RchiOBHm_Chr5g0040161

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011616
Physical Location & Seq
Reverse (-)
34877001 .. 34877700
700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31868

Sequence Viewer

Length: 456 bp
ATGGAACTTGTTCTTAGCAAATGGGTTTGCACATTTCTATTATGCTCTTGGCTCATCTTCTCTCCAGTATACTCAGTGGTGGGATTACATGGTGACTCTAAAGTGAGAGCAGAATATTTGGGAGGGTGGTTGGTAGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAATGGAGATATGCTTGATGGAACAGTGGTACAACTAAAGTCGGTAACTTTGGATAAGTATGTCTTTGCAGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGTTGCATCTTCATGGGAAACGCTGAGGGTAAGATGCTCAATCATCAATGGTTCCAATTTTGTATTGGTTGTTAGCCGATTATTTGAAATTGAAGGATCTGCAAACTCAAAAGTAGTCATCTTTTTTTTTATCAATTCCCCTTTTCAGAAATATGAACAGATATTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulase Fascin

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

5.8

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 60 - 119 4.9e-17 Domain of unknown function (DUF7910)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 69
AclWI GGATC 2 cut(s) 155, 388
AfaI GTAC 1 cut(s) 207
AgsI TTSAA 2 cut(s) 371, 377
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 155, 388
AoxI GGCC 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 308
BccI CCATC 2 cut(s) 161, 188
BcoDI GTCTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 262, 337
BmsI GCATC 2 cut(s) 299, 308
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 87, 299
BseNI ACTGG 1 cut(s) 65
BshFI GGCC 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 147, 380
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 86, 300
BspLI GGNNCC 2 cut(s) 262, 337
BspPI GGATC 2 cut(s) 155, 388
BsrI ACTGG 1 cut(s) 65
BssMI GATC 2 cut(s) 147, 380
BssNAI GTATAC 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 14, 73, 308
BstKTI GATC 2 cut(s) 150, 383
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 147, 380
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 81, 207
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 206
CviAII CATG 2 cut(s) 89, 297
CviJI RGCY 4 cut(s) 52, 154, 263, 360
CviKI_1 RGCY 4 cut(s) 52, 154, 263, 360
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 3 cut(s) 14, 73, 308
DpnI GATC 2 cut(s) 149, 382
DpnII GATC 2 cut(s) 147, 380
FaeI CATG 2 cut(s) 92, 300
FaiI YATR 7 cut(s) 43, 70, 90, 188, 237, 298, 438
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 2 cut(s) 88, 296
FblI GTMKAC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 263
Hin1II CATG 2 cut(s) 92, 300
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 432
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 134, 165, 371
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 30, 245, 290, 386
HpyF3I CTNAG 3 cut(s) 14, 73, 308
Hsp92II CATG 2 cut(s) 92, 300
Kzo9I GATC 2 cut(s) 147, 380
LpnPI CCDG 2 cut(s) 78, 436
LweI GCATC 2 cut(s) 299, 308
MaeIII GTNAC 2 cut(s) 92, 220
MalI GATC 2 cut(s) 149, 382
MboI GATC 2 cut(s) 147, 380
MboII GAAGA 2 cut(s) 49, 285
MflI RGATCY 1 cut(s) 380
MluCI AATT 3 cut(s) 340, 372, 418
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 3 cut(s) 116, 251, 303
MroXI GAANNNNTTC 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 171
NdeII GATC 2 cut(s) 147, 380
NlaIII CATG 2 cut(s) 92, 300
NlaIV GGNNCC 2 cut(s) 262, 337
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 9
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 262, 337
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 295
Sau3AI GATC 2 cut(s) 147, 380
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 89
SetI ASST 2 cut(s) 145, 455
SfaNI GCATC 2 cut(s) 299, 308
SgeI CNNG 7 cut(s) 20, 60, 77, 101, 163, 203, 309
SmiMI CAYNNNNRTG 1 cut(s) 295
Sse9I AATT 3 cut(s) 340, 372, 418
SspI AATATT 1 cut(s) 116
TaaI ACNGT 1 cut(s) 202
TasI AATT 3 cut(s) 340, 372, 418
TscAI CASTG 2 cut(s) 81, 207
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 285, 453
TspRI CASTG 2 cut(s) 81, 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.