Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Forward (+)

7721228 .. 7721650

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0056700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGTACCGCACTTCAACCAGATTTTGTGATCTTCCAGATGAAGTTCTGGAACACATTCTTTCCTTCCTTACCATCAAAGACCTCGCTCGAGTGGGTTGTGTTTCGAAAAGATACAGCAAACTTCATCCATCAACTCTGTCATTAAGTTCAGACGAATCCTCTGATGCAAGTATTTCCACATGTGACCGGCGGAAAGAACTGTTGGGTTCCTTGGAGAGGTTCTTGATTCGACGTGGGTGTAATAAGTTACAATGCTTTCGATTTTCTTGGTGCTCTCATGATCACGATCAAGGCAAACCAGAATGTTGCTGCCCCAAGGACCTGAATTCGTGGGTGATCAAGTATATCAACAATGTAGTAAGGTGCAATGTTGAAGAGCTTCATCTTAAGATAAACATACATTCACGGGAACAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

140

Amino Acids

16.33

Weight (kDa)

8.55

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	9 - 41	9.3e-10	F-box-like
F-box	PF00646	9 - 39	1.1e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 193
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	18, 377
AjiI	CACGTC	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	328
Asp700I	GAANNNNTTC	2 cut(s)	57, 381
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	349
AsuII	TTCGAA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	2 cut(s)	83, 139
BclI	TGATCA	2 cut(s)	283, 339
BfaI	CTAG	1 cut(s)	421
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	213, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	213, 318
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	31, 283, 289, 339
BspACI	CCGC	2 cut(s)	10, 193
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	213, 318
BssMI	GATC	4 cut(s)	31, 283, 289, 339
BssT1I	CCWWGG	2 cut(s)	213, 318
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	4 cut(s)	34, 286, 292, 342
BstMBI	GATC	4 cut(s)	31, 283, 289, 339
BstNSI	RCATGY	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	299
BtrI	CACGTC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	127
CciI	TCATGA	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	183, 281
CviJI	RGCY	1 cut(s)	382
CviKI_1	RGCY	1 cut(s)	382
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	4 cut(s)	33, 285, 291, 341
DpnII	GATC	4 cut(s)	31, 283, 289, 339
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	213, 318
Eco47I	GGWCC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	213, 318
ErhI	CCWWGG	2 cut(s)	213, 318
FaeI	CATG	2 cut(s)	186, 284
FaiI	YATR	4 cut(s)	184, 282, 348, 401
FatI	CATG	2 cut(s)	182, 280
FbaI	TGATCA	2 cut(s)	283, 339
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	421
GluI	GCNGC	1 cut(s)	313
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	2 cut(s)	186, 284
HinfI	GANTC	2 cut(s)	158, 229
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	154, 166
Hpy188III	TCNNGA	5 cut(s)	38, 50, 226, 281, 287
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	170, 369
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	186, 284
Ksp22I	TGATCA	2 cut(s)	283, 339
Kzo9I	GATC	4 cut(s)	31, 283, 289, 339
LguI	GCTCTTC	1 cut(s)	372
LpnPI	CCDG	6 cut(s)	34, 35, 51, 203, 315, 338
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	421
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	185, 249
MalI	GATC	4 cut(s)	33, 285, 291, 341
MboI	GATC	4 cut(s)	31, 283, 289, 339
MboII	GAAGA	2 cut(s)	26, 389
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	328, 416
MnlI	CCTC	3 cut(s)	95, 172, 213
MroXI	GAANNNNTTC	2 cut(s)	57, 381
MseI	TTAA	2 cut(s)	146, 390
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	31, 283, 289, 339
NlaIII	CATG	2 cut(s)	186, 284
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	280
PciI	ACATGT	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	2 cut(s)	57, 381
PfeI	GAWTC	2 cut(s)	158, 229
PkrI	GCNGC	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	322
PscI	ACATGT	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PspXI	VCTCGAGB	1 cut(s)	90
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	146, 390
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	4 cut(s)	31, 283, 289, 339
Sau96I	GGNCC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	6 cut(s)	87, 224, 238, 327, 368, 384
SfaNI	GCATC	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	107
SinI	GGWCC	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	90, 389
SmoI	CTYRAG	2 cut(s)	90, 389
Sse9I	AATT	2 cut(s)	328, 416
SsiI	CCGC	2 cut(s)	10, 193
SspMI	CTAG	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	213, 318
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	4 cut(s)	91, 107, 232, 262
TasI	AATT	2 cut(s)	328, 416
TfiI	GAWTC	2 cut(s)	158, 229
Tru1I	TTAA	2 cut(s)	146, 390
Tru9I	TTAA	2 cut(s)	146, 390
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	17, 57, 116, 374
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	186
XhoI	CTCGAG	1 cut(s)	90
XmnI	GAANNNNTTC	2 cut(s)	57, 381
XspI	CTAG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.