Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Reverse (-)

59195580 .. 59196693

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0434100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGAGTTCATTGGATAGCGGGTGTTCGAACATGAGGTCGAGAAGGAGGCGGCCGAGTGCGGTGGGGGGAAGACGACTTCGTGTTGGCGGTGGAGGGAGGACGTCGAGGACTGTGAGAGTGAAGGTGAAGAAGCTGCAAATGCTGATTCCGGGAGGGAGAGGGTTGGAGGCGGAGAGGCTGTTTCGCCACACGGCGGATTACATAATGTATTTGAGGTTGCAAGTCGATGTTTTGCAAGCGCTTTCCAAGATTTACAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

88

Amino Acids

9.93

Weight (kDa)

11.72

Isoelectric Point (pI)

68.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	107
AciI	CCGC	6 cut(s)	21, 52, 62, 90, 173, 197
AcoI	YGGCCR	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	104
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	136, 262
AluI	AGCT	2 cut(s)	136, 262
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	136
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	16, 139
AsuII	TTCGAA	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	123
BceAI	ACGGC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	2 cut(s)	53, 137
BlsI	GCNGC	2 cut(s)	54, 138
Bme1390I	CCNGG	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	196
BsnI	GGCC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	29
BspACI	CCGC	6 cut(s)	21, 52, 62, 90, 173, 197
BspANI	GGCC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	29
BssNI	GRCGYC	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	244
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	4 cut(s)	55, 136, 181, 262
CviKI_1	RGCY	4 cut(s)	55, 136, 181, 262
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
EciI	GGCGGA	2 cut(s)	188, 212
EclXI	CGGCCG	1 cut(s)	53
Eco47III	AGCGCT	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	53
FaeI	CATG	1 cut(s)	37
FaiI	YATR	2 cut(s)	35, 206
FatI	CATG	1 cut(s)	33
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	53, 137
Fsp4HI	GCNGC	2 cut(s)	53, 137
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	53, 137
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	16, 139
Hpy188III	TCNNGA	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	39, 118
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	139, 223, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	242
LpnPI	CCDG	1 cut(s)	165
Lsp1109I	GCAGC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	104
MboII	GAAGA	2 cut(s)	84, 142
MmeI	TCCRAC	1 cut(s)	147
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	153
NlaIII	CATG	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	54, 138
SatI	GCNGC	2 cut(s)	53, 137
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	6 cut(s)	41, 107, 129, 138, 221, 264
SfuI	TTCGAA	1 cut(s)	29
SsiI	CCGC	6 cut(s)	21, 52, 62, 90, 173, 197
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	4 cut(s)	29, 41, 107, 228
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	136
ZraI	GACGTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.