Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005368

Physical Location & Seq

Genomic Coordinates Forward (+)

4855638 .. 4859004

Gene Structure 3367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2526 bp

ATGGGCTTCTCCGCCGCGCAGAAGGCCCAAATTCCCTTCGGAAAATCCAAGTCCGAGAGCCAGAAGCTTCTAGATCAAACCGCCGCCGCGGTTTCCGCCATCGCAGCCATCGGTTATCCGCCGTCCGATTTCCGCTCCATCGAGGACGTCTCGGAGATCGTAAACGCCGCCGTTTCGGGCAAATTGCTCACCATCAACGAGCTCTGCGCTGTGCGTAGAACACTCATAGCCGCAAAGGCCTTGTTCCAGAAGCTGAAGGCCTTAGCAGATTCTGATAGGTACTTGCCATTGCTTGAAGTACTTGAGGGTTGTGATTTTCTAGTGAGGCTGGAGAGAACTATAGGGTTGTGCATAGACTGCAATCTTTCGGAGATTCTCGACACGGCTAGTGAAGACTTGGAGATCATTAGGTTCGAAAAGAAGAGGAACATGGACAAATTGGATGCTTTGTTGAAGGATATGTCGTCTAAGATATTTAAGGCTGGTGGGATTGACAGTCCTTTGGTGACGAAGCGCAGGGCGAGGATGTGTGTGGGTGTTAGAGCTAGGTACAAGTATTTGGTTCCGGATGGGGTGGTGTTGGATGCTAGTAGTTCTGGAGCGACGTACTTCATGGAGCCGAGTGAGGCGGTGGAGTTGAATAACATGGAAGTGAGGCTTTCGAATGCTGAGAAGGCTGAGGAGATAGGCATTTTGAGCTTCCTTACATCGGAAATTGCAAAATCGGAAGCGGAGATAGTGTATTTGTTAGATAAGATTGTAGAAGTTGATCTTGCTTTTGCTAGAGCTGCGTATGCTCAGTGGATGAATGGGGTATGCCCAATTTTCAGTTCTAAGGATGGCAAGGATTTAGATAATGGTGGAGCTGAAATTGGGATATCGGTAGATATCGAAGGAATACAACATCCTTTGCTCCTCGAGTCATCTCTTAGAATTTTGTCTGATGCAAGGGCATCCAGTTCTAGAAGTGCACTTTCCTCCAAAGACGGAAATGATGTAAAAATGGTCTATCGAAGTTTATCTAGTGGTGTATCTGATTTTCCAGTGCCAATAGATATCAAAATTGGATATGGAACCAGAGTGGTTGTGATCTCAGGGCCTAATACTGGCGGGAAAACAGCTTCCATGAAAACTTTGGGCCTGGCATCTCTTATGTCGAAAGCTGGAATGTATCTGCCTGCTAAAAGCCAGCCAAAGCTTCCATGGTTTGATCTTGTTCTAGCTGATATTGGAGATCAACAGTCTCTTGAGCAAAGCCTCTCAACATTTAGTGGACACATATCACGGATCTGTAATATTTTGGAAGTCGCCTCAAAAGAATCACTTGTCCTCATTGATGAAATTGGTAGTGGAACCGATCCTTCAGAAGGTGTGGCTCTTTCTACCTGCATCTTGCAATATCTCAAAGATCGTGTTAACTTAGCTGTTGTGACTACTCATTACGCGGATTTAAGTCTTCTAAAAGAAAAGGATCACCAGTTTGAAAATGCAGCCATGGAGTTTTCTCCAGAAACCTTACAGCCAACTTATCGGGTCCTATGGGGAAGTATTGGTGACTCAAATGCATTGAGTATTGCTAAATCAATTGGTTTTAATCAACAAATAATTGAACGCGCACAAGATTGGGTGGAAAGATTAAGGCCAGAAAAGCAGCAAGAGCGTAAAGGTTTGCTATATCGGTCATTAATAGAGGAAAGAAACAGACTGGAAGCTCAGACTAAGATGGCAGCGTCTCTTCATTCAGAAACCAGGGATATTTATCATGAGATCCAAGATGAGGCAGAAGATCTTGACGTGCGCAAGAGAGCTCTTATGGCAAAGGAAACCCTACAGGTTCGGGAAGAAGTGAAGATTGTCAAATCTCAATTGGAAGCTGTGCTTCAGGAGTTTGATAACCGACTCAAAACTGCTGGTGCTGATCAGTTGAATTTGCTGATTAAGAAATCAGAAGCTGCAGTTGCATCTATTATTGAGGCTTACAGTCCTGAATATGGTTTCTTGGTAAATGAGACATCTGAAACTTCATACACACCTCGATTTGGGGAACAAGTCTATTTGAAGGGACTCAGAGATAAGATAGCTACCGTAGTTGAAGCACCTGGAGATGATGGGACAGTGCTCGTACAATATGGTAAAATTAAGGTTAGGTTGAAGAATAATGAGATCAGAGCTATTCCTAGTAGTGATAAGAATGCCGTGACTAGTTCTGTCCCACGTTTGAAGCAGCGGGTTTGGCGGAGCCGTACTGCAGAAAACAAAGATGGGGAGGTTTCTTATAGTCCAGCGGTACAAACATCAAAGAACACAGTGGATCTTCGTGGCATGAGGGCGGAGGAAGCTTCTTACAATCTGGACATGGCCATCGCAGCTAGAGAGTCTCAGTCAGTTCTTTTTGTTGTACATGGGATGGGCACAGGGGTTGTCAAAGAGCGAGCACTTGAGATTTTAAAGAAACATCCACGAGTAGCCAAGTATGAAGCGGAAAGTCCAATGAATTATGGTTGTACAGTTGCTTACATAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030983 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

MutS_V Smr

Protein Analysis

841

Amino Acids

92.57

Weight (kDa)

5.69

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_V	PF00488	362 - 546	3.8e-34	MutS domain V
MSSS	PF20297	681 - 722	1.6e-07	MutS2 and Smr-associated SH3 domain
Smr	PF01713	770 - 839	1.8e-10	Smr domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65070 AT1G65070 AT1G65070 AT1G65070
fragaria_vesca	FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390 FvH4_3g09390
malus_domestica	MD00G1095300.v1.1
prunus_persica	Prupe.4G045200_v2.0.a1
pyrus_communis	pycom10g24790
rosa_chinensis	RchiOBHm_Chr5g0008191
rosa_laevigata	RLG00000031545
rosa_multiflora	Rmu_co8487121.1_g000001 Rmu_sc0001352.1_g000007 Rmu_sc0001352.1_g000008 Rmu_sc0001352.1_g000029 Rmu_sc0001626.1_g000010
rosa_roxburghii	Rroxscaffold_1G00068290
rosa_rugosa	Rorug04G0434000 Rorug04G0434100
rosa_samantha	Rh5AG062400 Rh5BG058700 Rh5CG069200 Rh5DG058100
rosa_wichuraiana	Rw5G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc16I	TGCGCA	1 cut(s)	1799
Acc36I	ACCTGC	1 cut(s)	1394
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	4 cut(s)	17, 89, 1445, 1614
AccIII	TCCGGA	1 cut(s)	565
AclWI	GGATC	5 cut(s)	1295, 1352, 1479, 1762, 2319
AcoI	YGGCCR	1 cut(s)	2358
AcsI	RAATTY	3 cut(s)	30, 933, 1927
AcuI	CTGAAG	3 cut(s)	275, 1347, 1865
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	9 cut(s)	281, 300, 551, 608, 2124, 2245, 2289, 2400, 2506
AfiI	CCNNNNNNNGG	6 cut(s)	709, 1106, 1367, 1777, 1991, 2039
AhlI	ACTAGT	1 cut(s)	2201
AjiI	CACGTC	1 cut(s)	1795
AjnI	CCWGG	3 cut(s)	1140, 1748, 2098
AjuI	GAANNNNNNNTTGG	2 cut(s)	814, 846
Alw21I	GWGCWC	5 cut(s)	204, 973, 1810, 2121, 2437
Alw26I	GTCTC	5 cut(s)	154, 1248, 1737, 2003, 2382
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	5 cut(s)	1295, 1352, 1479, 1762, 2319
AlwNI	CAGNNNCTG	3 cut(s)	253, 272, 1952
Ama87I	CYCGRG	1 cut(s)	917
Aor13HI	TCCGGA	1 cut(s)	565
AoxI	GGCC	7 cut(s)	24, 237, 258, 1097, 1138, 1640, 2358
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	8 cut(s)	104, 788, 1490, 1651, 1727, 1952, 2224, 2366
ApoI	RAATTY	3 cut(s)	30, 933, 1927
AseI	ATTAAT	1 cut(s)	1685
AspLEI	GCGC	5 cut(s)	19, 209, 516, 1616, 1800
AspS9I	GGNCC	4 cut(s)	25, 1097, 1138, 1534
AsuHPI	GGTGA	4 cut(s)	181, 517, 1466, 1565
AsuII	TTCGAA	2 cut(s)	414, 662
AvaI	CYCGRG	1 cut(s)	917
AvaII	GGWCC	1 cut(s)	1534
BaeGI	GKGCMC	2 cut(s)	973, 2414
BalI	TGGCCA	1 cut(s)	2360
BanII	GRGCYC	2 cut(s)	204, 1810
BauI	CACGAG	1 cut(s)	2460
BbsI	GAAGAC	2 cut(s)	399, 1448
Bbv12I	GWGCWC	5 cut(s)	204, 973, 1810, 2121, 2437
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	8 cut(s)	116, 775, 1502, 1663, 1739, 1939, 2236, 2378
BceAI	ACGGC	5 cut(s)	106, 155, 399, 2180, 2226
BciT130I	CCWGG	3 cut(s)	1142, 1750, 2100
BclI	TGATCA	1 cut(s)	1918
BcoDI	GTCTC	5 cut(s)	154, 1248, 1737, 2003, 2382
BcuI	ACTAGT	1 cut(s)	2201
BfmI	CTRYAG	4 cut(s)	339, 1829, 1953, 2247
BfuAI	ACCTGC	1 cut(s)	1394
BglI	GCCNNNNNGGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	1786
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	1142, 1750, 2100
Bme18I	GGWCC	1 cut(s)	1534
BmeT110I	CYCGRG	1 cut(s)	917
BmgBI	CACGTC	1 cut(s)	1795
BmgT120I	GGNCC	4 cut(s)	25, 1097, 1138, 1534
BmiI	GGNNCC	6 cut(s)	564, 618, 1075, 1354, 1535, 2240
BmrFI	CCNGG	3 cut(s)	1142, 1750, 2100
BmsI	GCATC	7 cut(s)	433, 574, 934, 962, 1154, 1398, 1970
BpiI	GAAGAC	2 cut(s)	399, 1448
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	4 cut(s)	350, 618, 1491, 2121
Bpu10I	CCTNAGC	2 cut(s)	262, 678
Bpu14I	TTCGAA	2 cut(s)	414, 662
BpuEI	CTTGAG	3 cut(s)	323, 1268, 2459
BsaBI	GATNNNNATC	1 cut(s)	1758
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	87, 1202, 1494, 1749
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	6 cut(s)	709, 1106, 1367, 1777, 1991, 2039
Bse1I	ACTGG	5 cut(s)	957, 1043, 1111, 1477, 1710
Bse3DI	GCAATG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	1758
BseAI	TCCGGA	1 cut(s)	565
BseBI	CCWGG	3 cut(s)	1142, 1750, 2100
BseDI	CCNNGG	4 cut(s)	87, 1202, 1494, 1749
BseJI	GATNNNNATC	1 cut(s)	1758
BseLI	CCNNNNNNNGG	6 cut(s)	709, 1106, 1367, 1777, 1991, 2039
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	7 cut(s)	660, 669, 812, 1107, 1727, 2080, 2393
BseNI	ACTGG	5 cut(s)	957, 1043, 1111, 1477, 1710
BseRI	GAGGAG	2 cut(s)	695, 905
BseSI	GKGCMC	2 cut(s)	973, 2414
BseXI	GCAGC	8 cut(s)	116, 775, 1502, 1663, 1739, 1939, 2236, 2378
Bsh1236I	CGCG	4 cut(s)	17, 89, 1445, 1614
BshFI	GGCC	7 cut(s)	26, 239, 260, 1099, 1140, 1642, 2360
BsiHKAI	GWGCWC	5 cut(s)	204, 973, 1810, 2121, 2437
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	3 cut(s)	2076, 2125, 2195
BslI	CCNNNNNNNGG	6 cut(s)	709, 1106, 1367, 1777, 1991, 2039
BsmAI	GTCTC	5 cut(s)	154, 1248, 1737, 2003, 2382
BsmBI	CGTCTC	2 cut(s)	154, 1737
BsmFI	GGGAC	3 cut(s)	2076, 2125, 2195
BsmI	GAATGC	2 cut(s)	670, 2197
BsnI	GGCC	7 cut(s)	26, 239, 260, 1099, 1140, 1642, 2360
BsoBI	CYCGRG	1 cut(s)	917
Bsp119I	TTCGAA	2 cut(s)	414, 662
Bsp1286I	GDGCHC	6 cut(s)	204, 973, 1810, 2121, 2414, 2437
Bsp13I	TCCGGA	1 cut(s)	565
Bsp1407I	TGTACA	2 cut(s)	2398, 2504
Bsp19I	CCATGG	2 cut(s)	1202, 1494
BspANI	GGCC	7 cut(s)	26, 239, 260, 1099, 1140, 1642, 2360
BspCNI	CTCAG	7 cut(s)	661, 670, 811, 1106, 1726, 2079, 2392
BspEI	TCCGGA	1 cut(s)	565
BspFNI	CGCG	4 cut(s)	17, 89, 1445, 1614
BspHI	TCATGA	1 cut(s)	1762
BspLI	GGNNCC	6 cut(s)	564, 618, 1075, 1354, 1535, 2240
BspMAI	CTGCAG	2 cut(s)	1957, 2251
BspMI	ACCTGC	1 cut(s)	1394
BspPI	GGATC	5 cut(s)	1295, 1352, 1479, 1762, 2319
BspT104I	TTCGAA	2 cut(s)	414, 662
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	287
BsrGI	TGTACA	2 cut(s)	2398, 2504
BsrI	ACTGG	5 cut(s)	957, 1043, 1111, 1477, 1710
BssECI	CCNNGG	4 cut(s)	87, 1202, 1494, 1749
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	2460
BssT1I	CCWWGG	2 cut(s)	1202, 1494
Bst2BI	CACGAG	1 cut(s)	2460
Bst2UI	CCWGG	3 cut(s)	1142, 1750, 2100
Bst4CI	ACNGT	7 cut(s)	497, 1242, 1982, 2086, 2116, 2308, 2509
Bst6I	CTCTTC	2 cut(s)	416, 1740
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstAUI	TGTACA	2 cut(s)	2398, 2504
BstBI	TTCGAA	2 cut(s)	414, 662
BstC8I	GCNNGC	3 cut(s)	1179, 1190, 2433
BstDSI	CCRYGG	3 cut(s)	87, 1202, 1494
BstENI	CCTNNNNNAGG	1 cut(s)	1365
BstFNI	CGCG	4 cut(s)	17, 89, 1445, 1614
BstHHI	GCGC	5 cut(s)	19, 209, 516, 1616, 1800
BstMAI	GTCTC	5 cut(s)	154, 1248, 1737, 2003, 2382
BstNI	CCWGG	3 cut(s)	1142, 1750, 2100
BstSCI	CCNGG	3 cut(s)	1140, 1748, 2098
BstSFI	CTRYAG	4 cut(s)	339, 1829, 1953, 2247
BstSLI	GKGCMC	2 cut(s)	973, 2414
BstUI	CGCG	4 cut(s)	17, 89, 1445, 1614
BstV1I	GCAGC	8 cut(s)	116, 775, 1502, 1663, 1739, 1939, 2236, 2378
BstV2I	GAAGAC	2 cut(s)	399, 1448
BstX2I	RGATCY	4 cut(s)	1287, 1767, 1786, 2311
BstYI	RGATCY	4 cut(s)	1287, 1767, 1786, 2311
BsuRI	GGCC	7 cut(s)	26, 239, 260, 1099, 1140, 1642, 2360
BtgI	CCRYGG	3 cut(s)	87, 1202, 1494
BtgZI	GCGATG	2 cut(s)	85, 2347
BtrI	CACGTC	1 cut(s)	1795
BtsIMutI	CAGTG	4 cut(s)	806, 1050, 2121, 2313
BveI	ACCTGC	1 cut(s)	1394
Cac8I	GCNNGC	3 cut(s)	1179, 1190, 2433
CaiI	CAGNNNCTG	3 cut(s)	253, 272, 1952
CciI	TCATGA	1 cut(s)	1762
CfoI	GCGC	5 cut(s)	19, 209, 516, 1616, 1800
Cfr13I	GGNCC	4 cut(s)	25, 1097, 1138, 1534
Cfr42I	CCGCGG	1 cut(s)	90
CseI	GACGC	1 cut(s)	1719
Csp6I	GTAC	9 cut(s)	280, 299, 550, 607, 2123, 2244, 2288, 2399, 2505
CviQI	GTAC	9 cut(s)	280, 299, 550, 607, 2123, 2244, 2288, 2399, 2505
DraI	TTTAAA	1 cut(s)	2448
EaeI	YGGCCR	1 cut(s)	2358
Eam1104I	CTCTTC	2 cut(s)	416, 1740
EarI	CTCTTC	2 cut(s)	416, 1740
EciI	GGCGGA	4 cut(s)	85, 108, 2251, 2345
Ecl136II	GAGCTC	2 cut(s)	202, 1808
Eco130I	CCWWGG	2 cut(s)	1202, 1494
Eco147I	AGGCCT	2 cut(s)	239, 260
Eco24I	GRGCYC	2 cut(s)	204, 1810
Eco32I	GATATC	3 cut(s)	879, 889, 1057
Eco47I	GGWCC	1 cut(s)	1534
Eco53kI	GAGCTC	2 cut(s)	202, 1808
Eco57I	CTGAAG	3 cut(s)	275, 1347, 1865
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	2 cut(s)	202, 1808
EcoNI	CCTNNNNNAGG	1 cut(s)	1365
EcoO109I	RGGNCCY	2 cut(s)	1097, 1534
EcoRII	CCWGG	3 cut(s)	1140, 1748, 2098
EcoRV	GATATC	3 cut(s)	879, 889, 1057
EcoT14I	CCWWGG	2 cut(s)	1202, 1494
EcoT22I	ATGCAT	1 cut(s)	1567
EcoT38I	GRGCYC	2 cut(s)	204, 1810
ErhI	CCWWGG	2 cut(s)	1202, 1494
Esp3I	CGTCTC	2 cut(s)	154, 1737
FalI	AAGNNNNNCTT	8 cut(s)	642, 674, 756, 788, 1308, 1340, 1863, 1895
FaqI	GGGAC	3 cut(s)	2076, 2125, 2195
FauI	CCCGC	2 cut(s)	1103, 2220
FbaI	TGATCA	1 cut(s)	1918
FriOI	GRGCYC	2 cut(s)	204, 1810
FspI	TGCGCA	1 cut(s)	1799
GlaI	GCGC	5 cut(s)	18, 208, 515, 1615, 1799
GsuI	CTGGAG	4 cut(s)	350, 618, 1491, 2121
HaeIII	GGCC	7 cut(s)	26, 239, 260, 1099, 1140, 1642, 2360
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	1719
HhaI	GCGC	5 cut(s)	19, 209, 516, 1616, 1800
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	5 cut(s)	17, 207, 514, 1614, 1798
HinP1I	GCGC	5 cut(s)	17, 207, 514, 1614, 1798
HincII	GTYRAC	1 cut(s)	1417
HindII	GTYRAC	1 cut(s)	1417
HindIII	AAGCTT	3 cut(s)	65, 1196, 2337
HinfI	GANTC	8 cut(s)	269, 373, 920, 1319, 1556, 1899, 2064, 2375
HpaI	GTTAAC	1 cut(s)	1417
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	4 cut(s)	181, 517, 1466, 1565
Hpy166II	GTNNAC	4 cut(s)	163, 971, 1274, 1417
Hpy8I	GTNNAC	4 cut(s)	163, 971, 1274, 1417
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	9 cut(s)	16, 46, 250, 448, 667, 887, 1361, 1371, 2053
HpyCH4III	ACNGT	7 cut(s)	497, 1242, 1982, 2086, 2116, 2308, 2509
HpyCH4IV	ACGT	4 cut(s)	147, 605, 1794, 2215
HpySE526I	ACGT	4 cut(s)	147, 605, 1794, 2215
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	5 cut(s)	17, 207, 514, 1614, 1798
Kpn2I	TCCGGA	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	1918
KspAI	GTTAAC	1 cut(s)	1417
KspI	CCGCGG	1 cut(s)	90
LmnI	GCTCC	6 cut(s)	140, 599, 616, 863, 918, 2238
Lsp1109I	GCAGC	8 cut(s)	116, 775, 1502, 1663, 1739, 1939, 2236, 2378
LweI	GCATC	7 cut(s)	433, 574, 934, 962, 1154, 1398, 1970
MaeII	ACGT	4 cut(s)	147, 605, 1794, 2215
MaeIII	GTNAC	4 cut(s)	505, 1429, 1553, 2197
MbiI	CCGCTC	1 cut(s)	135
MboII	GAAGA	9 cut(s)	404, 433, 1448, 1727, 1796, 1853, 1861, 2164, 2306
MfeI	CAATTG	2 cut(s)	1584, 1865
MflI	RGATCY	4 cut(s)	1287, 1767, 1786, 2311
MhlI	GDGCHC	6 cut(s)	204, 973, 1810, 2121, 2414, 2437
MlsI	TGGCCA	1 cut(s)	2360
MluNI	TGGCCA	1 cut(s)	2360
MlyI	GAGTC	5 cut(s)	929, 1550, 1893, 2058, 2384
MmeI	TCCRAC	1 cut(s)	561
Mox20I	TGGCCA	1 cut(s)	2360
Mph1103I	ATGCAT	1 cut(s)	1567
MroI	TCCGGA	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	2360
MseI	TTAA	9 cut(s)	477, 1416, 1451, 1593, 1637, 1685, 1938, 2139, 2447
MslI	CAYNNNNRTG	1 cut(s)	650
Msp20I	TGGCCA	1 cut(s)	2360
MspA1I	CMGCKG	3 cut(s)	89, 2227, 2285
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	3 cut(s)	1142, 1750, 2100
MunI	CAATTG	2 cut(s)	1584, 1865
Mva1269I	GAATGC	2 cut(s)	670, 2197
MvaI	CCWGG	3 cut(s)	1142, 1750, 2100
MvnI	CGCG	4 cut(s)	17, 89, 1445, 1614
NcoI	CCATGG	2 cut(s)	1202, 1494
NlaIV	GGNNCC	6 cut(s)	564, 618, 1075, 1354, 1535, 2240
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	4 cut(s)	505, 1429, 1553, 2197
NsbI	TGCGCA	1 cut(s)	1799
NsiI	ATGCAT	1 cut(s)	1567
NspV	TTCGAA	2 cut(s)	414, 662
PaeR7I	CTCGAG	1 cut(s)	917
PagI	TCATGA	1 cut(s)	1762
PceI	AGGCCT	2 cut(s)	239, 260
PctI	GAATGC	2 cut(s)	670, 2197
PfeI	GAWTC	3 cut(s)	269, 373, 1319
PleI	GAGTC	5 cut(s)	928, 1550, 1893, 2058, 2383
PpsI	GAGTC	5 cut(s)	928, 1550, 1893, 2058, 2383
PpuMI	RGGWCCY	1 cut(s)	1534
PshBI	ATTAAT	1 cut(s)	1685
Psp124BI	GAGCTC	2 cut(s)	204, 1810
Psp5II	RGGWCCY	1 cut(s)	1534
Psp6I	CCWGG	3 cut(s)	1140, 1748, 2098
PspGI	CCWGG	3 cut(s)	1140, 1748, 2098
PspN4I	GGNNCC	6 cut(s)	564, 618, 1075, 1354, 1535, 2240
PspPI	GGNCC	4 cut(s)	25, 1097, 1138, 1534
PspPPI	RGGWCCY	1 cut(s)	1534
PspXI	VCTCGAGB	1 cut(s)	917
PstI	CTGCAG	2 cut(s)	1957, 2251
PstNI	CAGNNNCTG	3 cut(s)	253, 272, 1952
PsuI	RGATCY	4 cut(s)	1287, 1767, 1786, 2311
RsaI	GTAC	9 cut(s)	281, 300, 551, 608, 2124, 2245, 2289, 2400, 2506
RsaNI	GTAC	9 cut(s)	280, 299, 550, 607, 2123, 2244, 2288, 2399, 2505
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	2 cut(s)	204, 1810
SacII	CCGCGG	1 cut(s)	90
SaqAI	TTAA	9 cut(s)	477, 1416, 1451, 1593, 1637, 1685, 1938, 2139, 2447
Sau96I	GGNCC	4 cut(s)	25, 1097, 1138, 1534
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	5 cut(s)	929, 1550, 1893, 2058, 2384
ScrFI	CCNGG	3 cut(s)	1142, 1750, 2100
SduI	GDGCHC	6 cut(s)	204, 973, 1810, 2121, 2414, 2437
SfaNI	GCATC	7 cut(s)	433, 574, 934, 962, 1154, 1398, 1970
SfcI	CTRYAG	4 cut(s)	339, 1829, 1953, 2247
Sfr274I	CTCGAG	1 cut(s)	917
Sfr303I	CCGCGG	1 cut(s)	90
SfuI	TTCGAA	2 cut(s)	414, 662
SgrBI	CCGCGG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	1534
SlaI	CTCGAG	1 cut(s)	917
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	4 cut(s)	302, 917, 1247, 2438
SmoI	CTYRAG	4 cut(s)	302, 917, 1247, 2438
SpeI	ACTAGT	1 cut(s)	2201
SseBI	AGGCCT	2 cut(s)	239, 260
SspI	AATATT	1 cut(s)	1297
SstI	GAGCTC	2 cut(s)	204, 1810
StuI	AGGCCT	2 cut(s)	239, 260
StyD4I	CCNGG	3 cut(s)	1140, 1748, 2098
StyI	CCWWGG	2 cut(s)	1202, 1494
TaaI	ACNGT	7 cut(s)	497, 1242, 1982, 2086, 2116, 2308, 2509
TaiI	ACGT	4 cut(s)	150, 608, 1797, 2218
TaqI	TCGA	9 cut(s)	141, 378, 414, 662, 891, 918, 1012, 1157, 2035
TaqII	GACCGA	1 cut(s)	1668
TatI	WGTACW	3 cut(s)	298, 2398, 2504
TauI	GCSGC	5 cut(s)	17, 86, 89, 170, 233
TfiI	GAWTC	3 cut(s)	269, 373, 1319
Tru1I	TTAA	9 cut(s)	477, 1416, 1451, 1593, 1637, 1685, 1938, 2139, 2447
Tru9I	TTAA	9 cut(s)	477, 1416, 1451, 1593, 1637, 1685, 1938, 2139, 2447
TscAI	CASTG	4 cut(s)	806, 1050, 2121, 2313
TseFI	GTSAC	4 cut(s)	505, 1429, 1553, 2197
TseI	GCWGC	8 cut(s)	104, 788, 1490, 1651, 1727, 1952, 2224, 2366
Tsp45I	GTSAC	4 cut(s)	505, 1429, 1553, 2197
TspDTI	ATGAA	8 cut(s)	601, 821, 1142, 1353, 1727, 2013, 2490, 2507
TspGWI	ACGGA	2 cut(s)	1002, 1300
TspRI	CASTG	4 cut(s)	806, 1050, 2121, 2313
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	1534
VspI	ATTAAT	1 cut(s)	1685
XagI	CCTNNNNNAGG	1 cut(s)	1365
XapI	RAATTY	3 cut(s)	30, 933, 1927
XbaI	TCTAGA	2 cut(s)	70, 962
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1132, 1200
XhoI	CTCGAG	1 cut(s)	917
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	1567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.