Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Forward (+)

41908107 .. 41914552

Gene Structure 6446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGAAAAAAACTAGTATGGGAGTGGAAAAAGAAGTTGAAAATACTAAATCAGAGGTTCCAGAACATAATTATCCAAAACCATCAAAGGCGGTGGGAGGAGACAAGGTATCAAAGAGAACCCCAAAAACAAAGTTTGAGAAGTTTCTTGAACTGGATAATACTAGGGCTGAGGAGGATTTGGAACTAGAAAGGAAACTTGCAAAGAAACTCAAAGTGAAGGGTGGAAAATTGAAGGGTGAGGATCTTGGTCTTAACATGTTGTTTGAAGGAATTTCATCTTTTGCTGATTCATTGGGAAACAAAGAAGTGGCATATCCTGAGGCATTGCCTTCTAAAAAATCTGAAAAAACCTCTCCAAGAAAGAAACGGAAGAAGGAAAAATTGTTACCTGATGACTTGAAGGGTGAAGATCCAAAGGTTGTCGTCACAGATGGTGCTGAGGTGGAATCTGAAGATTTTCCTTCCAAATCATCTACAAGGAAGAGACAGAGGAAGAGAAAGTCCTTGGAGGAGACAAAAGAGGTCAACAAGGAAGGTGATCTGAACATTGAGGTATCTAAGCCAATGGAGTCATGTGGGACGGATATTGTGTTGGAAAAAGTTCCTGCCAAGACACCTAAAAAATATGTAGCTCCTCACTTAAGATCACGTGCAGGGAATGAGCTTGAAGAGCATAGTCAGATCCGTCGACAATTACGTGGTCTTCTAAATAGGCTCTCGGAATCTAATGTGGAATCTATTACAGGGGACGTGTCAGTCCTTGTGCGTTCCGTTCCTCGTGGTATTGCCTCTCAGATATTTGGTGAGGAGGTATTAGCCTCATGTGTTCATGGTCCTCGAGGAAATGAACAGCATGCTGCTGTTTTTGCTGCTTTTGTGGCTGGCCTGTCCAGTTCAGTGGGAATCGACTTTGGTGCGAAACTTCTGGCTTTACTTGCTAAAACTTTTGAGGATGAATACCACAAAGAGGACAATATTTCCTTGAGAAATCTTACTCTTTTACTCTCTCAATTATGCATATTTGGAGTTTGTTCAAGTGATTTGATATACGACTTTCTGATTGTTTTGAGCAAGCGGTTAACAGAGATTGATGTCTCCACCATCTTGACAGTTTTGCAATGCTGTGGAATGAAAATAAGGGCTGATGATCCTCTTGCGATGAAAAATTTTATTGCAAGTGTTCAAAATAGAGTGAATGAGTTAAAAGTCTCATGTGGAGATGACCAGGAGAAGATCAATGGCAAAAGGATGGAGTTCATGCTTGAAACCATATGTGACATCAAGAACAACAAGAAAAGGCCTAAAGAAGATACTGCACCTCATACAAGGATAAAGAAATGGCTACAAAAGGTACATGTAGAAGACATTTTAATAAGAGGACTCAATTGGAGCAAACTTCTTGATCCTAATAAGAAGGGCCAGTGGTGGTTATCTGGGGATATTGCTTCAACAGTAGATAATGTCGAAGAGGTTGCCAACACAATAGACAAAGAGGTTCTTGAAGCCCAGAAACTTTTGCAGCTCGCTGCTGCACAGAGAATGAACACAGATGCTAGAAAGGCAATTTTTTGTATAATTATGAGTGGGGAGGATTACATTGATGCATTTGAAAAGCTTTTGAGATTGGATTTACATGGAAAGCAGGACAGAGAGATAATGCGAGTTCTTGTGGAGTGCTGTTTGCAGGAGAAAGTGTTTAACAAGTATTACACAATTCTGGCTTCCAAATTGTGTGAGCATGACAAAAATCACAAGTTCACATTACAGTTTTGCCTTTGGGACCACTTCAAACAGCTGGACTCAATGCAGCTTAGTAGGTCAATGTACCTAGCCAAATTTGTTGCAGAGATGATAGCCTCTTTCACCCTCTCCCTTGCCATACTGAAGACGGTAGATCTAGCTGACATCAAGCAACTAACTGCAAAAAGGACAATGCATTTCCGGATGTTATTTGAGGCCATCTTTGAGTATCCAGACAGCCTGATATGGAATATATTCACGCGTGTAGCCGTTACCCCGGAGCTTGAAAGTCTTCGACATGGGATCGAATTTTTTATCAAGTATATTGTGGAAACCAATAAATCCCTCGGTGAAAAGTTTAAGCTTGCAAGGAAAGCCCTGAATAATACTGAAGGGGTCCTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

715

Amino Acids

81.09

Weight (kDa)

8.72

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	230 - 431	3.1e-17	MIF4G domain
MA3	PF02847	519 - 620	1.9e-21	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	755
AbsI	CCTCGAGG	1 cut(s)	837
AccI	GTMKAC	1 cut(s)	688
AccII	CGCG	1 cut(s)	2002
AccIII	TCCGGA	1 cut(s)	1941
AciI	CCGC	2 cut(s)	89, 1075
AclWI	GGATC	6 cut(s)	249, 404, 676, 1142, 1397, 2051
AcsI	RAATTY	4 cut(s)	270, 1165, 1835, 2048
AcuI	CTGAAG	2 cut(s)	471, 1904
AcvI	CACGTG	1 cut(s)	650
AfaI	GTAC	2 cut(s)	1353, 1826
AfiI	CCNNNNNNNGG	1 cut(s)	967
AflII	CTTAAG	1 cut(s)	640
AflIII	ACRYGT	4 cut(s)	255, 750, 1354, 2000
AhlI	ACTAGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	751
AjnI	CCWGG	1 cut(s)	1224
AluBI	AGCT	9 cut(s)	632, 664, 1522, 1615, 1795, 1810, 1901, 2023, 2104
AluI	AGCT	9 cut(s)	632, 664, 1522, 1615, 1795, 1810, 1901, 2023, 2104
Alw26I	GTCTC	5 cut(s)	93, 478, 506, 1099, 1213
AlwI	GGATC	6 cut(s)	249, 404, 676, 1142, 1397, 2051
Ama87I	CYCGRG	1 cut(s)	837
Aor13HI	TCCGGA	1 cut(s)	1941
AoxI	GGCC	4 cut(s)	883, 1298, 1417, 1956
ApeKI	GCWGC	6 cut(s)	857, 869, 1519, 1526, 1529, 1807
ApoI	RAATTY	4 cut(s)	270, 1165, 1835, 2048
Asp700I	GAANNNNTTC	4 cut(s)	456, 600, 1994, 2031
AspS9I	GGNCC	4 cut(s)	833, 1417, 1780, 2137
AsuC2I	CCSGG	1 cut(s)	2018
AsuHPI	GGTGA	6 cut(s)	248, 416, 548, 815, 1855, 2102
AvaI	CYCGRG	1 cut(s)	837
AvaII	GGWCC	3 cut(s)	833, 1780, 2137
AxyI	CCTNAGG	1 cut(s)	318
BauI	CACGAG	1 cut(s)	777
BbrPI	CACGTG	1 cut(s)	650
BbsI	GAAGAC	4 cut(s)	695, 1368, 1892, 2024
BbvCI	CCTCAGC	2 cut(s)	168, 438
BbvI	GCAGC	6 cut(s)	844, 856, 1513, 1516, 1531, 1819
BccI	CCATC	5 cut(s)	88, 425, 1109, 1243, 1967
BceAI	ACGGC	1 cut(s)	1994
BcgI	CGANNNNNNTGC	4 cut(s)	896, 930, 1454, 1488
BciT130I	CCWGG	1 cut(s)	1226
BciVI	GTATCC	1 cut(s)	1980
BcnI	CCSGG	1 cut(s)	2018
BcoDI	GTCTC	5 cut(s)	93, 478, 506, 1099, 1213
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	6 cut(s)	12, 162, 185, 1554, 1829, 1898
BfrI	CTTAAG	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	1980
BglII	AGATCT	1 cut(s)	1894
BisI	GCNGC	6 cut(s)	858, 870, 1520, 1527, 1530, 1808
BlsI	GCNGC	6 cut(s)	859, 871, 1521, 1528, 1531, 1809
Bme1390I	CCNGG	2 cut(s)	1226, 2018
Bme18I	GGWCC	3 cut(s)	833, 1780, 2137
BmeT110I	CYCGRG	1 cut(s)	837
BmgBI	CACGTC	1 cut(s)	751
BmgT120I	GGNCC	4 cut(s)	833, 1417, 1780, 2137
BmiI	GGNNCC	3 cut(s)	57, 1781, 2138
BmrFI	CCNGG	2 cut(s)	1226, 2018
BmsI	GCATC	2 cut(s)	1540, 1591
BpiI	GAAGAC	4 cut(s)	695, 1368, 1892, 2024
Bpu10I	CCTNAGC	2 cut(s)	168, 438
BpuEI	CTTGAG	1 cut(s)	1003
BpuMI	CCSGG	1 cut(s)	2018
BsaAI	YACGTR	2 cut(s)	650, 698
BsaJI	CCNNGG	3 cut(s)	504, 2016, 2086
BsaWI	WCCGGW	1 cut(s)	1941
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 1679, 1709
Bsc4I	CCNNNNNNNGG	1 cut(s)	967
Bse1I	ACTGG	3 cut(s)	156, 891, 1420
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	323, 1124
BseAI	TCCGGA	1 cut(s)	1941
BseBI	CCWGG	1 cut(s)	1226
BseDI	CCNNGG	3 cut(s)	504, 2016, 2086
BseGI	GGATG	3 cut(s)	958, 1254, 1950
BseLI	CCNNNNNNNGG	1 cut(s)	967
BseMI	GCAATG	2 cut(s)	323, 1124
BseMII	CTCAG	4 cut(s)	159, 309, 429, 806
BseNI	ACTGG	3 cut(s)	156, 891, 1420
BseRI	GAGGAG	5 cut(s)	111, 185, 524, 624, 821
BseXI	GCAGC	6 cut(s)	844, 856, 1513, 1516, 1531, 1819
BsgI	GTGCAG	3 cut(s)	672, 1299, 1515
Bsh1236I	CGCG	1 cut(s)	2002
BshFI	GGCC	4 cut(s)	885, 1300, 1419, 1958
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	2 cut(s)	1942, 2018
BslFI	GGGAC	3 cut(s)	592, 761, 1793
BslI	CCNNNNNNNGG	1 cut(s)	967
BsmAI	GTCTC	5 cut(s)	93, 478, 506, 1099, 1213
BsmFI	GGGAC	3 cut(s)	592, 761, 1793
BsnI	GGCC	4 cut(s)	885, 1300, 1419, 1958
BsoBI	CYCGRG	1 cut(s)	837
Bsp13I	TCCGGA	1 cut(s)	1941
BspACI	CCGC	2 cut(s)	89, 1075
BspANI	GGCC	4 cut(s)	885, 1300, 1419, 1958
BspCNI	CTCAG	4 cut(s)	160, 310, 430, 805
BspEI	TCCGGA	1 cut(s)	1941
BspFNI	CGCG	1 cut(s)	2002
BspLI	GGNNCC	3 cut(s)	57, 1781, 2138
BspPI	GGATC	6 cut(s)	249, 404, 676, 1142, 1397, 2051
BspQI	GCTCTTC	1 cut(s)	663
BspTI	CTTAAG	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	323, 1124
BsrI	ACTGG	3 cut(s)	156, 891, 1420
BssECI	CCNNGG	3 cut(s)	504, 2016, 2086
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	1226
Bst4CI	ACNGT	4 cut(s)	1111, 1453, 1767, 1891
Bst6I	CTCTTC	4 cut(s)	476, 488, 663, 1461
BstAFI	CTTAAG	1 cut(s)	640
BstBAI	YACGTR	2 cut(s)	650, 698
BstC8I	GCNNGC	5 cut(s)	855, 883, 1073, 1524, 2106
BstDEI	CTNAG	6 cut(s)	168, 318, 438, 558, 792, 1811
BstF5I	GGATG	3 cut(s)	958, 1254, 1950
BstFNI	CGCG	1 cut(s)	2002
BstMAI	GTCTC	5 cut(s)	93, 478, 506, 1099, 1213
BstMWI	GCNNNNNNNGC	6 cut(s)	670, 866, 878, 935, 1559, 2114
BstNI	CCWGG	1 cut(s)	1226
BstNSI	RCATGY	3 cut(s)	259, 857, 1358
BstSCI	CCNGG	2 cut(s)	1224, 2016
BstUI	CGCG	1 cut(s)	2002
BstV1I	GCAGC	6 cut(s)	844, 856, 1513, 1516, 1531, 1819
BstV2I	GAAGAC	4 cut(s)	695, 1368, 1892, 2024
BstX2I	RGATCY	4 cut(s)	241, 409, 681, 1894
BstXI	CCANNNNNNTGG	1 cut(s)	898
BstYI	RGATCY	4 cut(s)	241, 409, 681, 1894
Bsu36I	CCTNAGG	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	1980
BsuRI	GGCC	4 cut(s)	885, 1300, 1419, 1958
BtgZI	GCGATG	1 cut(s)	1172
BtrI	CACGTC	1 cut(s)	751
BtsCI	GGATG	3 cut(s)	958, 1254, 1950
BtsIMutI	CAGTG	2 cut(s)	903, 1427
Cac8I	GCNNGC	5 cut(s)	855, 883, 1073, 1524, 2106
Cfr13I	GGNCC	4 cut(s)	833, 1417, 1780, 2137
Csp6I	GTAC	2 cut(s)	1352, 1825
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviQI	GTAC	2 cut(s)	1352, 1825
DdeI	CTNAG	6 cut(s)	168, 318, 438, 558, 792, 1811
DrdI	GACNNNNNNGTC	1 cut(s)	755
DseDI	GACNNNNNNGTC	1 cut(s)	755
Eam1104I	CTCTTC	4 cut(s)	476, 488, 663, 1461
EarI	CTCTTC	4 cut(s)	476, 488, 663, 1461
Eco130I	CCWWGG	1 cut(s)	504
Eco147I	AGGCCT	1 cut(s)	1300
Eco47I	GGWCC	3 cut(s)	833, 1780, 2137
Eco57I	CTGAAG	2 cut(s)	471, 1904
Eco72I	CACGTG	1 cut(s)	650
Eco81I	CCTNAGG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	2137
EcoRII	CCWGG	1 cut(s)	1224
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	3 cut(s)	1019, 1606, 1938
ErhI	CCWWGG	1 cut(s)	504
FalI	AAGNNNNNCTT	2 cut(s)	1482, 1514
FaqI	GGGAC	3 cut(s)	592, 761, 1793
FauNDI	CATATG	1 cut(s)	1271
FblI	GTMKAC	1 cut(s)	688
Fnu4HI	GCNGC	6 cut(s)	858, 870, 1520, 1527, 1530, 1808
FokI	GGATG	3 cut(s)	965, 1261, 1957
Fsp4HI	GCNGC	6 cut(s)	858, 870, 1520, 1527, 1530, 1808
FspBI	CTAG	6 cut(s)	12, 162, 185, 1554, 1829, 1898
GluI	GCNGC	6 cut(s)	858, 870, 1520, 1527, 1530, 1808
HaeIII	GGCC	4 cut(s)	885, 1300, 1419, 1958
HapII	CCGG	2 cut(s)	1942, 2018
HincII	GTYRAC	3 cut(s)	526, 689, 1080
HindII	GTYRAC	3 cut(s)	526, 689, 1080
HindIII	AAGCTT	2 cut(s)	1613, 2102
HinfI	GANTC	8 cut(s)	287, 446, 569, 722, 734, 903, 1380, 1799
HpaI	GTTAAC	1 cut(s)	1080
HpaII	CCGG	2 cut(s)	1942, 2018
HphI	GGTGA	6 cut(s)	248, 416, 548, 815, 1855, 2102
Hpy166II	GTNNAC	4 cut(s)	526, 689, 1080, 1758
Hpy188I	TCNGA	8 cut(s)	52, 343, 451, 543, 681, 721, 795, 1059
Hpy188III	TCNNGA	9 cut(s)	59, 146, 317, 1105, 1282, 1400, 1499, 1942, 1973
Hpy8I	GTNNAC	4 cut(s)	526, 689, 1080, 1758
Hpy99I	CGWCG	1 cut(s)	690
HpyCH4III	ACNGT	4 cut(s)	1111, 1453, 1767, 1891
HpyCH4IV	ACGT	3 cut(s)	649, 697, 750
HpyF10VI	GCNNNNNNNGC	6 cut(s)	670, 866, 878, 935, 1559, 2114
HpyF3I	CTNAG	6 cut(s)	168, 318, 438, 558, 792, 1811
HpySE526I	ACGT	3 cut(s)	649, 697, 750
Kpn2I	TCCGGA	1 cut(s)	1941
KspAI	GTTAAC	1 cut(s)	1080
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	3 cut(s)	637, 1389, 2020
Lsp1109I	GCAGC	6 cut(s)	844, 856, 1513, 1516, 1531, 1819
LweI	GCATC	2 cut(s)	1540, 1591
MaeI	CTAG	6 cut(s)	12, 162, 185, 1554, 1829, 1898
MaeII	ACGT	3 cut(s)	649, 697, 750
MaeIII	GTNAC	4 cut(s)	384, 424, 1274, 2011
MfeI	CAATTG	1 cut(s)	1384
MflI	RGATCY	4 cut(s)	241, 409, 681, 1894
MluI	ACGCGT	1 cut(s)	2000
MlyI	GAGTC	3 cut(s)	578, 1374, 1793
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	3 cut(s)	1019, 1606, 1938
MroI	TCCGGA	1 cut(s)	1941
MroXI	GAANNNNTTC	4 cut(s)	456, 600, 1994, 2031
MseI	TTAA	7 cut(s)	252, 641, 1079, 1202, 1370, 1698, 2100
MspA1I	CMGCKG	1 cut(s)	1795
MspCI	CTTAAG	1 cut(s)	640
MspI	CCGG	2 cut(s)	1942, 2018
MspR9I	CCNGG	2 cut(s)	1226, 2018
MunI	CAATTG	1 cut(s)	1384
MvaI	CCWGG	1 cut(s)	1226
MvnI	CGCG	1 cut(s)	2002
MwoI	GCNNNNNNNGC	6 cut(s)	670, 866, 878, 935, 1559, 2114
NciI	CCSGG	1 cut(s)	2018
NdeI	CATATG	1 cut(s)	1271
NlaIV	GGNNCC	3 cut(s)	57, 1781, 2138
NmuCI	GTSAC	2 cut(s)	424, 1274
NsiI	ATGCAT	3 cut(s)	1019, 1606, 1938
NspI	RCATGY	3 cut(s)	259, 857, 1358
PaeI	GCATGC	1 cut(s)	857
PaeR7I	CTCGAG	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	1300
PciI	ACATGT	2 cut(s)	255, 1354
PciSI	GCTCTTC	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PdmI	GAANNNNTTC	4 cut(s)	456, 600, 1994, 2031
PfeI	GAWTC	5 cut(s)	287, 446, 722, 734, 903
PkrI	GCNGC	6 cut(s)	859, 871, 1521, 1528, 1531, 1809
PleI	GAGTC	3 cut(s)	577, 1374, 1793
PmaCI	CACGTG	1 cut(s)	650
PmlI	CACGTG	1 cut(s)	650
PpsI	GAGTC	3 cut(s)	577, 1374, 1793
Ppu21I	YACGTR	2 cut(s)	650, 698
PpuMI	RGGWCCY	1 cut(s)	2137
PscI	ACATGT	2 cut(s)	255, 1354
Psp5II	RGGWCCY	1 cut(s)	2137
Psp6I	CCWGG	1 cut(s)	1224
PspCI	CACGTG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	1224
PspN4I	GGNNCC	3 cut(s)	57, 1781, 2138
PspPI	GGNCC	4 cut(s)	833, 1417, 1780, 2137
PspPPI	RGGWCCY	1 cut(s)	2137
PspXI	VCTCGAGB	1 cut(s)	837
PsuI	RGATCY	4 cut(s)	241, 409, 681, 1894
PvuII	CAGCTG	1 cut(s)	1795
RsaI	GTAC	2 cut(s)	1353, 1826
RsaNI	GTAC	2 cut(s)	1352, 1825
SalI	GTCGAC	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	7 cut(s)	252, 641, 1079, 1202, 1370, 1698, 2100
SatI	GCNGC	6 cut(s)	858, 870, 1520, 1527, 1530, 1808
Sau96I	GGNCC	4 cut(s)	833, 1417, 1780, 2137
SchI	GAGTC	3 cut(s)	578, 1374, 1793
ScrFI	CCNGG	2 cut(s)	1226, 2018
SfaNI	GCATC	2 cut(s)	1540, 1591
Sfr274I	CTCGAG	1 cut(s)	837
SinI	GGWCC	3 cut(s)	833, 1780, 2137
SlaI	CTCGAG	1 cut(s)	837
SmlI	CTYRAG	3 cut(s)	640, 837, 982
SmoI	CTYRAG	3 cut(s)	640, 837, 982
SpeI	ACTAGT	1 cut(s)	11
SphI	GCATGC	1 cut(s)	857
SseBI	AGGCCT	1 cut(s)	1300
SsiI	CCGC	2 cut(s)	89, 1075
SspI	AATATT	1 cut(s)	976
SspMI	CTAG	6 cut(s)	12, 162, 185, 1554, 1829, 1898
StuI	AGGCCT	1 cut(s)	1300
StyD4I	CCNGG	2 cut(s)	1224, 2016
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	4 cut(s)	1111, 1453, 1767, 1891
TaiI	ACGT	3 cut(s)	652, 700, 753
TaqI	TCGA	6 cut(s)	688, 838, 906, 1464, 2035, 2046
TfiI	GAWTC	5 cut(s)	287, 446, 722, 734, 903
Tru1I	TTAA	7 cut(s)	252, 641, 1079, 1202, 1370, 1698, 2100
Tru9I	TTAA	7 cut(s)	252, 641, 1079, 1202, 1370, 1698, 2100
TscAI	CASTG	2 cut(s)	903, 1427
TseFI	GTSAC	2 cut(s)	424, 1274
TseI	GCWGC	6 cut(s)	857, 869, 1519, 1526, 1529, 1807
Tsp45I	GTSAC	2 cut(s)	424, 1274
TspGWI	ACGGA	4 cut(s)	382, 596, 674, 760
TspRI	CASTG	2 cut(s)	903, 1427
Vha464I	CTTAAG	1 cut(s)	640
VpaK11BI	GGWCC	3 cut(s)	833, 1780, 2137
XapI	RAATTY	4 cut(s)	270, 1165, 1835, 2048
XceI	RCATGY	3 cut(s)	259, 857, 1358
XhoI	CTCGAG	1 cut(s)	837
XmiI	GTMKAC	1 cut(s)	688
XmnI	GAANNNNTTC	4 cut(s)	456, 600, 1994, 2031
XspI	CTAG	6 cut(s)	12, 162, 185, 1554, 1829, 1898
Zsp2I	ATGCAT	3 cut(s)	1019, 1606, 1938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.