Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Forward (+)

5239111 .. 5243003

Gene Structure 3893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

ATGCTCACCTCCCTCACTCCATTCAACCTAACCTTCTTCCTCTCCTCCCCAAAATCTTCATACCTCTTCCCCAAACCCACCGCCACCGCCGCCGTCACTAACTTCTCCCTCTCCCATTCCCTCCAATCCGAAACCCTCGAAATCCTCGAATGGCCCTCCGTCTGCAACCACCTCTCCGCTCTCGCCTCCACCTCCATGGGCTTCTCCGCCGCGCAGAAGGCCCAAATTCCCTTCGGAAAATCCAAGTCCGAGAGCCAGAAGCTTCTAGATCAAACCGCCGCCGCGGTCTCCGCCATCGCAGCGATCGGTTCTCCGCCGCCCGATCTCCTCTCCATCGAGGACGTCTCCGAGATCGTAAACGACGCCGTTTTGGGCAAATTGCTCACTATCAACGAGCTCTGCGCTGTGCGTAGAACACTCATAGCCGCAAAGGCCTTGTTCGAGAAGCTGAAGGCCTTAGCAGATTCTCATAGGTACTTGCCATTGCTTGAAGTACTTGAGGGTTGTGATTTTCTAGTGAAGCTGGAGAGAACTATAGGGTTGTGCATAGACTGCAATCTTTCGGAGATTCTCGACACGGCTAGTGAAGACTTGGAGATCATTAGGTTCGAAAAGAAGAGGAACATGGAGAAATTGGATGCTTTGTTGAAGGAAATGTCGTCTAAGATATTTAAGGCCGGGGGGATTGACAGTCCTTTGGTGACGAAGCGCAGGGCGAGGATGTGTGTGGGTGTTAGAGCTAGGTACAAGTATTTGGTTCCAGATGGGGTGGTGTTGGATGCTAGTAGTTCTGGTGCGACGTACTTCATGGAGCCGAGTGAGGCGGTGGAGTTGAATAACATGGAAGTGAGGCTTTCGAATGCTGAGAAGGCTGAGGAAATAGGCATTTTGAGCTTCCTTACATCAGAAATTGCAAAATCAGAAGGGGAGATAGTGTATTTGTTAGATAAGATTGTAGAAGTTGATCTTGCTTTTGCTAGAGCTGTGTATGCTCGGTGGATGAATGGGGTATGCCCAATTTTCAGTTCTAAGGATGGCAAGGATTTAGAGAATGGTGGAGCTGAAATTGGGATATCGATAGATATTGAAGGAATACAACATCCTTTGCTCCTTGAGTCATCTCTTAGTAGTTTGTCTGATGCCCTTGCATCCAGTTCTAGAAGCGCACTTTCCTCCAAAGACGGAAATGATGTAAAAATGGTCTATCGAAGTTTATCTAGTGGTGTATCTGATTTTCCAGTGCCAATAGATATCAAAATTGGATATGGAACCAGAGTGGTTGTAATCTCAGGGCCTAATACTGGCGGGAAAACAGCTTCCATGAAAACTTTGGGCCTGGCATCTCTTATGTCGAAAGCTGGAATGTATCTGCCTGCTAGAAGCCAGCCAAAGCTTCCATGGTTTGATCTTGTTCTAGCTGATATTGGAGATCAACAGTCTCTTGAGCAAAGCCTCTCAACATTTAGTGGGCACATATCACGGATCTGTAATATTTTGGAAGTCACCTCAAAAGAATCACTTGTCCTCATTGATGAAATTGGTAGTGGAACCGATCCTTCAGAAGGTGTGGCTCTTTCTACCAGCATTTTGCAATATCTCAAAGATCGCGTTAACTTAGCTGTTGTGACTACTCATTACGCGGATTTAAGTCTTCTAAAAGAAAAGGATCACCAGTTTGAAAATGCAGCCATGGAGTTTTCTCCAGAAACCTTACAACCAACTTATCGGGTCCTATGGGGAAGTATTGGTGACTCAAATGCATTGAGTATTGCTAAATCAATTGGTTTTAATCAACAAATAATTGAACGCGCACAAGATTGGGTGGAAAGATTAAGGCCAGAAAAGCAGCAAGAGCGTAAAGGTTTGCTACATCGGTCATTAATAGAGGAAAGAAACAGACTGGAAGCTCAGGCTAAGATGGCAGCGTCTCTTCATTCAGAAACCAGGGATATTTATCATGAGATCCAAGATGAGGCAGAAGATCTTGACGTGCGCAAGAGAGCTCTTATGGCAAAGGAAACCCTACAGGTTCGGGAAGAAGTGAAGATTGTCAAATCTCAATTGGAAGCTGTGCTTCAGGAGTTTGATAACCGACTCAAAACTGCTGGTGCTGATCAGTTGAATTTGCTGATAAAGAAATCAGAAGCTGTAATTGCATCTATTATTGAGGCTCACAGTCCTGAAGATGGTTTCTTGGTAAATGAGACATCTGAAACTTCATACACACCTCGATTTGGGGAACAAGTCTATTTGAAGGGACTCAGAGATAAGATAGCTACCGTAGTTGAAGCACCTGGAGATGATGGGACAGTGCTCGTACAATATGGTAAAATTAAGGTTAGGTTGAAGAATAATGAGATCAGAGCTATTCCTAGTAGTGATAAGAATGCCGTGACTAGTTCTGTCCCACGTTTGAAGCAGCGGGTTTGGCGGAGCCGTACTGTGGAAAACAAAGATGCGGAGGTTTCTTATAGTCCAGCGGTACAAACATCAAAGAACACAGTGGATCTTCGTGGCATGAGGGCGGAGGAAGCTTCTTACAATCTGGACATGGCCATCGCTACTAGAGAGTCTCAGTCAGTTCTTTTTGTTGTACATGGGATGGGCACAGGGGTTGTCAAAGAGCGAGCACTTGAGCTTTTAAAGAAACATCCACGAGTAGCCAAGTATGAAGCGGAAAGTCCAATGAATTATGGTTGTACAGTTGCTTACATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

906

Amino Acids

99.53

Weight (kDa)

5.62

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_V	PF00488	427 - 611	7.4e-34	MutS domain V
MSSS	PF20297	746 - 787	1.7e-07	MutS2 and Smr-associated SH3 domain
Smr	PF01713	835 - 904	2.8e-10	Smr domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	345
Acc16I	TGCGCA	1 cut(s)	1994
AccBSI	CCGCTC	1 cut(s)	179
AccII	CGCG	5 cut(s)	212, 284, 1608, 1640, 1809
AclWI	GGATC	5 cut(s)	1490, 1547, 1674, 1957, 2514
AcoI	YGGCCR	1 cut(s)	2553
AcsI	RAATTY	2 cut(s)	225, 2122
AcuI	CTGAAG	4 cut(s)	470, 1542, 2060, 2202
AcyI	GRCGYC	2 cut(s)	342, 363
AfaI	GTAC	9 cut(s)	476, 495, 746, 803, 2319, 2440, 2484, 2595, 2701
AfiI	CCNNNNNNNGG	6 cut(s)	1301, 1562, 1972, 2186, 2234, 2443
AhlI	ACTAGT	1 cut(s)	2396
AjiI	CACGTC	1 cut(s)	1990
AjnI	CCWGG	3 cut(s)	1335, 1943, 2293
AjuI	GAANNNNNNNTTGG	2 cut(s)	1009, 1041
Alw21I	GWGCWC	4 cut(s)	399, 2005, 2316, 2632
Alw26I	GTCTC	6 cut(s)	292, 349, 1443, 1932, 2198, 2577
AlwI	GGATC	5 cut(s)	1490, 1547, 1674, 1957, 2514
AlwNI	CAGNNNCTG	1 cut(s)	2147
AoxI	GGCC	9 cut(s)	152, 219, 432, 453, 675, 1292, 1333, 1835, 2553
ApeKI	GCWGC	5 cut(s)	299, 1685, 1846, 1922, 2419
ApoI	RAATTY	2 cut(s)	225, 2122
AseI	ATTAAT	1 cut(s)	1880
AspLEI	GCGC	6 cut(s)	214, 404, 711, 1166, 1811, 1995
AspS9I	GGNCC	5 cut(s)	153, 220, 1292, 1333, 1729
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	4 cut(s)	712, 1495, 1661, 1760
AsuII	TTCGAA	2 cut(s)	609, 857
AvaII	GGWCC	1 cut(s)	1729
BaeGI	GKGCMC	2 cut(s)	1473, 2609
BalI	TGGCCA	1 cut(s)	2555
BanII	GRGCYC	2 cut(s)	399, 2005
BauI	CACGAG	1 cut(s)	2655
BbsI	GAAGAC	2 cut(s)	594, 1643
Bbv12I	GWGCWC	4 cut(s)	399, 2005, 2316, 2632
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	5 cut(s)	311, 1697, 1858, 1934, 2431
BccI	CCATC	9 cut(s)	302, 341, 758, 1028, 1912, 2180, 2297, 2564, 2596
BceAI	ACGGC	5 cut(s)	77, 350, 594, 2375, 2421
BciT130I	CCWGG	3 cut(s)	1337, 1945, 2295
BclI	TGATCA	1 cut(s)	2113
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	6 cut(s)	292, 349, 1443, 1932, 2198, 2577
BcuI	ACTAGT	1 cut(s)	2396
BfmI	CTRYAG	2 cut(s)	534, 2024
BglI	GCCNNNNNGGC	1 cut(s)	431
BglII	AGATCT	1 cut(s)	1981
BmcAI	AGTACT	1 cut(s)	495
Bme1390I	CCNGG	4 cut(s)	679, 1337, 1945, 2295
Bme18I	GGWCC	1 cut(s)	1729
BmgBI	CACGTC	1 cut(s)	1990
BmgT120I	GGNCC	5 cut(s)	153, 220, 1292, 1333, 1729
BmiI	GGNNCC	6 cut(s)	759, 813, 1270, 1549, 1730, 2435
BmrFI	CCNGG	4 cut(s)	679, 1337, 1945, 2295
BmsI	GCATC	7 cut(s)	628, 769, 1129, 1157, 1349, 2165, 2446
BpiI	GAAGAC	2 cut(s)	594, 1643
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	3 cut(s)	545, 1686, 2316
Bpu10I	CCTNAGC	3 cut(s)	457, 873, 1908
Bpu14I	TTCGAA	2 cut(s)	609, 857
BpuEI	CTTGAG	4 cut(s)	518, 1133, 1463, 2654
BpuMI	CCSGG	1 cut(s)	679
Bsa29I	ATCGAT	1 cut(s)	1076
BsaBI	GATNNNNATC	1 cut(s)	1953
BsaHI	GRCGYC	2 cut(s)	342, 363
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	6 cut(s)	195, 282, 678, 1397, 1689, 1944
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 920, 950
Bsc4I	CCNNNNNNNGG	6 cut(s)	1301, 1562, 1972, 2186, 2234, 2443
Bse1I	ACTGG	5 cut(s)	1152, 1238, 1306, 1672, 1905
Bse3DI	GCAATG	1 cut(s)	482
Bse8I	GATNNNNATC	1 cut(s)	1953
BseBI	CCWGG	3 cut(s)	1337, 1945, 2295
BseCI	ATCGAT	1 cut(s)	1076
BseDI	CCNNGG	6 cut(s)	195, 282, 678, 1397, 1689, 1944
BseGI	GGATG	9 cut(s)	643, 726, 784, 1005, 1039, 1099, 1148, 2607, 2650
BseJI	GATNNNNATC	1 cut(s)	1953
BseLI	CCNNNNNNNGG	6 cut(s)	1301, 1562, 1972, 2186, 2234, 2443
BseMI	GCAATG	1 cut(s)	482
BseMII	CTCAG	6 cut(s)	855, 864, 1302, 1922, 2275, 2588
BseNI	ACTGG	5 cut(s)	1152, 1238, 1306, 1672, 1905
BseRI	GAGGAG	2 cut(s)	34, 317
BseSI	GKGCMC	2 cut(s)	1473, 2609
BseXI	GCAGC	5 cut(s)	311, 1697, 1858, 1934, 2431
Bsh1236I	CGCG	5 cut(s)	212, 284, 1608, 1640, 1809
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	9 cut(s)	154, 221, 434, 455, 677, 1294, 1335, 1837, 2555
BshVI	ATCGAT	1 cut(s)	1076
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	4 cut(s)	399, 2005, 2316, 2632
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	3 cut(s)	2271, 2320, 2390
BslI	CCNNNNNNNGG	6 cut(s)	1301, 1562, 1972, 2186, 2234, 2443
BsmAI	GTCTC	6 cut(s)	292, 349, 1443, 1932, 2198, 2577
BsmBI	CGTCTC	2 cut(s)	349, 1932
BsmFI	GGGAC	3 cut(s)	2271, 2320, 2390
BsmI	GAATGC	2 cut(s)	865, 2392
BsnI	GGCC	9 cut(s)	154, 221, 434, 455, 677, 1294, 1335, 1837, 2555
Bso31I	GGTCTC	1 cut(s)	292
Bsp119I	TTCGAA	2 cut(s)	609, 857
Bsp1286I	GDGCHC	6 cut(s)	399, 1473, 2005, 2316, 2609, 2632
Bsp1407I	TGTACA	2 cut(s)	2593, 2699
Bsp19I	CCATGG	3 cut(s)	195, 1397, 1689
BspANI	GGCC	9 cut(s)	154, 221, 434, 455, 677, 1294, 1335, 1837, 2555
BspCNI	CTCAG	6 cut(s)	856, 865, 1301, 1921, 2274, 2587
BspDI	ATCGAT	1 cut(s)	1076
BspFNI	CGCG	5 cut(s)	212, 284, 1608, 1640, 1809
BspHI	TCATGA	1 cut(s)	1957
BspLI	GGNNCC	6 cut(s)	759, 813, 1270, 1549, 1730, 2435
BspPI	GGATC	5 cut(s)	1490, 1547, 1674, 1957, 2514
BspT104I	TTCGAA	2 cut(s)	609, 857
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	482
BsrGI	TGTACA	2 cut(s)	2593, 2699
BsrI	ACTGG	5 cut(s)	1152, 1238, 1306, 1672, 1905
BssECI	CCNNGG	6 cut(s)	195, 282, 678, 1397, 1689, 1944
BssNI	GRCGYC	2 cut(s)	342, 363
BssSI	CACGAG	1 cut(s)	2655
BssT1I	CCWWGG	3 cut(s)	195, 1397, 1689
Bst2BI	CACGAG	1 cut(s)	2655
Bst2UI	CCWGG	3 cut(s)	1337, 1945, 2295
Bst4CI	ACNGT	8 cut(s)	692, 1437, 2177, 2281, 2311, 2443, 2503, 2704
Bst6I	CTCTTC	3 cut(s)	71, 611, 1935
BstACI	GRCGYC	2 cut(s)	342, 363
BstAPI	GCANNNNNTGC	1 cut(s)	552
BstAUI	TGTACA	2 cut(s)	2593, 2699
BstBI	TTCGAA	2 cut(s)	609, 857
BstC8I	GCNNGC	3 cut(s)	1374, 1385, 2628
BstDSI	CCRYGG	4 cut(s)	195, 282, 1397, 1689
BstENI	CCTNNNNNAGG	1 cut(s)	1560
BstF5I	GGATG	9 cut(s)	643, 726, 784, 1005, 1039, 1099, 1148, 2607, 2650
BstFNI	CGCG	5 cut(s)	212, 284, 1608, 1640, 1809
BstHHI	GCGC	6 cut(s)	214, 404, 711, 1166, 1811, 1995
BstMAI	GTCTC	6 cut(s)	292, 349, 1443, 1932, 2198, 2577
BstMCI	CGRYCG	1 cut(s)	306
BstNI	CCWGG	3 cut(s)	1337, 1945, 2295
BstSCI	CCNGG	4 cut(s)	677, 1335, 1943, 2293
BstSFI	CTRYAG	2 cut(s)	534, 2024
BstSLI	GKGCMC	2 cut(s)	1473, 2609
BstUI	CGCG	5 cut(s)	212, 284, 1608, 1640, 1809
BstV1I	GCAGC	5 cut(s)	311, 1697, 1858, 1934, 2431
BstV2I	GAAGAC	2 cut(s)	594, 1643
BstX2I	RGATCY	4 cut(s)	1482, 1962, 1981, 2506
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	4 cut(s)	1482, 1962, 1981, 2506
Bsu15I	ATCGAT	1 cut(s)	1076
BsuRI	GGCC	9 cut(s)	154, 221, 434, 455, 677, 1294, 1335, 1837, 2555
BsuTUI	ATCGAT	1 cut(s)	1076
BtgI	CCRYGG	4 cut(s)	195, 282, 1397, 1689
BtgZI	GCGATG	2 cut(s)	280, 2542
BtrI	CACGTC	1 cut(s)	1990
BtsCI	GGATG	9 cut(s)	643, 726, 784, 1005, 1039, 1099, 1148, 2607, 2650
BtsIMutI	CAGTG	3 cut(s)	1245, 2316, 2508
Cac8I	GCNNGC	3 cut(s)	1374, 1385, 2628
CaiI	CAGNNNCTG	1 cut(s)	2147
CciI	TCATGA	1 cut(s)	1957
CfoI	GCGC	6 cut(s)	214, 404, 711, 1166, 1811, 1995
Cfr13I	GGNCC	5 cut(s)	153, 220, 1292, 1333, 1729
Cfr42I	CCGCGG	1 cut(s)	285
ClaI	ATCGAT	1 cut(s)	1076
CseI	GACGC	2 cut(s)	371, 1914
Csp6I	GTAC	9 cut(s)	475, 494, 745, 802, 2318, 2439, 2483, 2594, 2700
CviQI	GTAC	9 cut(s)	475, 494, 745, 802, 2318, 2439, 2483, 2594, 2700
DraI	TTTAAA	1 cut(s)	2643
EaeI	YGGCCR	1 cut(s)	2553
Eam1104I	CTCTTC	3 cut(s)	71, 611, 1935
EarI	CTCTTC	3 cut(s)	71, 611, 1935
EciI	GGCGGA	5 cut(s)	196, 280, 303, 2446, 2540
Ecl136II	GAGCTC	2 cut(s)	397, 2003
Eco130I	CCWWGG	3 cut(s)	195, 1397, 1689
Eco147I	AGGCCT	2 cut(s)	434, 455
Eco24I	GRGCYC	2 cut(s)	399, 2005
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	2 cut(s)	1074, 1252
Eco47I	GGWCC	1 cut(s)	1729
Eco53kI	GAGCTC	2 cut(s)	397, 2003
Eco57I	CTGAAG	4 cut(s)	470, 1542, 2060, 2202
EcoICRI	GAGCTC	2 cut(s)	397, 2003
EcoNI	CCTNNNNNAGG	1 cut(s)	1560
EcoO109I	RGGNCCY	2 cut(s)	1292, 1729
EcoRII	CCWGG	3 cut(s)	1335, 1943, 2293
EcoRV	GATATC	2 cut(s)	1074, 1252
EcoT14I	CCWWGG	3 cut(s)	195, 1397, 1689
EcoT22I	ATGCAT	1 cut(s)	1762
EcoT38I	GRGCYC	2 cut(s)	399, 2005
ErhI	CCWWGG	3 cut(s)	195, 1397, 1689
Esp3I	CGTCTC	2 cut(s)	349, 1932
FalI	AAGNNNNNCTT	8 cut(s)	837, 869, 951, 983, 1503, 1535, 2058, 2090
FaqI	GGGAC	3 cut(s)	2271, 2320, 2390
FauI	CCCGC	2 cut(s)	1298, 2415
FbaI	TGATCA	1 cut(s)	2113
FokI	GGATG	9 cut(s)	650, 733, 791, 1012, 1046, 1086, 1135, 2614, 2637
FriOI	GRGCYC	2 cut(s)	399, 2005
FspI	TGCGCA	1 cut(s)	1994
GlaI	GCGC	6 cut(s)	213, 403, 710, 1165, 1810, 1994
GsuI	CTGGAG	3 cut(s)	545, 1686, 2316
HaeIII	GGCC	9 cut(s)	154, 221, 434, 455, 677, 1294, 1335, 1837, 2555
HapII	CCGG	1 cut(s)	678
HgaI	GACGC	2 cut(s)	371, 1914
HhaI	GCGC	6 cut(s)	214, 404, 711, 1166, 1811, 1995
Hin1I	GRCGYC	2 cut(s)	342, 363
Hin6I	GCGC	6 cut(s)	212, 402, 709, 1164, 1809, 1993
HinP1I	GCGC	6 cut(s)	212, 402, 709, 1164, 1809, 1993
HincII	GTYRAC	1 cut(s)	1612
HindII	GTYRAC	1 cut(s)	1612
HindIII	AAGCTT	3 cut(s)	260, 1391, 2532
HinfI	GANTC	8 cut(s)	464, 568, 1115, 1514, 1751, 2094, 2259, 2570
HpaI	GTTAAC	1 cut(s)	1612
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	4 cut(s)	712, 1495, 1661, 1760
Hpy166II	GTNNAC	2 cut(s)	358, 1612
Hpy8I	GTNNAC	2 cut(s)	358, 1612
Hpy99I	CGWCG	2 cut(s)	365, 802
HpyCH4III	ACNGT	8 cut(s)	692, 1437, 2177, 2281, 2311, 2443, 2503, 2704
HpyCH4IV	ACGT	4 cut(s)	342, 800, 1989, 2410
HpyCH4V	TGCA	9 cut(s)	165, 546, 555, 914, 1148, 1591, 1685, 1760, 2156
HpySE526I	ACGT	4 cut(s)	342, 800, 1989, 2410
Hsp92I	GRCGYC	2 cut(s)	342, 363
HspAI	GCGC	6 cut(s)	212, 402, 709, 1164, 1809, 1993
Ksp22I	TGATCA	1 cut(s)	2113
KspAI	GTTAAC	1 cut(s)	1612
KspI	CCGCGG	1 cut(s)	285
LmnI	GCTCC	4 cut(s)	811, 1058, 1113, 2433
Lsp1109I	GCAGC	5 cut(s)	311, 1697, 1858, 1934, 2431
LweI	GCATC	7 cut(s)	628, 769, 1129, 1157, 1349, 2165, 2446
MaeII	ACGT	4 cut(s)	342, 800, 1989, 2410
MaeIII	GTNAC	6 cut(s)	94, 700, 1501, 1624, 1748, 2392
MbiI	CCGCTC	1 cut(s)	179
MfeI	CAATTG	2 cut(s)	1779, 2060
MflI	RGATCY	4 cut(s)	1482, 1962, 1981, 2506
MhlI	GDGCHC	6 cut(s)	399, 1473, 2005, 2316, 2609, 2632
MlsI	TGGCCA	1 cut(s)	2555
MluNI	TGGCCA	1 cut(s)	2555
MlyI	GAGTC	5 cut(s)	1124, 1745, 2088, 2253, 2579
MmeI	TCCRAC	1 cut(s)	756
Mox20I	TGGCCA	1 cut(s)	2555
Mph1103I	ATGCAT	1 cut(s)	1762
MscI	TGGCCA	1 cut(s)	2555
MseI	TTAA	8 cut(s)	672, 1611, 1646, 1788, 1832, 1880, 2334, 2642
MslI	CAYNNNNRTG	2 cut(s)	194, 845
Msp20I	TGGCCA	1 cut(s)	2555
MspA1I	CMGCKG	3 cut(s)	284, 2422, 2480
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	4 cut(s)	679, 1337, 1945, 2295
MunI	CAATTG	2 cut(s)	1779, 2060
Mva1269I	GAATGC	2 cut(s)	865, 2392
MvaI	CCWGG	3 cut(s)	1337, 1945, 2295
MvnI	CGCG	5 cut(s)	212, 284, 1608, 1640, 1809
NciI	CCSGG	1 cut(s)	679
NcoI	CCATGG	3 cut(s)	195, 1397, 1689
NlaIV	GGNNCC	6 cut(s)	759, 813, 1270, 1549, 1730, 2435
NmeAIII	GCCGAG	1 cut(s)	840
NmuCI	GTSAC	6 cut(s)	94, 700, 1501, 1624, 1748, 2392
NsbI	TGCGCA	1 cut(s)	1994
NsiI	ATGCAT	1 cut(s)	1762
NspV	TTCGAA	2 cut(s)	609, 857
PagI	TCATGA	1 cut(s)	1957
PceI	AGGCCT	2 cut(s)	434, 455
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	2 cut(s)	865, 2392
PfeI	GAWTC	3 cut(s)	464, 568, 1514
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	5 cut(s)	1123, 1745, 2088, 2253, 2578
PpsI	GAGTC	5 cut(s)	1123, 1745, 2088, 2253, 2578
PpuMI	RGGWCCY	1 cut(s)	1729
PshBI	ATTAAT	1 cut(s)	1880
Psp124BI	GAGCTC	2 cut(s)	399, 2005
Psp5II	RGGWCCY	1 cut(s)	1729
Psp6I	CCWGG	3 cut(s)	1335, 1943, 2293
PspGI	CCWGG	3 cut(s)	1335, 1943, 2293
PspN4I	GGNNCC	6 cut(s)	759, 813, 1270, 1549, 1730, 2435
PspPI	GGNCC	5 cut(s)	153, 220, 1292, 1333, 1729
PspPPI	RGGWCCY	1 cut(s)	1729
PstNI	CAGNNNCTG	1 cut(s)	2147
PsuI	RGATCY	4 cut(s)	1482, 1962, 1981, 2506
PvuI	CGATCG	1 cut(s)	306
RsaI	GTAC	9 cut(s)	476, 495, 746, 803, 2319, 2440, 2484, 2595, 2701
RsaNI	GTAC	9 cut(s)	475, 494, 745, 802, 2318, 2439, 2483, 2594, 2700
RseI	CAYNNNNRTG	2 cut(s)	194, 845
SacI	GAGCTC	2 cut(s)	399, 2005
SacII	CCGCGG	1 cut(s)	285
SaqAI	TTAA	8 cut(s)	672, 1611, 1646, 1788, 1832, 1880, 2334, 2642
Sau96I	GGNCC	5 cut(s)	153, 220, 1292, 1333, 1729
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	5 cut(s)	1124, 1745, 2088, 2253, 2579
ScrFI	CCNGG	4 cut(s)	679, 1337, 1945, 2295
SduI	GDGCHC	6 cut(s)	399, 1473, 2005, 2316, 2609, 2632
SfaNI	GCATC	7 cut(s)	628, 769, 1129, 1157, 1349, 2165, 2446
SfcI	CTRYAG	2 cut(s)	534, 2024
Sfr303I	CCGCGG	1 cut(s)	285
SfuI	TTCGAA	2 cut(s)	609, 857
SgrBI	CCGCGG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	1729
SmiMI	CAYNNNNRTG	2 cut(s)	194, 845
SmlI	CTYRAG	4 cut(s)	497, 1112, 1442, 2633
SmoI	CTYRAG	4 cut(s)	497, 1112, 1442, 2633
SpeI	ACTAGT	1 cut(s)	2396
SseBI	AGGCCT	2 cut(s)	434, 455
SspI	AATATT	1 cut(s)	1492
SstI	GAGCTC	2 cut(s)	399, 2005
StuI	AGGCCT	2 cut(s)	434, 455
StyD4I	CCNGG	4 cut(s)	677, 1335, 1943, 2293
StyI	CCWWGG	3 cut(s)	195, 1397, 1689
TaaI	ACNGT	8 cut(s)	692, 1437, 2177, 2281, 2311, 2443, 2503, 2704
TaiI	ACGT	4 cut(s)	345, 803, 1992, 2413
TaqII	GACCGA	1 cut(s)	1863
TatI	WGTACW	3 cut(s)	493, 2593, 2699
TauI	GCSGC	6 cut(s)	92, 212, 281, 284, 319, 428
TfiI	GAWTC	3 cut(s)	464, 568, 1514
Tru1I	TTAA	8 cut(s)	672, 1611, 1646, 1788, 1832, 1880, 2334, 2642
Tru9I	TTAA	8 cut(s)	672, 1611, 1646, 1788, 1832, 1880, 2334, 2642
TscAI	CASTG	3 cut(s)	1245, 2316, 2508
TseFI	GTSAC	6 cut(s)	94, 700, 1501, 1624, 1748, 2392
TseI	GCWGC	5 cut(s)	299, 1685, 1846, 1922, 2419
Tsp45I	GTSAC	6 cut(s)	94, 700, 1501, 1624, 1748, 2392
TspDTI	ATGAA	9 cut(s)	48, 796, 1016, 1337, 1548, 1922, 2208, 2685, 2702
TspGWI	ACGGA	3 cut(s)	148, 1197, 1495
TspRI	CASTG	3 cut(s)	1245, 2316, 2508
VpaK11BI	GGWCC	1 cut(s)	1729
VspI	ATTAAT	1 cut(s)	1880
XagI	CCTNNNNNAGG	1 cut(s)	1560
XapI	RAATTY	2 cut(s)	225, 2122
XbaI	TCTAGA	2 cut(s)	265, 1157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1327, 1395
ZraI	GACGTC	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	1762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.