ATPase family associated with various cellular activities (AAA)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0396721 RchiOBHm_Chr5g0040161 RchiOBHm_Chr6g0266481 |
| rosa_laevigata | RLG00000013317 RLG00000023273 |
| rosa_multiflora | Rmu_sc0002723.1_g000038 Rmu_sc0005394.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00223570 |
| rosa_rugosa | Rorug01G0150100.1 Rorug04G0116200 |
| rosa_samantha | Rh2CG294500 Rh3DG310500 Rh4AG240800 Rh4BG174500 Rh4BG174600 Rh4BG244000 Rh5DG228500 Rh6AG223000 Rh7AG214700 Rh7AG214800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 207 |
| AciI | CCGC | 1 cut(s) | 91 |
| AjnI | CCWGG | 1 cut(s) | 94 |
| AluBI | AGCT | 4 cut(s) | 7, 167, 193, 234 |
| AluI | AGCT | 4 cut(s) | 7, 167, 193, 234 |
| Alw21I | GWGCWC | 1 cut(s) | 195 |
| AoxI | GGCC | 2 cut(s) | 92, 128 |
| ApeKI | GCWGC | 1 cut(s) | 88 |
| AseI | ATTAAT | 1 cut(s) | 71 |
| BanII | GRGCYC | 1 cut(s) | 195 |
| Bbv12I | GWGCWC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 75 |
| BccI | CCATC | 2 cut(s) | 31, 221 |
| BciT130I | CCWGG | 1 cut(s) | 96 |
| BisI | GCNGC | 2 cut(s) | 89, 92 |
| BlsI | GCNGC | 2 cut(s) | 90, 93 |
| Bme1390I | CCNGG | 1 cut(s) | 96 |
| BmiI | GGNNCC | 1 cut(s) | 241 |
| BmrFI | CCNGG | 1 cut(s) | 96 |
| BpmI | CTGGAG | 1 cut(s) | 232 |
| Bpu10I | CCTNAGC | 1 cut(s) | 235 |
| BpuEI | CTTGAG | 1 cut(s) | 120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 205, 235 |
| Bse1I | ACTGG | 1 cut(s) | 215 |
| BseBI | CCWGG | 1 cut(s) | 96 |
| BseGI | GGATG | 1 cut(s) | 232 |
| BseNI | ACTGG | 1 cut(s) | 215 |
| BseXI | GCAGC | 1 cut(s) | 75 |
| BshFI | GGCC | 2 cut(s) | 94, 130 |
| BsiHKAI | GWGCWC | 1 cut(s) | 195 |
| BsnI | GGCC | 2 cut(s) | 94, 130 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| Bsp143I | GATC | 1 cut(s) | 46 |
| BspACI | CCGC | 1 cut(s) | 91 |
| BspANI | GGCC | 2 cut(s) | 94, 130 |
| BspLI | GGNNCC | 1 cut(s) | 241 |
| BsrI | ACTGG | 1 cut(s) | 215 |
| BssMI | GATC | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 96 |
| Bst4CI | ACNGT | 1 cut(s) | 122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 49 |
| BstDEI | CTNAG | 1 cut(s) | 235 |
| BstF5I | GGATG | 1 cut(s) | 232 |
| BstKTI | GATC | 1 cut(s) | 49 |
| BstMBI | GATC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 49 |
| BstNI | CCWGG | 1 cut(s) | 96 |
| BstSCI | CCNGG | 1 cut(s) | 94 |
| BstV1I | GCAGC | 1 cut(s) | 75 |
| BsuRI | GGCC | 2 cut(s) | 94, 130 |
| BtsCI | GGATG | 1 cut(s) | 232 |
| CviAII | CATG | 2 cut(s) | 44, 103 |
| CviJI | RGCY | 6 cut(s) | 7, 94, 130, 167, 193, 234 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 94, 130, 167, 193, 234 |
| DdeI | CTNAG | 1 cut(s) | 235 |
| DpnI | GATC | 1 cut(s) | 48 |
| DpnII | GATC | 1 cut(s) | 46 |
| Ecl136II | GAGCTC | 1 cut(s) | 193 |
| Eco24I | GRGCYC | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 1 cut(s) | 193 |
| EcoICRI | GAGCTC | 1 cut(s) | 193 |
| EcoRII | CCWGG | 1 cut(s) | 94 |
| EcoT38I | GRGCYC | 1 cut(s) | 195 |
| FaeI | CATG | 2 cut(s) | 47, 106 |
| FaiI | YATR | 4 cut(s) | 28, 45, 104, 164 |
| FatI | CATG | 2 cut(s) | 43, 102 |
| FblI | GTMKAC | 1 cut(s) | 207 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 92 |
| FokI | GGATG | 1 cut(s) | 239 |
| FriOI | GRGCYC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 92 |
| GluI | GCNGC | 2 cut(s) | 89, 92 |
| GsuI | CTGGAG | 1 cut(s) | 232 |
| HaeIII | GGCC | 2 cut(s) | 94, 130 |
| Hin1II | CATG | 2 cut(s) | 47, 106 |
| HindIII | AAGCTT | 2 cut(s) | 5, 232 |
| Hpy166II | GTNNAC | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 1 cut(s) | 66 |
| Hpy8I | GTNNAC | 1 cut(s) | 208 |
| HpyCH4III | ACNGT | 1 cut(s) | 122 |
| HpyCH4V | TGCA | 1 cut(s) | 255 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 49 |
| HpyF3I | CTNAG | 1 cut(s) | 235 |
| Hsp92II | CATG | 2 cut(s) | 47, 106 |
| Kzo9I | GATC | 1 cut(s) | 46 |
| LpnPI | CCDG | 3 cut(s) | 81, 108, 196 |
| Lsp1109I | GCAGC | 1 cut(s) | 75 |
| MalI | GATC | 1 cut(s) | 48 |
| MboI | GATC | 1 cut(s) | 46 |
| MboII | GAAGA | 1 cut(s) | 163 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MluCI | AATT | 2 cut(s) | 72, 265 |
| MseI | TTAA | 2 cut(s) | 71, 268 |
| MspR9I | CCNGG | 1 cut(s) | 96 |
| MvaI | CCWGG | 1 cut(s) | 96 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 49 |
| NdeII | GATC | 1 cut(s) | 46 |
| NlaIII | CATG | 2 cut(s) | 47, 106 |
| NlaIV | GGNNCC | 1 cut(s) | 241 |
| PkrI | GCNGC | 2 cut(s) | 90, 93 |
| PshBI | ATTAAT | 1 cut(s) | 71 |
| Psp124BI | GAGCTC | 1 cut(s) | 195 |
| Psp6I | CCWGG | 1 cut(s) | 94 |
| PspGI | CCWGG | 1 cut(s) | 94 |
| PspN4I | GGNNCC | 1 cut(s) | 241 |
| SacI | GAGCTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 2 cut(s) | 71, 268 |
| SatI | GCNGC | 2 cut(s) | 89, 92 |
| Sau3AI | GATC | 1 cut(s) | 46 |
| ScrFI | CCNGG | 1 cut(s) | 96 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SetI | ASST | 5 cut(s) | 9, 169, 195, 236, 241 |
| SgeI | CNNG | 9 cut(s) | 46, 56, 65, 78, 107, 108, 115, 149, 223 |
| SmlI | CTYRAG | 1 cut(s) | 135 |
| SmoI | CTYRAG | 1 cut(s) | 135 |
| Sse9I | AATT | 2 cut(s) | 72, 265 |
| SsiI | CCGC | 1 cut(s) | 91 |
| SstI | GAGCTC | 1 cut(s) | 195 |
| StyD4I | CCNGG | 1 cut(s) | 94 |
| TaaI | ACNGT | 1 cut(s) | 122 |
| TaqI | TCGA | 1 cut(s) | 67 |
| TasI | AATT | 2 cut(s) | 72, 265 |
| TauI | GCSGC | 1 cut(s) | 94 |
| Tru1I | TTAA | 2 cut(s) | 71, 268 |
| Tru9I | TTAA | 2 cut(s) | 71, 268 |
| TseI | GCWGC | 1 cut(s) | 88 |
| TspDTI | ATGAA | 2 cut(s) | 17, 119 |
| VspI | ATTAAT | 1 cut(s) | 71 |
| XmiI | GTMKAC | 1 cut(s) | 207 |