Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001352.1

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Forward (+)

45475 .. 46106

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001352.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atggcagcgtctcttcattcagaaacccgggatatttatcatgagatccaagatgaggcagaagatcttgatgtgtgcaagagagctcttatggcaaaggaaaccctacaggagtttgataacggactcaaaactgctggtgctgatcagttaaatttgctgattaagaaatcagaagctgcagttgcatctattattgaggctcacagtcctgaagatggtttcttggttaatgagacttctgaaacttcatacagaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

87

Amino Acids

9.62

Weight (kDa)

4.5

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	55, 218
AluBI	AGCT	2 cut(s)	86, 179
AluI	AGCT	2 cut(s)	86, 179
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	15, 230
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	5, 179
ApoI	RAATTY	1 cut(s)	154
AsuC2I	CCSGG	2 cut(s)	28, 29
AvaI	CYCGRG	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	17, 166
BccI	CCATC	1 cut(s)	212
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	2 cut(s)	28, 29
BcoDI	GTCTC	2 cut(s)	15, 230
BfmI	CTRYAG	2 cut(s)	107, 180
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	6, 180
BlsI	GCNGC	2 cut(s)	7, 181
Bme1390I	CCNGG	2 cut(s)	28, 29
BmeT110I	CYCGRG	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	28, 29
BmsI	GCATC	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	28, 29
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 218
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	55, 218
BseXI	GCAGC	2 cut(s)	17, 166
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	55, 218
BsmAI	GTCTC	2 cut(s)	15, 230
BsmBI	CGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	45, 64, 145
BspHI	TCATGA	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	45, 64, 145
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	18
BstKTI	GATC	3 cut(s)	48, 67, 148
BstMAI	GTCTC	2 cut(s)	15, 230
BstMBI	GATC	3 cut(s)	45, 64, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 185
BstSCI	CCNGG	2 cut(s)	26, 27
BstSFI	CTRYAG	2 cut(s)	107, 180
BstV1I	GCAGC	2 cut(s)	17, 166
BstX2I	RGATCY	2 cut(s)	45, 64
BstYI	RGATCY	2 cut(s)	45, 64
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	40
Cfr9I	CCCGGG	1 cut(s)	27
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	3 cut(s)	86, 179, 203
CviKI_1	RGCY	3 cut(s)	86, 179, 203
DpnI	GATC	3 cut(s)	47, 66, 147
DpnII	GATC	3 cut(s)	45, 64, 145
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	44
FaiI	YATR	3 cut(s)	42, 92, 253
FatI	CATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	6, 180
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	2 cut(s)	6, 180
GluI	GCNGC	2 cut(s)	6, 180
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	22, 175, 244
Hpy188III	TCNNGA	3 cut(s)	41, 68, 212
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	78, 182, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 185
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	45, 64, 145
LpnPI	CCDG	4 cut(s)	41, 95, 123, 225
Lsp1109I	GCAGC	2 cut(s)	17, 166
LweI	GCATC	1 cut(s)	197
MalI	GATC	3 cut(s)	47, 66, 147
MboI	GATC	3 cut(s)	45, 64, 145
MboII	GAAGA	3 cut(s)	5, 74, 227
MflI	RGATCY	2 cut(s)	45, 64
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	49, 193
MseI	TTAA	3 cut(s)	152, 165, 231
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	28, 29
MwoI	GCNNNNNNNGC	2 cut(s)	92, 185
NciI	CCSGG	2 cut(s)	28, 29
NdeII	GATC	3 cut(s)	45, 64, 145
NlaIII	CATG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	7, 181
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	45, 64
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	152, 165, 231
SatI	GCNGC	2 cut(s)	6, 180
Sau3AI	GATC	3 cut(s)	45, 64, 145
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	28, 29
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	88, 181, 262
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	2 cut(s)	107, 180
SmaI	CCCGGG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	154
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	26, 27
TaaI	ACNGT	1 cut(s)	209
TasI	AATT	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	152, 165, 231
Tru9I	TTAA	3 cut(s)	152, 165, 231
TseI	GCWGC	2 cut(s)	5, 179
TspDTI	ATGAA	2 cut(s)	5, 240
TspGWI	ACGGA	1 cut(s)	138
TspMI	CCCGGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	154
XmaI	CCCGGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.