Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001352.1

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Forward (+)

43371 .. 44910

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001352.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgcacaaaccaatgctcacatccctcactccaaaatctccatacctcttccccaaacccaccgccaccgccgcctccgccgtcactaacttctccctcgcccattccctccaatccgaaaccctcgaaatcctcgaatggccctccgtctgcaaccacctctccgctctcacctccacctccatgggcttctccgccgcgcagaaggcccaaattcccttcggaaaatccaagtccgagagccagaagcttctagatcaaaccgccgccgcggtctccgccatcgcagccatcggttctccgccgtccgatttccactccattgaggacgtctcggagatcgtaaacgccgccgtttcgggcaaattgctcaccatcaacgagctctgcgctgttcgtagaacactcatagctgcaaaggacttgttcgagaagctgaaggcattagcagattctgataggtacttgccattgcttgaagtacttgaggattgtgattttctagtgaagctggagagaactatagggttgtgcatagactgcaatctttcggagattctcgacacggctagtgaagacttggagatcattaggttcgaaaagaagaggaacatggagaaattggatgctttgttgaaggaaatgtcgtctaagatatttaaggctggtgggattgacagtcctctggtgacgaagcgcagggcgaggatgtgtgtgggtgttcgagctaggtacaagtatttggttccggatggggtggtgttgtatgctagtagttctggtgcgacgtacttcatggagccgagtgaggcggtggagttgaataacatggaagtgaggctttcgaatgctgagaaggctgaggaaataggcattttgagcttccttacatcagaaattgcaaaatcagaacgggagatagtgtatttgttagataagattgtagaagttgatcttgcttttgctagagctgtgtatgctcggtggatgaatggggtatgcccaattttcagttctaaggatggcaaggatttagagaatggtggagctgaaattgggatatcgatagatattgaaggaatacaacatcctttgctccttgagtcatctcttagtagcttgtctgatgcccttgcatccagttctagaagcgcactttcctccaaagacggaaatgatgtaaaaatggtctatcgaagtttatctagtggtgtatcttattttccagtgccaatagatatcaaaattggatatggaaccagattggctgtaatctcagggcctaatactggcgggaaaacagcttccatgaaaactttgggcctggcatctcttatgttgaaagctggaatgtatctgcctgctaaaagccagccaaagcttccatggtttgatcttgttctagctgatattggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

472

Amino Acids

51.06

Weight (kDa)

5.64

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	2 cut(s)	200, 272
AccIII	TCCGGA	1 cut(s)	748
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	4 cut(s)	464, 483, 734, 791
AfiI	CCNNNNNNNGG	1 cut(s)	1289
AgsI	TTSAA	5 cut(s)	479, 637, 823, 1076, 1342
AjnI	CCWGG	1 cut(s)	1323
AjuI	GAANNNNNNNTTGG	2 cut(s)	997, 1029
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	280, 337
AlwNI	CAGNNNCTG	1 cut(s)	455
Aor13HI	TCCGGA	1 cut(s)	748
AoxI	GGCC	4 cut(s)	140, 207, 1280, 1321
ApeKI	GCWGC	2 cut(s)	287, 413
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	4 cut(s)	202, 392, 699, 1154
AspS9I	GGNCC	4 cut(s)	141, 208, 1280, 1321
AsuHPI	GGTGA	3 cut(s)	163, 364, 700
AsuII	TTCGAA	2 cut(s)	597, 845
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	299, 400
BccI	CCATC	5 cut(s)	290, 299, 383, 746, 1016
BceAI	ACGGC	4 cut(s)	65, 289, 338, 582
BciT130I	CCWGG	1 cut(s)	1325
BcoDI	GTCTC	2 cut(s)	280, 337
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	7 cut(s)	72, 198, 267, 270, 288, 351, 414
BlsI	GCNGC	7 cut(s)	73, 199, 268, 271, 289, 352, 415
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	1325
BmgT120I	GGNCC	4 cut(s)	141, 208, 1280, 1321
BmiI	GGNNCC	3 cut(s)	747, 801, 1258
BmrFI	CCNGG	1 cut(s)	1325
BmsI	GCATC	4 cut(s)	616, 1117, 1145, 1337
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	2 cut(s)	597, 845
BpuEI	CTTGAG	2 cut(s)	506, 1121
Bsa29I	ATCGAT	1 cut(s)	1064
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	183, 270, 1385
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 908, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	1289
Bse1I	ACTGG	3 cut(s)	1140, 1226, 1294
Bse3DI	GCAATG	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	748
BseBI	CCWGG	1 cut(s)	1325
BseCI	ATCGAT	1 cut(s)	1064
BseDI	CCNNGG	3 cut(s)	183, 270, 1385
BseGI	GGATG	8 cut(s)	20, 631, 714, 757, 993, 1027, 1087, 1136
BseLI	CCNNNNNNNGG	1 cut(s)	1289
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	3 cut(s)	843, 852, 1290
BseNI	ACTGG	3 cut(s)	1140, 1226, 1294
BseXI	GCAGC	2 cut(s)	299, 400
Bsh1236I	CGCG	2 cut(s)	200, 272
BshFI	GGCC	4 cut(s)	142, 209, 1282, 1323
BshVI	ATCGAT	1 cut(s)	1064
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	1289
BsmAI	GTCTC	2 cut(s)	280, 337
BsmBI	CGTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	4 cut(s)	142, 209, 1282, 1323
Bso31I	GGTCTC	1 cut(s)	280
Bsp119I	TTCGAA	2 cut(s)	597, 845
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	5 cut(s)	256, 339, 585, 952, 1393
Bsp19I	CCATGG	2 cut(s)	183, 1385
BspANI	GGCC	4 cut(s)	142, 209, 1282, 1323
BspCNI	CTCAG	3 cut(s)	844, 853, 1289
BspDI	ATCGAT	1 cut(s)	1064
BspEI	TCCGGA	1 cut(s)	748
BspFNI	CGCG	2 cut(s)	200, 272
BspLI	GGNNCC	3 cut(s)	747, 801, 1258
BspT104I	TTCGAA	2 cut(s)	597, 845
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	1140, 1226, 1294
BssECI	CCNNGG	3 cut(s)	183, 270, 1385
BssMI	GATC	5 cut(s)	256, 339, 585, 952, 1393
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	183, 1385
Bst2UI	CCWGG	1 cut(s)	1325
Bst4CI	ACNGT	1 cut(s)	680
Bst6I	CTCTTC	2 cut(s)	53, 599
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstBI	TTCGAA	2 cut(s)	597, 845
BstC8I	GCNNGC	2 cut(s)	1362, 1373
BstDEI	CTNAG	6 cut(s)	651, 852, 861, 1017, 1112, 1276
BstDSI	CCRYGG	3 cut(s)	183, 270, 1385
BstF5I	GGATG	8 cut(s)	20, 631, 714, 757, 993, 1027, 1087, 1136
BstFNI	CGCG	2 cut(s)	200, 272
BstHHI	GCGC	4 cut(s)	202, 392, 699, 1154
BstKTI	GATC	5 cut(s)	259, 342, 588, 955, 1396
BstMAI	GTCTC	2 cut(s)	280, 337
BstMBI	GATC	5 cut(s)	256, 339, 585, 952, 1393
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 77, 206, 278, 287, 540, 857, 879, 977
BstNI	CCWGG	1 cut(s)	1325
BstSCI	CCNGG	1 cut(s)	1323
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	2 cut(s)	200, 272
BstV1I	GCAGC	2 cut(s)	299, 400
BstV2I	GAAGAC	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	1064
BsuRI	GGCC	4 cut(s)	142, 209, 1282, 1323
BsuTUI	ATCGAT	1 cut(s)	1064
BtgI	CCRYGG	3 cut(s)	183, 270, 1385
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	8 cut(s)	20, 631, 714, 757, 993, 1027, 1087, 1136
BtsIMutI	CAGTG	1 cut(s)	1233
Cac8I	GCNNGC	2 cut(s)	1362, 1373
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	4 cut(s)	202, 392, 699, 1154
Cfr13I	GGNCC	4 cut(s)	141, 208, 1280, 1321
Cfr42I	CCGCGG	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	1064
Csp6I	GTAC	4 cut(s)	463, 482, 733, 790
CviAII	CATG	6 cut(s)	184, 613, 796, 829, 1309, 1386
CviQI	GTAC	4 cut(s)	463, 482, 733, 790
DdeI	CTNAG	6 cut(s)	651, 852, 861, 1017, 1112, 1276
DpnI	GATC	5 cut(s)	258, 341, 587, 954, 1395
DpnII	GATC	5 cut(s)	256, 339, 585, 952, 1393
Eam1104I	CTCTTC	2 cut(s)	53, 599
EarI	CTCTTC	2 cut(s)	53, 599
EciI	GGCGGA	4 cut(s)	67, 184, 268, 291
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	183, 1385
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	280
Eco32I	GATATC	2 cut(s)	1062, 1240
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	1280
EcoRII	CCWGG	1 cut(s)	1323
EcoRV	GATATC	2 cut(s)	1062, 1240
EcoT14I	CCWWGG	2 cut(s)	183, 1385
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	183, 1385
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	6 cut(s)	187, 616, 799, 832, 1312, 1389
FalI	AAGNNNNNCTT	4 cut(s)	825, 857, 939, 971
FatI	CATG	6 cut(s)	183, 612, 795, 828, 1308, 1385
FauI	CCCGC	1 cut(s)	1286
Fnu4HI	GCNGC	7 cut(s)	72, 198, 267, 270, 288, 351, 414
FokI	GGATG	8 cut(s)	7, 638, 721, 764, 1000, 1034, 1074, 1123
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	7 cut(s)	72, 198, 267, 270, 288, 351, 414
GlaI	GCGC	4 cut(s)	201, 391, 698, 1153
GluI	GCNGC	7 cut(s)	72, 198, 267, 270, 288, 351, 414
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	4 cut(s)	142, 209, 1282, 1323
HapII	CCGG	1 cut(s)	749
HhaI	GCGC	4 cut(s)	202, 392, 699, 1154
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	6 cut(s)	187, 616, 799, 832, 1312, 1389
Hin6I	GCGC	4 cut(s)	200, 390, 697, 1152
HinP1I	GCGC	4 cut(s)	200, 390, 697, 1152
HindIII	AAGCTT	2 cut(s)	248, 1379
HinfI	GANTC	3 cut(s)	452, 556, 1103
HpaII	CCGG	1 cut(s)	749
HphI	GGTGA	3 cut(s)	163, 364, 700
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188III	TCNNGA	5 cut(s)	254, 430, 560, 749, 1146
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	790
HpyAV	CCTTC	6 cut(s)	199, 229, 433, 631, 850, 1070
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	2 cut(s)	330, 788
HpyCH4V	TGCA	7 cut(s)	4, 153, 416, 534, 543, 902, 1136
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 77, 206, 278, 287, 540, 857, 879, 977
HpyF3I	CTNAG	6 cut(s)	651, 852, 861, 1017, 1112, 1276
HpySE526I	ACGT	2 cut(s)	330, 788
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	6 cut(s)	187, 616, 799, 832, 1312, 1389
HspAI	GCGC	4 cut(s)	200, 390, 697, 1152
Kpn2I	TCCGGA	1 cut(s)	748
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	256, 339, 585, 952, 1393
LmnI	GCTCC	3 cut(s)	799, 1046, 1101
Lsp1109I	GCAGC	2 cut(s)	299, 400
LweI	GCATC	4 cut(s)	616, 1117, 1145, 1337
MaeII	ACGT	2 cut(s)	330, 788
MaeIII	GTNAC	2 cut(s)	82, 688
MalI	GATC	5 cut(s)	258, 341, 587, 954, 1395
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	5 cut(s)	256, 339, 585, 952, 1393
MboII	GAAGA	3 cut(s)	40, 587, 616
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	7 cut(s)	213, 365, 620, 897, 1005, 1053, 1245
MlyI	GAGTC	1 cut(s)	1112
MroI	TCCGGA	1 cut(s)	748
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	2 cut(s)	182, 833
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	749
MspR9I	CCNGG	1 cut(s)	1325
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	1 cut(s)	1325
MvnI	CGCG	2 cut(s)	200, 272
MwoI	GCNNNNNNNGC	9 cut(s)	71, 77, 206, 278, 287, 540, 857, 879, 977
NcoI	CCATGG	2 cut(s)	183, 1385
NdeII	GATC	5 cut(s)	256, 339, 585, 952, 1393
NlaIII	CATG	6 cut(s)	187, 616, 799, 832, 1312, 1389
NlaIV	GGNNCC	3 cut(s)	747, 801, 1258
NmeAIII	GCCGAG	1 cut(s)	828
NmuCI	GTSAC	2 cut(s)	82, 688
NspV	TTCGAA	2 cut(s)	597, 845
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	853
PfeI	GAWTC	2 cut(s)	452, 556
PkrI	GCNGC	7 cut(s)	73, 199, 268, 271, 289, 352, 415
PleI	GAGTC	1 cut(s)	1111
PpsI	GAGTC	1 cut(s)	1111
Psp124BI	GAGCTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	1323
PspGI	CCWGG	1 cut(s)	1323
PspN4I	GGNNCC	3 cut(s)	747, 801, 1258
PspPI	GGNCC	4 cut(s)	141, 208, 1280, 1321
PstNI	CAGNNNCTG	1 cut(s)	455
RsaI	GTAC	4 cut(s)	464, 483, 734, 791
RsaNI	GTAC	4 cut(s)	463, 482, 733, 790
RseI	CAYNNNNRTG	2 cut(s)	182, 833
SacI	GAGCTC	1 cut(s)	387
SacII	CCGCGG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	7 cut(s)	72, 198, 267, 270, 288, 351, 414
Sau3AI	GATC	5 cut(s)	256, 339, 585, 952, 1393
Sau96I	GGNCC	4 cut(s)	141, 208, 1280, 1321
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	1 cut(s)	1112
ScrFI	CCNGG	1 cut(s)	1325
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	4 cut(s)	616, 1117, 1145, 1337
SfcI	CTRYAG	1 cut(s)	522
Sfr303I	CCGCGG	1 cut(s)	273
SfuI	TTCGAA	2 cut(s)	597, 845
SgrBI	CCGCGG	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	182, 833
SmlI	CTYRAG	2 cut(s)	485, 1100
SmoI	CTYRAG	2 cut(s)	485, 1100
Sse9I	AATT	7 cut(s)	213, 365, 620, 897, 1005, 1053, 1245
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	1323
StyI	CCWWGG	2 cut(s)	183, 1385
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	2 cut(s)	333, 791
TaqI	TCGA	9 cut(s)	126, 135, 429, 561, 597, 724, 845, 1064, 1195
TasI	AATT	7 cut(s)	213, 365, 620, 897, 1005, 1053, 1245
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	5 cut(s)	74, 200, 269, 272, 353
TfiI	GAWTC	2 cut(s)	452, 556
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	1233
TseFI	GTSAC	2 cut(s)	82, 688
TseI	GCWGC	2 cut(s)	287, 413
Tsp45I	GTSAC	2 cut(s)	82, 688
TspDTI	ATGAA	3 cut(s)	784, 1004, 1325
TspGWI	ACGGA	2 cut(s)	136, 1185
TspRI	CASTG	1 cut(s)	1233
XapI	RAATTY	1 cut(s)	213
XbaI	TCTAGA	2 cut(s)	253, 1145
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1315, 1383
ZraI	GACGTC	1 cut(s)	331
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.