut(s)	2200
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	8 cut(s)	445, 613, 845, 882, 1348, 1434, 1603, 2095
BstMAI	GTCTC	5 cut(s)	294, 679, 707, 1297, 1411
BstMBI	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 50, 868, 1064, 1076, 1085, 1133, 1757, 2312
BstNI	CCWGG	1 cut(s)	1424
BstNSI	RCATGY	1 cut(s)	1055
BstSCI	CCNGG	2 cut(s)	1422, 2214
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	2200
BstV1I	GCAGC	6 cut(s)	1042, 1054, 1711, 1714, 1729, 2017
BstV2I	GAAGAC	4 cut(s)	893, 1566, 2090, 2222
BstX2I	RGATCY	4 cut(s)	442, 610, 879, 2092
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BstYI	RGATCY	4 cut(s)	442, 610, 879, 2092
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	2 cut(s)	525, 2178
BsuRI	GGCC	6 cut(s)	44, 760, 1088, 1498, 1617, 2156
BtgZI	GCGATG	2 cut(s)	305, 1370
BtrI	CACGTC	1 cut(s)	949
BtsCI	GGATG	4 cut(s)	181, 1156, 1452, 2148
BtsIMutI	CAGTG	2 cut(s)	1101, 1625
Cac8I	GCNNGC	5 cut(s)	1053, 1081, 1271, 1722, 2304
CfoI	GCGC	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	1031, 1615, 1978
Csp6I	GTAC	1 cut(s)	2078
CviQI	GTAC	1 cut(s)	2078
DdeI	CTNAG	5 cut(s)	369, 519, 639, 990, 2009
DpnI	GATC	8 cut(s)	444, 612, 844, 881, 1347, 1433, 1602, 2094
DpnII	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
DrdI	GACNNNNNNGTC	1 cut(s)	953
DseDI	GACNNNNNNGTC	1 cut(s)	953
EaeI	YGGCCR	2 cut(s)	42, 1086
Eam1104I	CTCTTC	4 cut(s)	677, 689, 861, 1659
EarI	CTCTTC	4 cut(s)	677, 689, 861, 1659
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	1498
Eco47I	GGWCC	2 cut(s)	1031, 1978
Eco57I	CTGAAG	2 cut(s)	672, 2102
Eco72I	CACGTG	1 cut(s)	848
Eco81I	CCTNAGG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	1422
EcoT14I	CCWWGG	1 cut(s)	705
EcoT22I	ATGCAT	3 cut(s)	1217, 1804, 2136
ErhI	CCWWGG	1 cut(s)	705
FalI	AAGNNNNNCTT	2 cut(s)	1680, 1712
FaqI	GGGAC	3 cut(s)	790, 959, 1991
FauNDI	CATATG	1 cut(s)	1469
FblI	GTMKAC	2 cut(s)	886, 1653
Fnu4HI	GCNGC	6 cut(s)	1056, 1068, 1718, 1725, 1728, 2006
FokI	GGATG	4 cut(s)	188, 1163, 1459, 2155
Fsp4HI	GCNGC	6 cut(s)	1056, 1068, 1718, 1725, 1728, 2006
FspBI	CTAG	6 cut(s)	213, 363, 386, 1752, 2027, 2096
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	6 cut(s)	1056, 1068, 1718, 1725, 1728, 2006
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	6 cut(s)	44, 760, 1088, 1498, 1617, 2156
HapII	CCGG	2 cut(s)	2140, 2216
HhaI	GCGC	1 cut(s)	638
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	3 cut(s)	727, 887, 1278
HindII	GTYRAC	3 cut(s)	727, 887, 1278
HindIII	AAGCTT	3 cut(s)	1118, 1811, 2300
HinfI	GANTC	9 cut(s)	65, 488, 647, 767, 920, 932, 1101, 1578, 1997
HpaI	GTTAAC	1 cut(s)	1278
HpaII	CCGG	2 cut(s)	2140, 2216
HphI	GGTGA	7 cut(s)	449, 617, 749, 1013, 2053, 2203, 2300
Hpy166II	GTNNAC	5 cut(s)	727, 887, 1278, 1654, 1956
Hpy188I	TCNGA	9 cut(s)	144, 253, 544, 652, 879, 919, 993, 1257, 1383
Hpy8I	GTNNAC	5 cut(s)	727, 887, 1278, 1654, 1956
Hpy99I	CGWCG	1 cut(s)	888
HpyCH4III	ACNGT	6 cut(s)	163, 1309, 1651, 1912, 1965, 2089
HpyCH4IV	ACGT	5 cut(s)	458, 847, 895, 948, 1552
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 50, 868, 1064, 1076, 1085, 1133, 1757, 2312
HpyF3I	CTNAG	5 cut(s)	369, 519, 639, 990, 2009
HpySE526I	ACGT	5 cut(s)	458, 847, 895, 948, 1552
HspAI	GCGC	1 cut(s)	636
Kpn2I	TCCGGA	1 cut(s)	2139
KspAI	GTTAAC	1 cut(s)	1278
Kzo9I	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	5 cut(s)	78, 262, 835, 1587, 2218
Lsp1109I	GCAGC	6 cut(s)	1042, 1054, 1711, 1714, 1729, 2017
LweI	GCATC	4 cut(s)	166, 282, 1738, 1789
MaeI	CTAG	6 cut(s)	213, 363, 386, 1752, 2027, 2096
MaeII	ACGT	5 cut(s)	458, 847, 895, 948, 1552
MaeIII	GTNAC	5 cut(s)	163, 625, 1472, 1548, 2209
MalI	GATC	8 cut(s)	444, 612, 844, 881, 1347, 1433, 1602, 2094
MboI	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
MfeI	CAATTG	2 cut(s)	170, 1582
MflI	RGATCY	4 cut(s)	442, 610, 879, 2092
MlsI	TGGCCA	1 cut(s)	1088
MluI	ACGCGT	1 cut(s)	2198
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	4 cut(s)	74, 776, 1572, 1991
MmeI	TCCRAC	1 cut(s)	771
Mox20I	TGGCCA	1 cut(s)	1088
Mph1103I	ATGCAT	3 cut(s)	1217, 1804, 2136
MroI	TCCGGA	1 cut(s)	2139
MroXI	GAANNNNTTC	5 cut(s)	657, 798, 2192, 2229, 2334
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	7 cut(s)	453, 839, 1277, 1400, 1568, 1896, 2298
Msp20I	TGGCCA	1 cut(s)	1088
MspA1I	CMGCKG	1 cut(s)	1993
MspCI	CTTAAG	1 cut(s)	838
MspI	CCGG	2 cut(s)	2140, 2216
MspR9I	CCNGG	2 cut(s)	1424, 2216
MunI	CAATTG	2 cut(s)	170, 1582
MvaI	CCWGG	1 cut(s)	1424
MvnI	CGCG	1 cut(s)	2200
MwoI	GCNNNNNNNGC	9 cut(s)	41, 50, 868, 1064, 1076, 1085, 1133, 1757, 2312
NciI	CCSGG	1 cut(s)	2216
NdeI	CATATG	1 cut(s)	1469
NdeII	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
NlaIV	GGNNCC	3 cut(s)	74, 258, 1979
NmuCI	GTSAC	3 cut(s)	625, 1472, 2209
NsiI	ATGCAT	3 cut(s)	1217, 1804, 2136
NspI	RCATGY	1 cut(s)	1055
PaeI	GCATGC	1 cut(s)	1055
PceI	AGGCCT	1 cut(s)	1498
PciSI	GCTCTTC	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PdmI	GAANNNNTTC	5 cut(s)	657, 798, 2192, 2229, 2334
PfeI	GAWTC	5 cut(s)	488, 647, 920, 932, 1101
PflFI	GACNNNGTC	1 cut(s)	1658
PkrI	GCNGC	6 cut(s)	1057, 1069, 1719, 1726, 1729, 2007
PleI	GAGTC	4 cut(s)	73, 775, 1572, 1991
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
PpsI	GAGTC	4 cut(s)	73, 775, 1572, 1991
Ppu21I	YACGTR	3 cut(s)	848, 896, 1553
Psp6I	CCWGG	1 cut(s)	1422
PspCI	CACGTG	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	1422
PspN4I	GGNNCC	3 cut(s)	74, 258, 1979
PspPI	GGNCC	3 cut(s)	1031, 1615, 1978
PsuI	RGATCY	4 cut(s)	442, 610, 879, 2092
PsyI	GACNNNGTC	1 cut(s)	1658
PvuII	CAGCTG	1 cut(s)	1993
RsaI	GTAC	1 cut(s)	2079
RsaNI	GTAC	1 cut(s)	2078
SalI	GTCGAC	1 cut(s)	885
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	7 cut(s)	453, 839, 1277, 1400, 1568, 1896, 2298
SatI	GCNGC	6 cut(s)	1056, 1068, 1718, 1725, 1728, 2006
Sau3AI	GATC	8 cut(s)	442, 610, 842, 879, 1345, 1431, 1600, 2092
Sau96I	GGNCC	3 cut(s)	1031, 1615, 1978
SchI	GAGTC	4 cut(s)	74, 776, 1572, 1991
ScrFI	CCNGG	2 cut(s)	1424, 2216
SfaNI	GCATC	4 cut(s)	166, 282, 1738, 1789
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	1031, 1978
SmlI	CTYRAG	2 cut(s)	838, 1180
SmoI	CTYRAG	2 cut(s)	838, 1180
SpeI	ACTAGT	1 cut(s)	212
SphI	GCATGC	1 cut(s)	1055
SseBI	AGGCCT	1 cut(s)	1498
SsiI	CCGC	2 cut(s)	1273, 1512
SspI	AATATT	2 cut(s)	1174, 1189
SspMI	CTAG	6 cut(s)	213, 363, 386, 1752, 2027, 2096
StuI	AGGCCT	1 cut(s)	1498
StyD4I	CCNGG	2 cut(s)	1422, 2214
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	6 cut(s)	163, 1309, 1651, 1912, 1965, 2089
TaiI	ACGT	5 cut(s)	461, 850, 898, 951, 1555
TaqI	TCGA	3 cut(s)	886, 1104, 1662
TaqII	GACCGA	1 cut(s)	27
TfiI	GAWTC	5 cut(s)	488, 647, 920, 932, 1101
Tru1I	TTAA	7 cut(s)	453, 839, 1277, 1400, 1568, 1896, 2298
Tru9I	TTAA	7 cut(s)	453, 839, 1277, 1400, 1568, 1896, 2298
TscAI	CASTG	2 cut(s)	1101, 1625
TseFI	GTSAC	3 cut(s)	625, 1472, 2209
TseI	GCWGC	6 cut(s)	1055, 1067, 1717, 1724, 1727, 2005
Tsp45I	GTSAC	3 cut(s)	625, 1472, 2209
TspGWI	ACGGA	4 cut(s)	583, 794, 872, 2140
TspRI	CASTG	2 cut(s)	1101, 1625
Tth111I	GACNNNGTC	1 cut(s)	1658
Vha464I	CTTAAG	1 cut(s)	838
VpaK11BI	GGWCC	2 cut(s)	1031, 1978
XapI	RAATTY	5 cut(s)	130, 471, 1363, 2033, 2246
XceI	RCATGY	1 cut(s)	1055
XmiI	GTMKAC	2 cut(s)	886, 1653
XmnI	GAANNNNTTC	5 cut(s)	657, 798, 2192, 2229, 2334
XspI	CTAG	6 cut(s)	213, 363, 386, 1752, 2027, 2096
Zsp2I	ATGCAT	3 cut(s)	1217, 1804, 2136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.