Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001352.1

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Forward (+)

153906 .. 154382

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001352.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgcaaaaacgaatgctcacatccctcactccaaaatctccatacctcttccccaaacccaccgccaccgccgcctccgccgtcactaacttctccctcgcccattccctccaatccgaaaccctcgaaatcctcgaatggccctccgtctgcaaccacctctccgctctcacctccacctccatgggcttctccgccgcgcagaaggcccaaattcccttcggaaaatccaagtccgagagccagaagcttctagatcaaaccgccgccgcggtctccgccatcgcagtcatcggttctccgccgtccgatttccactccattgaggacgtctcggagatcgtaaacgccgccgtttcgggcaaattgctcaccatcaacgagctctgcgctgttcgtagaacactcatagctgcaaaggacttgttcgagaagctgaaggcattagcagattctgataggtattggtgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

158

Amino Acids

17.03

Weight (kDa)

7.72

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	2 cut(s)	200, 272
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	330
AluBI	AGCT	4 cut(s)	250, 385, 413, 436
AluI	AGCT	4 cut(s)	250, 385, 413, 436
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	280, 337
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	140, 207
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	202, 392
AspS9I	GGNCC	2 cut(s)	141, 208
AsuHPI	GGTGA	2 cut(s)	163, 364
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	290, 383
BceAI	ACGGC	3 cut(s)	65, 289, 338
BcoDI	GTCTC	2 cut(s)	280, 337
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	6 cut(s)	72, 198, 267, 270, 351, 414
BlsI	GCNGC	6 cut(s)	73, 199, 268, 271, 352, 415
BmgT120I	GGNCC	2 cut(s)	141, 208
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	183, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
BseDI	CCNNGG	2 cut(s)	183, 270
BseGI	GGATG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	2 cut(s)	200, 272
BshFI	GGCC	2 cut(s)	142, 209
BsiHKAI	GWGCWC	1 cut(s)	387
BsmAI	GTCTC	2 cut(s)	280, 337
BsmBI	CGTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	142, 209
Bso31I	GGTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	256, 339
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	2 cut(s)	142, 209
BspFNI	CGCG	2 cut(s)	200, 272
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	183, 270
BssMI	GATC	2 cut(s)	256, 339
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	330
BstDSI	CCRYGG	2 cut(s)	183, 270
BstF5I	GGATG	1 cut(s)	20
BstFNI	CGCG	2 cut(s)	200, 272
BstHHI	GCGC	2 cut(s)	202, 392
BstKTI	GATC	2 cut(s)	259, 342
BstMAI	GTCTC	2 cut(s)	280, 337
BstMBI	GATC	2 cut(s)	256, 339
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 77, 206, 278
BstUI	CGCG	2 cut(s)	200, 272
BstV1I	GCAGC	1 cut(s)	400
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	142, 209
BtgI	CCRYGG	2 cut(s)	183, 270
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	2 cut(s)	202, 392
Cfr13I	GGNCC	2 cut(s)	141, 208
Cfr42I	CCGCGG	1 cut(s)	273
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	8 cut(s)	142, 189, 209, 243, 250, 385, 413, 436
CviKI_1	RGCY	8 cut(s)	142, 189, 209, 243, 250, 385, 413, 436
DpnI	GATC	2 cut(s)	258, 341
DpnII	GATC	2 cut(s)	256, 339
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	4 cut(s)	67, 184, 268, 291
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	43, 185, 410
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	72, 198, 267, 270, 351, 414
FokI	GGATG	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	6 cut(s)	72, 198, 267, 270, 351, 414
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	2 cut(s)	201, 391
GluI	GCNGC	6 cut(s)	72, 198, 267, 270, 351, 414
HaeIII	GGCC	2 cut(s)	142, 209
HhaI	GCGC	2 cut(s)	202, 392
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	2 cut(s)	200, 390
HinP1I	GCGC	2 cut(s)	200, 390
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	452
HphI	GGTGA	2 cut(s)	163, 364
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	6 cut(s)	118, 224, 238, 310, 337, 457
Hpy188III	TCNNGA	2 cut(s)	254, 430
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	199, 229, 433
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	4, 153, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 77, 206, 278
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	2 cut(s)	200, 390
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	256, 339
LpnPI	CCDG	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	258, 341
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	2 cut(s)	256, 339
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	2 cut(s)	213, 365
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	18
MvnI	CGCG	2 cut(s)	200, 272
MwoI	GCNNNNNNNGC	4 cut(s)	71, 77, 206, 278
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	256, 339
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	6 cut(s)	73, 199, 268, 271, 352, 415
Psp124BI	GAGCTC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	141, 208
PstNI	CAGNNNCTG	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	387
SacII	CCGCGG	1 cut(s)	273
SatI	GCNGC	6 cut(s)	72, 198, 267, 270, 351, 414
Sau3AI	GATC	2 cut(s)	256, 339
Sau96I	GGNCC	2 cut(s)	141, 208
SduI	GDGCHC	1 cut(s)	387
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	213, 365
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	126, 135, 429
TasI	AATT	2 cut(s)	213, 365
TauI	GCSGC	5 cut(s)	74, 200, 269, 272, 353
TfiI	GAWTC	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	136
XapI	RAATTY	1 cut(s)	213
XbaI	TCTAGA	1 cut(s)	253
XspI	CTAG	1 cut(s)	254
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.