Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Reverse (-)

6109201 .. 6112756

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGCAAAAACCAATGCTCACATCCCTCACTCCAAAATCTCCATACCTCTTCCCCAAACCCACCGCCACCGCCGCCTCCGCCGTCACTAACTTCTCCCTCGCCCATTCCCTCCAATCCGAAACCCTCGAAATCCTCGAATGGCCCTCCGTCTGCAACCACCTCTCCGCTCTCACCTCCACCTCCATGGGCTTCTCCGCCGCGCAGAAGGCCCAAATTCCCTTCGGAAAATCCAAGTCCGAGAGCCAGAAGCTTCTAGATCAAACCGCCGCCGCGGTCTCCGCCATCGCAAAAATCGATTCTCCGCCGTCCGATTTCCACTCCATTGAGGACGTCTCGGAGATCGTAAACGCCGCCGTTTCGGGCAAATTGCTCACCATCAACGAGCTCTGCGCTGTTCGTAGAACACTCATAGCTGCAAAGGACTTGTTCGAGAAGCTGAAGGCATTAGCAGATTCTGATAGGTACTTGCCATTGGTTGAAGTACTTGAGGATTGTGATTTTCTAGTGAAGCTGGAGAGAACTATAGGGTTCTGCATAGACTGCAATCTTTCGGAGATTCTCGACACGGCTAGTGAAGACTTGGAGATCATTAGGTTCGAAAAGAAGAGGAACATGGAGAAATTGGATGCTTTGTTGAAGGAAATGTCGTCTAAGATATTTAAGGCCGGTGGGATTGACAGTCCTTGGTACAAGTATTTGGTTCCGGATGGCGTGGTGCTGGATGCTAGTAGTTCTGGTGCGACGTACTTCATGGAGCCGAGTGAGGCGGTGGAGTTGAATAACATGGAAGTGAGGCTTTCGAATGCTGAGAAGGCTGAGGAAATAGGCATTTTGAGCTTCCTTACATCAGAAATTGCAAAATCAGAAGGGGAGATAGTGTATTTGTTAGATAAGATTGTAGAAGTTGATCTTGCTTTTGCTAGAGCTGTGTATGCTCGGTGGATGAATGGGGTATGCCCAATTTTCAGTTCTAAGGATGGCAAGGATTTAGAGAATGGTGGAGCTGAAATTGGGATATCGATAGATATTGAAGGAATACAACATCCTTTGCTCCTTGAGTCATCTCTTAGTAGTTTGTCTGATGCCCTTGCATCCAGTTCTAGAAGCGCACCTTCCTCCAAAGACGGAAATGATGTAAAAATGGTCTATCGAAGTTTATCTAGTGGTGTATCTGATTTTCCAGTGCCAATAGATATCAAAATTGGATATGGAACCAGAGTGGTTGTAATCTCAGGGCCTAATACTGGCGGGAAAACAGCTTCCATGAAAACTTTGGGCCTGGCATCTCTTATGTCGAAAGCTGGAATGTATCTGCCTGCTAAAAGCCAGCCAAAGCTTCCATGGTTTGATCTTGTTCTAGCTGATATTGGAGATCAACAGTCTCTTGAGCAAAGCCTCTCAACATTTAGTGGGCACATATCACGGATCTGTAATATTTTGGAAGTCGCCTCAAAAGAATCACTTGTCCTCATTGATGAAATTGGTAGTGGAACCGATCCTTCAGAAGGTGTGGCTCTTTCTACCAGCATTTTGCAATATCTCAAAGATCGCGTTAACTTAGCTGTTGTGACTACTCATTACGCGGATTTAAGTCTTCTAAAAGAAAAGGATCACCAGTTTGAAAATGCAGCCATGGAGTTTTCTCCAGAAACCTTACAACCAACTTATCGGGTCCTATGGGGAAGTATTGGTGACTCAAATGCATTGAGTATTGCTAAATCAATTGGTTTTAATCAACAAATAATTGAACGCGCACAAGATTGGGTGGAAAGATTAAGGCCAGAAAAGCAGCAAGAGCGTAAAGGTTTGCTATATCAGTCATTAATAGAGGAAAGAAACAGACTGGAAGCTCAGGCTAAGATGGCAGCGTCTCTTCATTCAGAAACCCGGGATATTTATCATGAGGCAGAAGATCTTGACGTGCGCAAGAGAGCTCTTATGGCAAAGGAAACCCTACAGGTTCGGGAAGAAGTGAAGATTGTCAAATCTCAATTGGAAGCTGTGCTTCAGGAGTTTGATAACCGACTCAAAACTGCTGGTGCTGATCAGCTGAATTTGCTGATAAAGAAATCAGAAGCTGCTATTGCATCTATTATTGAGGCTCACAGTCCTGAAGATGGTTTCTTGGTAAATGAGACATCTGAAACTTCATACACACCTCGATTTGGGGAACAAGTCTATTTGAAGGGACTCAGAGATAAGATAGCTACCGTAGTTGAAGCACCTGGAGATGATGGGACAGTGCTCGTACAATATGGTAAAATTAAGGTTAGGCTGAAGAATAATGAGATCAGAGCTATTCCTAGTAGTGATAAGAATGCCGCGACTAGTTCTGTCCCACGTTTGAAGCAGCGGATTTGGCGGAGCCGTACTGTGGAAAACAAAGATGCGGAGGTTTCTTATAGTCCAGCGGTACAAACATCAAAGAACACAGTGGATCTTCGTGGCATGAGGGCGGAGGAAGCTTCTTACAATCTGGACATGGCCATCGCTACTAGAGAGTCTCAGTCAGTTCTTTTTGTTGTACATGGGATGGGCACAGGGGTTGTCAAAGAGCGAGCACTTGAGCTTTTAAAGAAACATCCACGAGTAGCCAAGTATGAAGCGGAAAGTCCAATGAATTATGGTTGTACAGTTGCTTACATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

883

Amino Acids

96.96

Weight (kDa)

5.32

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_V	PF00488	408 - 592	1.6e-34	MutS domain V
MSSS	PF20297	723 - 764	1.7e-07	MutS2 and Smr-associated SH3 domain
Smr	PF01713	812 - 881	2.7e-10	Smr domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
Acc16I	TGCGCA	1 cut(s)	1925
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	6 cut(s)	200, 272, 1551, 1583, 1752, 2324
AccIII	TCCGGA	1 cut(s)	703
AclWI	GGATC	4 cut(s)	1433, 1490, 1617, 2445
AcoI	YGGCCR	1 cut(s)	2484
AcsI	RAATTY	2 cut(s)	213, 2053
AcuI	CTGAAG	5 cut(s)	458, 1485, 1991, 2133, 2297
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	9 cut(s)	464, 483, 689, 746, 2250, 2371, 2415, 2526, 2632
AfiI	CCNNNNNNNGG	5 cut(s)	1244, 1505, 2117, 2165, 2374
AgsI	TTSAA	9 cut(s)	479, 637, 778, 1031, 1622, 1748, 2185, 2219, 2347
AhlI	ACTAGT	1 cut(s)	2327
AjiI	CACGTC	1 cut(s)	1921
AjnI	CCWGG	2 cut(s)	1278, 2224
AjuI	GAANNNNNNNTTGG	2 cut(s)	952, 984
Alw21I	GWGCWC	4 cut(s)	387, 1936, 2247, 2563
Alw26I	GTCTC	6 cut(s)	280, 337, 1386, 1875, 2129, 2508
AlwI	GGATC	4 cut(s)	1433, 1490, 1617, 2445
AlwNI	CAGNNNCTG	2 cut(s)	455, 2078
Ama87I	CYCGRG	1 cut(s)	1887
Aor13HI	TCCGGA	1 cut(s)	703
AoxI	GGCC	7 cut(s)	140, 207, 663, 1235, 1276, 1778, 2484
ApeKI	GCWGC	6 cut(s)	413, 1628, 1789, 1865, 2078, 2350
ApoI	RAATTY	2 cut(s)	213, 2053
AseI	ATTAAT	1 cut(s)	1823
AspLEI	GCGC	5 cut(s)	202, 392, 1109, 1754, 1926
AspS9I	GGNCC	5 cut(s)	141, 208, 1235, 1276, 1672
AsuC2I	CCSGG	2 cut(s)	1888, 1889
AsuHPI	GGTGA	4 cut(s)	163, 364, 1604, 1703
AsuII	TTCGAA	2 cut(s)	597, 800
AvaI	CYCGRG	1 cut(s)	1887
AvaII	GGWCC	1 cut(s)	1672
BaeGI	GKGCMC	2 cut(s)	1416, 2540
BalI	TGGCCA	1 cut(s)	2486
BanII	GRGCYC	2 cut(s)	387, 1936
BauI	CACGAG	1 cut(s)	2586
BbsI	GAAGAC	2 cut(s)	582, 1586
Bbv12I	GWGCWC	4 cut(s)	387, 1936, 2247, 2563
BbvCI	CCTCAGC	1 cut(s)	816
BbvI	GCAGC	6 cut(s)	400, 1640, 1801, 1877, 2065, 2362
BccI	CCATC	9 cut(s)	290, 383, 701, 971, 1855, 2111, 2228, 2495, 2527
BceAI	ACGGC	5 cut(s)	65, 289, 338, 582, 2352
BciT130I	CCWGG	2 cut(s)	1280, 2226
BclI	TGATCA	1 cut(s)	2044
BcnI	CCSGG	2 cut(s)	1888, 1889
BcoDI	GTCTC	6 cut(s)	280, 337, 1386, 1875, 2129, 2508
BcuI	ACTAGT	1 cut(s)	2327
BfmI	CTRYAG	2 cut(s)	522, 1955
BglII	AGATCT	1 cut(s)	1912
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	4 cut(s)	1280, 1888, 1889, 2226
Bme18I	GGWCC	1 cut(s)	1672
BmeT110I	CYCGRG	1 cut(s)	1887
BmgBI	CACGTC	1 cut(s)	1921
BmgT120I	GGNCC	5 cut(s)	141, 208, 1235, 1276, 1672
BmiI	GGNNCC	6 cut(s)	702, 756, 1213, 1492, 1673, 2366
BmrFI	CCNGG	4 cut(s)	1280, 1888, 1889, 2226
BmsI	GCATC	7 cut(s)	616, 712, 1072, 1100, 1292, 2096, 2377
BpiI	GAAGAC	2 cut(s)	582, 1586
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	3 cut(s)	533, 1629, 2247
Bpu10I	CCTNAGC	2 cut(s)	816, 1851
Bpu14I	TTCGAA	2 cut(s)	597, 800
BpuEI	CTTGAG	4 cut(s)	506, 1076, 1406, 2585
BpuMI	CCSGG	2 cut(s)	1888, 1889
Bsa29I	ATCGAT	2 cut(s)	294, 1019
BsaBI	GATNNNNATC	1 cut(s)	1896
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	6 cut(s)	183, 270, 683, 1340, 1632, 1887
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 863, 893
Bsc4I	CCNNNNNNNGG	5 cut(s)	1244, 1505, 2117, 2165, 2374
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	5 cut(s)	1095, 1181, 1249, 1615, 1848
Bse8I	GATNNNNATC	1 cut(s)	1896
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	2 cut(s)	1280, 2226
BseCI	ATCGAT	2 cut(s)	294, 1019
BseDI	CCNNGG	6 cut(s)	183, 270, 683, 1340, 1632, 1887
BseJI	GATNNNNATC	1 cut(s)	1896
BseLI	CCNNNNNNNGG	5 cut(s)	1244, 1505, 2117, 2165, 2374
BseMII	CTCAG	6 cut(s)	798, 807, 1245, 1865, 2206, 2519
BseNI	ACTGG	5 cut(s)	1095, 1181, 1249, 1615, 1848
BseSI	GKGCMC	2 cut(s)	1416, 2540
BseXI	GCAGC	6 cut(s)	400, 1640, 1801, 1877, 2065, 2362
Bsh1236I	CGCG	6 cut(s)	200, 272, 1551, 1583, 1752, 2324
BshFI	GGCC	7 cut(s)	142, 209, 665, 1237, 1278, 1780, 2486
BshVI	ATCGAT	2 cut(s)	294, 1019
BsiHKAI	GWGCWC	4 cut(s)	387, 1936, 2247, 2563
BsiHKCI	CYCGRG	1 cut(s)	1887
BsiSI	CCGG	3 cut(s)	666, 704, 1888
BslFI	GGGAC	3 cut(s)	2202, 2251, 2321
BslI	CCNNNNNNNGG	5 cut(s)	1244, 1505, 2117, 2165, 2374
BsmAI	GTCTC	6 cut(s)	280, 337, 1386, 1875, 2129, 2508
BsmBI	CGTCTC	2 cut(s)	337, 1875
BsmFI	GGGAC	3 cut(s)	2202, 2251, 2321
BsmI	GAATGC	2 cut(s)	808, 2323
BsnI	GGCC	7 cut(s)	142, 209, 665, 1237, 1278, 1780, 2486
Bso31I	GGTCTC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	1887
Bsp119I	TTCGAA	2 cut(s)	597, 800
Bsp1286I	GDGCHC	6 cut(s)	387, 1416, 1936, 2247, 2540, 2563
Bsp13I	TCCGGA	1 cut(s)	703
Bsp1407I	TGTACA	2 cut(s)	2524, 2630
Bsp19I	CCATGG	3 cut(s)	183, 1340, 1632
BspANI	GGCC	7 cut(s)	142, 209, 665, 1237, 1278, 1780, 2486
BspCNI	CTCAG	6 cut(s)	799, 808, 1244, 1864, 2205, 2518
BspDI	ATCGAT	2 cut(s)	294, 1019
BspEI	TCCGGA	1 cut(s)	703
BspFNI	CGCG	6 cut(s)	200, 272, 1551, 1583, 1752, 2324
BspHI	TCATGA	1 cut(s)	1900
BspLI	GGNNCC	6 cut(s)	702, 756, 1213, 1492, 1673, 2366
BspPI	GGATC	4 cut(s)	1433, 1490, 1617, 2445
BspT104I	TTCGAA	2 cut(s)	597, 800
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	665
BsrGI	TGTACA	2 cut(s)	2524, 2630
BsrI	ACTGG	5 cut(s)	1095, 1181, 1249, 1615, 1848
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	6 cut(s)	183, 270, 683, 1340, 1632, 1887
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	2586
BssT1I	CCWWGG	4 cut(s)	183, 683, 1340, 1632
Bst2BI	CACGAG	1 cut(s)	2586
Bst2UI	CCWGG	2 cut(s)	1280, 2226
Bst4CI	ACNGT	8 cut(s)	680, 1380, 2108, 2212, 2242, 2374, 2434, 2635
Bst6I	CTCTTC	3 cut(s)	53, 599, 1878
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstAUI	TGTACA	2 cut(s)	2524, 2630
BstBI	TTCGAA	2 cut(s)	597, 800
BstC8I	GCNNGC	3 cut(s)	1317, 1328, 2559
BstDSI	CCRYGG	4 cut(s)	183, 270, 1340, 1632
BstENI	CCTNNNNNAGG	1 cut(s)	1503
BstFNI	CGCG	6 cut(s)	200, 272, 1551, 1583, 1752, 2324
BstHHI	GCGC	5 cut(s)	202, 392, 1109, 1754, 1926
BstMAI	GTCTC	6 cut(s)	280, 337, 1386, 1875, 2129, 2508
BstNI	CCWGG	2 cut(s)	1280, 2226
BstSCI	CCNGG	4 cut(s)	1278, 1886, 1887, 2224
BstSFI	CTRYAG	2 cut(s)	522, 1955
BstSLI	GKGCMC	2 cut(s)	1416, 2540
BstUI	CGCG	6 cut(s)	200, 272, 1551, 1583, 1752, 2324
BstV1I	GCAGC	6 cut(s)	400, 1640, 1801, 1877, 2065, 2362
BstV2I	GAAGAC	2 cut(s)	582, 1586
BstX2I	RGATCY	3 cut(s)	1425, 1912, 2437
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	3 cut(s)	1425, 1912, 2437
Bsu15I	ATCGAT	2 cut(s)	294, 1019
BsuRI	GGCC	7 cut(s)	142, 209, 665, 1237, 1278, 1780, 2486
BsuTUI	ATCGAT	2 cut(s)	294, 1019
BtgI	CCRYGG	4 cut(s)	183, 270, 1340, 1632
BtgZI	GCGATG	2 cut(s)	268, 2473
BtrI	CACGTC	1 cut(s)	1921
BtsIMutI	CAGTG	3 cut(s)	1188, 2247, 2439
Cac8I	GCNNGC	3 cut(s)	1317, 1328, 2559
CaiI	CAGNNNCTG	2 cut(s)	455, 2078
CciI	TCATGA	1 cut(s)	1900
CfoI	GCGC	5 cut(s)	202, 392, 1109, 1754, 1926
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	5 cut(s)	141, 208, 1235, 1276, 1672
Cfr42I	CCGCGG	1 cut(s)	273
Cfr9I	CCCGGG	1 cut(s)	1887
ClaI	ATCGAT	2 cut(s)	294, 1019
CseI	GACGC	1 cut(s)	1857
Csp6I	GTAC	9 cut(s)	463, 482, 688, 745, 2249, 2370, 2414, 2525, 2631
CviQI	GTAC	9 cut(s)	463, 482, 688, 745, 2249, 2370, 2414, 2525, 2631
DraI	TTTAAA	1 cut(s)	2574
EaeI	YGGCCR	1 cut(s)	2484
Eam1104I	CTCTTC	3 cut(s)	53, 599, 1878
EarI	CTCTTC	3 cut(s)	53, 599, 1878
EciI	GGCGGA	6 cut(s)	67, 184, 268, 291, 2377, 2471
Ecl136II	GAGCTC	2 cut(s)	385, 1934
Eco130I	CCWWGG	4 cut(s)	183, 683, 1340, 1632
Eco24I	GRGCYC	2 cut(s)	387, 1936
Eco31I	GGTCTC	1 cut(s)	280
Eco32I	GATATC	2 cut(s)	1017, 1195
Eco47I	GGWCC	1 cut(s)	1672
Eco53kI	GAGCTC	2 cut(s)	385, 1934
Eco57I	CTGAAG	5 cut(s)	458, 1485, 1991, 2133, 2297
Eco88I	CYCGRG	1 cut(s)	1887
EcoICRI	GAGCTC	2 cut(s)	385, 1934
EcoNI	CCTNNNNNAGG	1 cut(s)	1503
EcoO109I	RGGNCCY	2 cut(s)	1235, 1672
EcoRII	CCWGG	2 cut(s)	1278, 2224
EcoRV	GATATC	2 cut(s)	1017, 1195
EcoT14I	CCWWGG	4 cut(s)	183, 683, 1340, 1632
EcoT22I	ATGCAT	1 cut(s)	1705
EcoT38I	GRGCYC	2 cut(s)	387, 1936
ErhI	CCWWGG	4 cut(s)	183, 683, 1340, 1632
Esp3I	CGTCTC	2 cut(s)	337, 1875
FaqI	GGGAC	3 cut(s)	2202, 2251, 2321
FauI	CCCGC	1 cut(s)	1241
FbaI	TGATCA	1 cut(s)	2044
FriOI	GRGCYC	2 cut(s)	387, 1936
FspI	TGCGCA	1 cut(s)	1925
GlaI	GCGC	5 cut(s)	201, 391, 1108, 1753, 1925
GsuI	CTGGAG	3 cut(s)	533, 1629, 2247
HaeIII	GGCC	7 cut(s)	142, 209, 665, 1237, 1278, 1780, 2486
HapII	CCGG	3 cut(s)	666, 704, 1888
HgaI	GACGC	1 cut(s)	1857
HhaI	GCGC	5 cut(s)	202, 392, 1109, 1754, 1926
Hin1I	GRCGYC	1 cut(s)	330
Hin6I	GCGC	5 cut(s)	200, 390, 1107, 1752, 1924
HinP1I	GCGC	5 cut(s)	200, 390, 1107, 1752, 1924
HincII	GTYRAC	1 cut(s)	1555
HindII	GTYRAC	1 cut(s)	1555
HindIII	AAGCTT	3 cut(s)	248, 1334, 2463
HinfI	GANTC	9 cut(s)	296, 452, 556, 1058, 1457, 1694, 2025, 2190, 2501
HpaI	GTTAAC	1 cut(s)	1555
HpaII	CCGG	3 cut(s)	666, 704, 1888
HphI	GGTGA	4 cut(s)	163, 364, 1604, 1703
Hpy166II	GTNNAC	2 cut(s)	346, 1555
Hpy8I	GTNNAC	2 cut(s)	346, 1555
Hpy99I	CGWCG	1 cut(s)	745
HpyCH4III	ACNGT	8 cut(s)	680, 1380, 2108, 2212, 2242, 2374, 2434, 2635
HpyCH4IV	ACGT	4 cut(s)	330, 743, 1920, 2341
HpySE526I	ACGT	4 cut(s)	330, 743, 1920, 2341
Hsp92I	GRCGYC	1 cut(s)	330
HspAI	GCGC	5 cut(s)	200, 390, 1107, 1752, 1924
Kpn2I	TCCGGA	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	2044
KspAI	GTTAAC	1 cut(s)	1555
KspI	CCGCGG	1 cut(s)	273
LmnI	GCTCC	4 cut(s)	754, 1001, 1056, 2364
Lsp1109I	GCAGC	6 cut(s)	400, 1640, 1801, 1877, 2065, 2362
LweI	GCATC	7 cut(s)	616, 712, 1072, 1100, 1292, 2096, 2377
MaeII	ACGT	4 cut(s)	330, 743, 1920, 2341
MaeIII	GTNAC	3 cut(s)	82, 1567, 1691
MbiI	CCGCTC	1 cut(s)	167
MfeI	CAATTG	2 cut(s)	1722, 1991
MflI	RGATCY	3 cut(s)	1425, 1912, 2437
MhlI	GDGCHC	6 cut(s)	387, 1416, 1936, 2247, 2540, 2563
MlsI	TGGCCA	1 cut(s)	2486
MluNI	TGGCCA	1 cut(s)	2486
MlyI	GAGTC	5 cut(s)	1067, 1688, 2019, 2184, 2510
Mox20I	TGGCCA	1 cut(s)	2486
Mph1103I	ATGCAT	1 cut(s)	1705
MroI	TCCGGA	1 cut(s)	703
MscI	TGGCCA	1 cut(s)	2486
MseI	TTAA	8 cut(s)	660, 1554, 1589, 1731, 1775, 1823, 2265, 2573
MslI	CAYNNNNRTG	2 cut(s)	182, 788
Msp20I	TGGCCA	1 cut(s)	2486
MspA1I	CMGCKG	4 cut(s)	272, 2050, 2353, 2411
MspI	CCGG	3 cut(s)	666, 704, 1888
MspR9I	CCNGG	4 cut(s)	1280, 1888, 1889, 2226
MunI	CAATTG	2 cut(s)	1722, 1991
Mva1269I	GAATGC	2 cut(s)	808, 2323
MvaI	CCWGG	2 cut(s)	1280, 2226
MvnI	CGCG	6 cut(s)	200, 272, 1551, 1583, 1752, 2324
NciI	CCSGG	2 cut(s)	1888, 1889
NcoI	CCATGG	3 cut(s)	183, 1340, 1632
NlaIV	GGNNCC	6 cut(s)	702, 756, 1213, 1492, 1673, 2366
NmeAIII	GCCGAG	1 cut(s)	783
NmuCI	GTSAC	3 cut(s)	82, 1567, 1691
NsbI	TGCGCA	1 cut(s)	1925
NsiI	ATGCAT	1 cut(s)	1705
NspV	TTCGAA	2 cut(s)	597, 800
PagI	TCATGA	1 cut(s)	1900
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 291
PctI	GAATGC	2 cut(s)	808, 2323
PfeI	GAWTC	4 cut(s)	296, 452, 556, 1457
PleI	GAGTC	5 cut(s)	1066, 1688, 2019, 2184, 2509
PpsI	GAGTC	5 cut(s)	1066, 1688, 2019, 2184, 2509
PpuMI	RGGWCCY	1 cut(s)	1672
PshBI	ATTAAT	1 cut(s)	1823
Psp124BI	GAGCTC	2 cut(s)	387, 1936
Psp5II	RGGWCCY	1 cut(s)	1672
Psp6I	CCWGG	2 cut(s)	1278, 2224
PspGI	CCWGG	2 cut(s)	1278, 2224
PspN4I	GGNNCC	6 cut(s)	702, 756, 1213, 1492, 1673, 2366
PspPI	GGNCC	5 cut(s)	141, 208, 1235, 1276, 1672
PspPPI	RGGWCCY	1 cut(s)	1672
PstNI	CAGNNNCTG	2 cut(s)	455, 2078
PsuI	RGATCY	3 cut(s)	1425, 1912, 2437
PvuII	CAGCTG	1 cut(s)	2050
RsaI	GTAC	9 cut(s)	464, 483, 689, 746, 2250, 2371, 2415, 2526, 2632
RsaNI	GTAC	9 cut(s)	463, 482, 688, 745, 2249, 2370, 2414, 2525, 2631
RseI	CAYNNNNRTG	2 cut(s)	182, 788
SacI	GAGCTC	2 cut(s)	387, 1936
SacII	CCGCGG	1 cut(s)	273
SaqAI	TTAA	8 cut(s)	660, 1554, 1589, 1731, 1775, 1823, 2265, 2573
Sau96I	GGNCC	5 cut(s)	141, 208, 1235, 1276, 1672
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	5 cut(s)	1067, 1688, 2019, 2184, 2510
ScrFI	CCNGG	4 cut(s)	1280, 1888, 1889, 2226
SduI	GDGCHC	6 cut(s)	387, 1416, 1936, 2247, 2540, 2563
SfaNI	GCATC	7 cut(s)	616, 712, 1072, 1100, 1292, 2096, 2377
SfcI	CTRYAG	2 cut(s)	522, 1955
Sfr303I	CCGCGG	1 cut(s)	273
SfuI	TTCGAA	2 cut(s)	597, 800
SgrBI	CCGCGG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	1672
SmaI	CCCGGG	1 cut(s)	1889
SmiMI	CAYNNNNRTG	2 cut(s)	182, 788
SmlI	CTYRAG	4 cut(s)	485, 1055, 1385, 2564
SmoI	CTYRAG	4 cut(s)	485, 1055, 1385, 2564
SpeI	ACTAGT	1 cut(s)	2327
SspI	AATATT	1 cut(s)	1435
SstI	GAGCTC	2 cut(s)	387, 1936
StyD4I	CCNGG	4 cut(s)	1278, 1886, 1887, 2224
StyI	CCWWGG	4 cut(s)	183, 683, 1340, 1632
TaaI	ACNGT	8 cut(s)	680, 1380, 2108, 2212, 2242, 2374, 2434, 2635
TaiI	ACGT	4 cut(s)	333, 746, 1923, 2344
TatI	WGTACW	3 cut(s)	481, 2524, 2630
TauI	GCSGC	6 cut(s)	74, 200, 269, 272, 353, 2324
TfiI	GAWTC	4 cut(s)	296, 452, 556, 1457
Tru1I	TTAA	8 cut(s)	660, 1554, 1589, 1731, 1775, 1823, 2265, 2573
Tru9I	TTAA	8 cut(s)	660, 1554, 1589, 1731, 1775, 1823, 2265, 2573
TscAI	CASTG	3 cut(s)	1188, 2247, 2439
TseFI	GTSAC	3 cut(s)	82, 1567, 1691
TseI	GCWGC	6 cut(s)	413, 1628, 1789, 1865, 2078, 2350
Tsp45I	GTSAC	3 cut(s)	82, 1567, 1691
TspDTI	ATGAA	8 cut(s)	739, 959, 1280, 1491, 1865, 2139, 2616, 2633
TspGWI	ACGGA	3 cut(s)	136, 1140, 1438
TspMI	CCCGGG	1 cut(s)	1887
TspRI	CASTG	3 cut(s)	1188, 2247, 2439
VpaK11BI	GGWCC	1 cut(s)	1672
VspI	ATTAAT	1 cut(s)	1823
XagI	CCTNNNNNAGG	1 cut(s)	1503
XapI	RAATTY	2 cut(s)	213, 2053
XbaI	TCTAGA	2 cut(s)	253, 1100
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1270, 1338
XmaI	CCCGGG	1 cut(s)	1887
ZraI	GACGTC	1 cut(s)	331
ZrmI	AGTACT	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	1705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.